bioregistry 0.13.17__py3-none-any.whl → 0.13.18__py3-none-any.whl

bioregistry/external/aberowl/processed.json

@@ -142,7 +142,7 @@
   },
   "AEO": {
     "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology",
-    "download_owl": "http://aber-owl.net/media/ontologies/AEO/8/aeo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/AEO/9/aeo.owl",
     "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
     "name": "Anatomical Entity Ontology",
     "prefix": "AEO"
@@ -1386,7 +1386,7 @@
   },
   "CHEBI": {
     "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
-    "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/209/chebi.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/210/chebi.owl",
     "homepage": "http://www.ebi.ac.uk/chebi",
     "name": "Chemical Entities of Biological Interest",
     "prefix": "CHEBI"
@@ -2540,7 +2540,7 @@
   },
   "ECO": {
     "description": "An ontology for experimental and other evidence statements.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ECO/115/eco.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ECO/116/eco.owl",
     "homepage": "https://www.evidenceontology.org",
     "name": "Evidence and Conclusion Ontology",
     "prefix": "ECO"
@@ -2680,8 +2680,8 @@
   },
   "EHDAA2": {
     "description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.",
-    "download_owl": "http://aber-owl.net/media/ontologies/EHDAA2/33/ehdaa2.owl",
-    "homepage": "http://genex.hgu.mrc.ac.uk/",
+    "download_owl": "http://aber-owl.net/media/ontologies/EHDAA2/34/ehdaa2.owl",
+    "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology",
     "name": "Human developmental anatomy, abstract",
     "prefix": "EHDAA2"
   },
@@ -4262,7 +4262,7 @@
   },
   "HP": {
     "description": "The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.",
-    "download_owl": "http://aber-owl.net/media/ontologies/HP/622/hp.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/HP/623/hp.owl",
     "homepage": "http://www.human-phenotype-ontology.org/",
     "name": "Human Phenotype Ontology (HPO)",
     "prefix": "HP"
@@ -5512,7 +5512,7 @@
   },
   "MA": {
     "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus).",
-    "download_owl": "http://aber-owl.net/media/ontologies/MA/127/ma.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MA/128/ma.owl",
     "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
     "name": "Mouse adult gross anatomy",
     "prefix": "MA"
@@ -6061,7 +6061,7 @@
   },
   "MMO": {
     "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MMO/119/mmo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MMO/120/mmo.owl",
     "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
     "name": "Measurement method ontology",
     "prefix": "MMO"
@@ -6131,7 +6131,7 @@
   },
   "MONDO": {
     "description": "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MONDO/108/mondo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MONDO/109/mondo.owl",
     "homepage": "https://monarch-initiative.github.io/mondo",
     "name": "Mondo Disease Ontology",
     "prefix": "MONDO"
@@ -6219,7 +6219,7 @@
   },
   "MS": {
     "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MS/228/ms.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MS/229/ms.owl",
     "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
     "name": "Mass spectrometry ontology",
     "prefix": "MS"
@@ -6931,7 +6931,7 @@
   },
   "OBI": {
     "description": "An integrated ontology for the description of life-science and clinical investigations",
-    "download_owl": "http://aber-owl.net/media/ontologies/OBI/62/obi.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/OBI/63/obi.owl",
     "homepage": "http://obi-ontology.org",
     "name": "Ontology for Biomedical Investigations",
     "prefix": "OBI"
@@ -7252,7 +7252,7 @@
   },
   "OHMI": {
     "description": "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions.",
-    "download_owl": "http://aber-owl.net/media/ontologies/OHMI/16/ohmi.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/OHMI/17/ohmi.owl",
     "homepage": "https://github.com/ohmi-ontology/ohmi",
     "name": "Ontology of Host-Microbiome Interactions",
     "prefix": "OHMI"
@@ -7351,7 +7351,7 @@
   },
   "OMRSE": {
     "description": "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations.",
-    "download_owl": "http://aber-owl.net/media/ontologies/OMRSE/63/omrse.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/OMRSE/64/omrse.owl",
     "homepage": "https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview",
     "name": "Ontology for Modeling and Representation of Social Entities",
     "prefix": "OMRSE"
@@ -7839,6 +7839,10 @@
     "prefix": "ORTH",
     "version": "2015-11-27"
   },
+  "OSDI": {
+    "name": "Ontology for the Simulation of Diseases",
+    "prefix": "OSDI"
+  },
   "OSM": {
     "description": "Esta ontologia foi desenvolvida para auxiliar na gestão da Rede de Atenção Psicossocial no contexto brasileiro, a fim de possibilitar a criação de ferramentas computacionais inteligentes, permitindo a integração e interoperabilidade entre bases de dados independentes e possibilitando a geração de indicadores para a saúde mental, visando melhorar a tomada de decisão, o planejamento e a eficiência e eficácia dos serviços prestados à comunidade.",
     "download_owl": "http://aber-owl.net/media/ontologies/OSM/1/osm.owl",
@@ -8536,7 +8540,7 @@
   },
   "PSO": {
     "description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.",
-    "download_owl": "http://aber-owl.net/media/ontologies/PSO/6/pso.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/PSO/7/pso.owl",
     "homepage": "https://github.com/Planteome/plant-stress-ontology",
     "name": "Plant Stress Ontology",
     "prefix": "PSO"
@@ -8976,7 +8980,7 @@
   },
   "RS": {
     "description": "Ontology of rat strains",
-    "download_owl": "http://aber-owl.net/media/ontologies/RS/203/rs.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/RS/204/rs.owl",
     "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
     "name": "Rat Strain Ontology",
     "prefix": "RS"
@@ -10260,7 +10264,7 @@
   },
   "UO": {
     "description": "Metrical units for use in conjunction with PATO",
-    "download_owl": "http://aber-owl.net/media/ontologies/UO/61/uo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/UO/62/uo.owl",
     "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
     "name": "Units of measurement ontology",
     "prefix": "UO"
@@ -10554,7 +10558,7 @@
   },
   "VT": {
     "description": "An ontology of traits covering vertebrates",
-    "download_owl": "http://aber-owl.net/media/ontologies/VT/141/vt.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/VT/142/vt.owl",
     "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
     "name": "Vertebrate trait ontology",
     "prefix": "VT"
@@ -10722,7 +10726,7 @@
   },
   "XCO": {
     "description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.",
-    "download_owl": "http://aber-owl.net/media/ontologies/XCO/154/xco.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/XCO/155/xco.owl",
     "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000",
     "name": "Experimental condition ontology",
     "prefix": "XCO"

bioregistry/external/bartoc/processed.json

@@ -2508,9 +2508,10 @@
   "1376": {
     "description": "The iDAI.Gazetteer is a webservice that connects place names with coordinates and works in two directions. Inside, it serves as a standard datavocabular for all DAI's location-specific information and information systems. To the outside he should connect these with the global Gazetteer systems.",
     "homepage": "http://gazetteer.dainst.org/app/",
-    "license": "CC-BY-3.0",
-    "name": "iDAI.gazetteer Thesaurus",
-    "prefix": "1376"
+    "license": "CC-BY-4.0",
+    "name": "iDAI.gazetteer",
+    "prefix": "1376",
+    "wikidata_database": "Q93290690 "
   },
   "1377": {
     "description": "The document classification code is a working tool used to classify any document produced or received by an organ in the exercise of its functions and activities. Subject classification is used for the purpose of grouping the documents under The same theme, as a way to expedite its recovery and to facilitate the archival tasks related to the evaluation, selection, elimination, transfer, recollection and access to these documents, since the archival work is carried out based on the content of the document, which The classification defines, therefore, the physical organization of the archived documents, constituting a basic reference for its recovery. In the classification code, the functions, activities, species and Document types generally referred to as subjects, are hierarchically According to the functions and activities performed by the body. In other words, the sums are given numeric codes, which reflect the functional hierarchy of the organ, defined through classes, subclasses, groups and subgroups, always starting from the general to the particular. For this instrument the model of decimal classification code was adopted. As the name implies, the decimal system of classification by subjects constitutes a numerical code divided in ten classes and these in turn in ten subclasses and so on.",
@@ -15277,7 +15278,8 @@
   },
   "20300": {
     "description": "Olympic games glossary (English, Greek, French)",
-    "homepage": "http://repository.academyofathens.gr/document/201864.pdf",
+    "homepage": "https://repository.academyofathens.gr/keeon/content/40",
+    "name": "Olympic games glossary",
     "prefix": "20300"
   },
   "20301": {
@@ -15439,6 +15441,7 @@
   "20323": {
     "description": "This list relates to the MIDAS unit Management Proposal Type. The different contexts of consultations can be recorded, which in turn may determine the appropriate nature, method, procedure to be adopted by the inventory in response to the consultation (e.g. planning application, listed building consent, conservation area appraisal).",
     "homepage": "http://www.heritage-standards.org.uk/fish-vocabularies/",
+    "name": "Consultation Type",
     "prefix": "20323"
   },
   "20324": {
@@ -15450,6 +15453,7 @@
   "20325": {
     "description": "This list relates to the MIDAS unit Management Proposal Outcome. It is intended to provide the option to audit the effectiveness of archaeological recommendations made in response to proposed work or planning applications by recording the final result of the planning application (e.g. approved with full condition, refused, amended).",
     "homepage": "http://www.heritage-standards.org.uk/fish-vocabularies/",
+    "name": "Final Outcome List",
     "prefix": "20325"
   },
   "20326": {
@@ -15590,7 +15594,6 @@
     "prefix": "20346"
   },
   "20347": {
-    "homepage": "http://uri.gbv.de/terminology/bilddatenbank_typ_art/",
     "name": "Type (bilddatenbank.gbv.de)",
     "prefix": "20347"
   },
@@ -16322,16 +16325,18 @@
     "prefix": "20454"
   },
   "20455": {
+    "description": "Artificial Intelligence is a field of computer science concerned with the design of intelligent computational systems, that is, systems that exhibit characteristics associated with intelligence in human behavior.\n\nThe book covers Artificial Intelligence throughout its entire historical development, beginning with approaches based on the systematic recording and codification of human intelligence. It describes problem modeling, methods of knowledge representation, and algorithms for searching for their solutions. It then delves into areas such as knowledge-based systems, constraint solving, action planning, machine learning, genetic algorithms, fuzzy logic, and neural networks. Finally, it also extends to more complex applications, such as intelligent agents and the semantic web.\n\nThe primary aim of the book was to serve as a textbook for teaching a course in Artificial Intelligence. Since its first edition (2002), the book has indeed been widely accepted by almost all university-level departments of computer science, a trend that continued in the following two editions.",
     "homepage": "https://aibook.gr/glossary-en/",
     "name": "Artificial intelligence glossary",
     "prefix": "20455"
   },
   "20456": {
     "homepage": "https://aibook.gr/glossary-en/",
-    "name": "Artificial intelligence glossary",
+    "name": "Artificial intelligence glossary - Duplicate from https://bartoc.org/en/node/20455",
     "prefix": "20456"
   },
   "20457": {
+    "description": "The glossary of the Conference of Ministers responsible for Spatial/Regional Planning of the Council of Europe (CEMAT), containing the basic terms used in European spatial development policies, formed part of the Work Programme of the Committee of Senior Officials and was presented at the 14th Session of the Conference of Ministers responsible for Spatial/Regional Planning in Lisbon (Portugal), on 26–27 October 2006, under the theme “Networks for the Sustainable Spatial Development of the European Continent: Bridges across Europe.”\n\nIt is addressed to senior officials, professionals, and representatives of civil society who are involved in spatial planning policies and related activities. The glossary was prepared by the Committee of Senior Officials of the CEMAT Conference of Ministers responsible for Spatial/Regional Planning, with the assistance of Mr Jacques Robert, Expert of the Council of Europe, within the framework of the work carried out by the Spatial Planning and Landscape Division of the Directorate of Culture and Cultural and Natural Heritage.",
     "homepage": "https://rm.coe.int/16806f7d5b",
     "name": "Spatial development glossary",
     "prefix": "20457"
@@ -18368,6 +18373,7 @@
     "description": "The LIDO Gender Actor Vocabulary is a controlled list of terms recommended to use as values in the LIDO Gender Actor element, indicating the sex assigned at birth or the gender identity of an actor",
     "homepage": "http://terminology.lido-schema.org/genderActor",
     "license": "CC-BY-4.0",
+    "name": "LIDO Terminology Gender Actor",
     "prefix": "20738"
   },
   "20739": {
@@ -20127,6 +20133,21 @@
     "name": "vocnet",
     "prefix": "21006"
   },
+  "21007": {
+    "abbreviation": "Plasma-O",
+    "description": "Plasma Ontology, also called Plasma-O, is a domain-specific ontology for low-temperature plasma science and technology. It reuses several classes and properties from other ontologies such as VIVO, BIBO, and FOAF.",
+    "homepage": "https://github.com/plasma-mds/plasma-ontology",
+    "license": "CC-BY-4.0",
+    "name": "Plasma-Ontology",
+    "prefix": "21007"
+  },
+  "21008": {
+    "description": "MathModDB is a database of mathematical models developed by the Mathematical Research Data Initiative (MaRDI). MathModDB defines a data model with classes (Mathematical Model, Mathematical Formulation, Research Field, Research Problem, Quantity [Kind], Computational Task, Publication), object properties/relations, data properties and annotation properties as an ontology. This ontology is populated with individuals/data from various fields of applied mathematics, making it a knowledge graph.",
+    "homepage": "https://portal.mardi4nfdi.de/wiki/MathModDB",
+    "license": "CC-BY-4.0",
+    "name": "MathModDB Ontology and Knowledge Graph for Mathematical Models",
+    "prefix": "21008"
+  },
   "211": {
     "abbreviation": "CABT",
     "description": "The CAB Thesaurus is the essential search tool for all users of the CAB ABSTRACTS™ and Global Health databases and related products. The CAB Thesaurus is not only an invaluable aid for database users but it has many potential uses by individuals and organizations indexing their own information resources for both internal use and on the Internet.\n\nIts strengths include: Controlled vocabulary that has been in constant use since 1983; Regularly updated (current version released July 2017) (...); Broad coverage of pure and applied life sciences, technology and social sciences (...); Total number of terms approaching 2.7 million; Specific terminology for all subjects covered; Includes about 241,900 plant, animal and microorganism names; Broad, narrow and related terms to help users find relevant terminology; Cross-references from non-preferred synonyms to preferred terms; Multi-lingual, with Dutch, Portuguese and Spanish equivalents for most English terms, plus lesser content in Danish, Finnish, French, German, Italian, Norwegian and Swedish; American and British spelling variants; Relevant CAS registry numbers for chemicals; Commission notation for enzymes.",
@@ -21799,7 +21820,6 @@
     "prefix": "458"
   },
   "459": {
-    "abbreviation": "ICONCLASS",
     "description": "Iconclass is a subject-specific classification system. It is a hierarchically ordered collection of definitions of objects, people, events and abstract ideas that serve as the subject of an image. Art historians, researchers and curators use it to describe, classify and examine the subject of images represented in various media such as paintings, drawings and photographs. Numerous institutions across the world use Iconclass to describe and classify their collections in a standardized manner. In turn, users ranging from art historians to museum visitors use Iconclass to search and retrieve images from these collections. And as a research tool, Iconclass is also used to identify the significance of entire scenes or individual elements represented within an image. ICONCLASS applications used around the world have made it the most widely accepted classification system for visual documents. The three main components of Iconclass are: Classification System: 28,000 hierarchically ordered definitions divided into ten main divisions. Each definition consists of an alphanumeric classification code (notation) and the description of the iconographic subject (textual correlate). The definitions are used to index, catalogue and describe the subjects of images represented in works of art, reproductions, photographs and other sources. Alphabetical Index: 14,000 keywords used for locating the notation and its textual correlate needed to describe and/or index an image. Bibliography: 40,000 references to books and articles of iconographical interest (not yet online).",
     "homepage": "https://iconclass.org/",
     "license": "ODBL",

bioregistry/external/biolink/processed.json

@@ -146,6 +146,9 @@
   "METANETX.REACTION": {
     "uri_format": "https://www.metanetx.org/equa_info/$1"
   },
+  "METPO": {
+    "uri_format": "https://w3id.org/metpo/$1"
+  },
   "MI": {
     "uri_format": "http://purl.obolibrary.org/obo/MI_$1"
   },

bioregistry/external/bioportal/agroportal.json

@@ -226,7 +226,7 @@
       "name": "Filipi Miranda Soares"
     },
     "description": "The Agriculture Product Types Ontology (APTO) is an ontology of types, meaning it does not contain individuals and is intended as a classification system for agricultural commodities price index databases in Brazil. This ontology contains labels and comments in both Portuguese and English. There are two main modules: :Organism and :Product_type. The :Organism class contains subclasses that represent the taxonomy of species related to the production of given product types. It imports taxonomic information from the Global Biodiversity Information Facility (GBIF) Backbone Taxonomy via API. The :Product_type class has six main subclasses organized into major groups: :Inorganic_compound :Animal_product :Plant_product :Raw_product :Processed_product :By-product The :Animal_product and :Plant_product classes include subclasses indicating the type of processing the product has undergone. These subclasses are also children of :Raw_product, :Processed_product, and :By-product. Object Properties APTO defines nine object properties: :has_ingredient and :is_ingredient_of (inverse properties): Indicate that a product type is used in the manufacturing of a processed product type (e.g., :Cow_cheese :has_ingredient :Cow_milk). :derives_from and :derives_in (inverse properties, imported from the Relations Ontology (RO)): Indicate that a product type originates from another product type (e.g., :Cocoa_almond :derives_from :Cocoa). :member_of_taxon (imported from the Biological Collections Ontology (BCO)): Indicates that an organismal entity belongs to a taxon (e.g., :Pacu :member_of_taxon :Piaractus_mesopotamicus). :produced_by and :produces (inverse properties, imported from RO): Indicate that an organismal entity produces a given type of product. For example, :Assai :produced_by :Assai_palm, and :Assai_palm :member_of_taxon :Euterpe_oleracea. If only the final product is listed in commodity databases and the rest of the organism holds no commercial value, the product is linked directly to the taxon (e.g., :Pineapple :produced_by :Ananas_comosus). :residue_of: Indicates that a by-product is the residue of manufacturing another product (e.g., :Whey :residue_of :Cheese). :is_a_hybrid_of: Specific to the :Organism subclasses, indicating a hybrid of two species (e.g., :Citrus_aurantium :is_a_hybrid_of ( :Citrus_reticulata and :Citrus_maxima ))., meaning it does not contain individuals and is intended as a classification system for agricultural commodities price index databases in Brazil. This ontology contains labels and comments in both Portuguese and English. There are two main modules: :Organism and :Product_type. The :Organism class contains subclasses that represent the taxonomy of species related to the production of given product types. It imports taxonomic information from the Global Biodiversity Information Facility (GBIF) Backbone Taxonomy via API. The :Product_type class has six main subclasses organized into major groups: :Inorganic_compound :Animal_product :Plant_product :Raw_product :Processed_product :By-product The :Animal_product and :Plant_product classes include subclasses indicating the type of processing the product has undergone.",
-    "example_uri": "https://w3id.org/APTO#PT0051",
+    "example_uri": "https://w3id.org/APTO/PT0051",
     "homepage": "https://almescore.github.io/APTO/",
     "license": "CC-BY-4.0",
     "name": "Agriculture Product Types Ontology",
@@ -237,7 +237,7 @@
       "https://doi.org/10.1109/ACCESS.2025.3595447"
     ],
     "repository": "https://github.com/AlmesCore/APTO/tree/main",
-    "version": "1.2999999523162841797"
+    "version": "1.3.2"
   },
   "AQFO": {
     "contact": {
@@ -542,43 +542,24 @@
     "prefix": "CDNO",
     "repository": "https://github.com/Southern-Cross-Plant-Science/cdno"
   },
-  "CEON-ACTOR": {
+  "CEON": {
     "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "The Actor module of CEON (Circular Economy Ontology Network).",
-    "license": "CC-BY-4.0",
-    "name": "Circular Economy Ontology Network (CEON) - Actor Module",
-    "prefix": "CEON-ACTOR",
-    "version": "0.4"
-  },
-  "CEON-ACTORODP": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "A core ODP of the CEON ontology network, defining aspects of the actor concept.",
-    "license": "CC-BY-4.0",
-    "name": "Circular Economy Ontology Network (CEON) - Actor ODP",
-    "prefix": "CEON-ACTORODP",
-    "version": "0.4"
-  },
-  "CEON-CVN": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
+      "email": "huanyu.li@liu.se",
+      "name": "Huanyu Li"
     },
-    "description": "A core module of the CEON ontology network, defining aspects of the circular value network (CVN) itself.",
-    "license": "CC-BY-4.0",
-    "name": "Circular Economy Ontology Network (CEON) - Circular Value Network Module",
-    "prefix": "CEON-CVN",
-    "version": "0.3"
+    "description": "The full module of CEON (Circular Economy Ontology Network).",
+    "example_uri": "http://w3id.org/CEON/ontology/cvn/CircularStrategy",
+    "homepage": "https://liusemweb.github.io/CEON/",
+    "license": "https://github.com/LiUSemWeb/CEON/blob/master/LICENSE",
+    "name": "Circular Economy Ontology Network",
+    "prefix": "CEON",
+    "repository": "https://github.com/LiUSemWeb/CEON/",
+    "version": "0.2"
   },
   "CEON-ENERGY": {
     "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
+      "email": "huanyu.li@liu.se",
+      "name": "Huanyu Li"
     },
     "description": "A module of the CEON ontology network defining aspects of the energy concept.",
     "license": "CC-BY-4.0",
@@ -586,43 +567,10 @@
     "prefix": "CEON-ENERGY",
     "version": "0.2"
   },
-  "CEON-MATERIAL": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "The Material module of CEON (Circular Economy Ontology Network).",
-    "license": "CC-BY-4.0",
-    "name": "Circular Economy Ontology Network (CEON) - Material Module",
-    "prefix": "CEON-MATERIAL",
-    "version": "0.4"
-  },
-  "CEON-PLAN": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "The Plan module of CEON (Circular Economy Ontology Network).",
-    "license": "CC-BY-4.0",
-    "name": "Circular Economy Ontology Network (CEON) - Plan Module",
-    "prefix": "CEON-PLAN",
-    "version": "0.1"
-  },
-  "CEON-PROCESS": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "The Process module of CEON (Circular Economy Ontology Network).",
-    "license": "CC-BY-4.0",
-    "name": "Circular Economy Ontology Network (CEON) - Process Module",
-    "prefix": "CEON-PROCESS",
-    "version": "0.5"
-  },
   "CEON-PROCESSODP": {
     "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
+      "email": "huanyu.li@liu.se",
+      "name": "Huanyu Li"
     },
     "description": "A core ODP of the CEON ontology network, defining aspects of the process concept.",
     "license": "CC-BY-4.0",
@@ -630,38 +578,6 @@
     "prefix": "CEON-PROCESSODP",
     "version": "0.5"
   },
-  "CEON-PRODUCT": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "The Product module of CEON (Circular Economy Ontology Network).",
-    "name": "Circular Economy Ontology Network (CEON) - Product Module",
-    "prefix": "CEON-PRODUCT",
-    "version": "v2025-07-30"
-  },
-  "CEON-RESOURCEODP": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "A core ODP of the CEON ontology network defining aspects of the resource concept.",
-    "license": "CC-BY-4.0",
-    "name": "Circular Economy Ontology Network (CEON) - Resource ODP",
-    "prefix": "CEON-RESOURCEODP",
-    "version": "0.5"
-  },
-  "CEON-VALUE": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "A core ODP of the CEON ontology network, defining aspects of the value concept.",
-    "license": "CC-BY-4.0",
-    "name": "Circular Economy Ontology Network (CEON) - Value Module",
-    "prefix": "CEON-VALUE",
-    "version": "0.3"
-  },
   "CGO": {
     "contact": {
       "email": "jack.verhoosel@tno.nl",
@@ -1412,36 +1328,6 @@
     "prefix": "DFC",
     "version": "v4.0"
   },
-  "DFC-B": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "DFC Business Ontology",
-    "name": "DataFoodConsortium - Business Ontology",
-    "prefix": "DFC-B",
-    "version": "v3.0"
-  },
-  "DFC-P": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "A common vocabulary for digital food platforms (Product Glossary Part)",
-    "name": "A common vocabulary for digital food platforms (Product Glossary Part)",
-    "prefix": "DFC-P",
-    "version": "v4.0"
-  },
-  "DFC-T": {
-    "contact": {
-      "email": "mohamed-el-amine.boukerfa@inrae.fr",
-      "name": "LOV_migration"
-    },
-    "description": "A common vocabulary for digital food platforms (Technical Part)",
-    "name": "A common vocabulary for digital food platforms (Technical Part)",
-    "prefix": "DFC-T",
-    "version": "v4.0"
-  },
   "DSW": {
     "contact": {
       "email": "steve.baskauf@vanderbilt.edu",
@@ -1548,7 +1434,7 @@
     "name": "Experimental Factor Ontology",
     "prefix": "EFO",
     "repository": "https://github.com/EBISPOT/efo",
-    "version": "3.85.0"
+    "version": "3.86.0"
   },
   "ENVO": {
     "contact": {
@@ -1999,6 +1885,42 @@
     "prefix": "GR-TAX",
     "version": "2013"
   },
+  "ICASA-CORE": {
+    "contact": {
+      "email": "willis8@illinois.edu",
+      "name": "Craig Willis"
+    },
+    "description": "Ontology based on the ICASA version 2.0 data standard. The foundation of the standard is a master list of variables with major separations among descriptions of management practices or treatments, environmental conditions (soil and weather data), and measurements of crop responses as described in White et al (2013)., and measurements of crop responses as described in White et al (2013).",
+    "homepage": "https://github.com/craig-willis/icasa",
+    "name": "Core ICASA ontology for integrated description of agricultural field experiments and production",
+    "prefix": "ICASA-CORE",
+    "repository": "https://github.com/craig-willis/icasa",
+    "version": "1.0-alpha"
+  },
+  "ICASA-VARIABLES": {
+    "contact": {
+      "email": "willis8@illinois.edu",
+      "name": "Craig Willis"
+    },
+    "description": "Ontology based on the ICASA version 2.0 data standard. The foundation of the standard is a master list of variables with major separations among descriptions of management practices or treatments, environmental conditions (soil and weather data), and measurements of crop responses as described in White et al (2013)., and measurements of crop responses as described in White et al (2013).",
+    "homepage": "https://github.com/craig-willis/icasa",
+    "name": "Variables: ICASA ontology for integrated description of agricultural field experiments and production",
+    "prefix": "ICASA-VARIABLES",
+    "repository": "https://github.com/craig-willis/icasa",
+    "version": "1.0-alpha"
+  },
+  "ICASA-VU": {
+    "contact": {
+      "email": "willis8@illinois.edu",
+      "name": "Craig Willis"
+    },
+    "description": "Ontology intended to model variables and units capturing the ICASA measured data variables as well as CF standard names and BETYdb variables., Ontology intended to model variables and units capturing the ICASA measured data variables as well as CF standard names and BETYdb variables.",
+    "homepage": "https://github.com/craig-willis/icasa",
+    "name": "ICASA Ontology for Variables and Units",
+    "prefix": "ICASA-VU",
+    "repository": "https://github.com/craig-willis/icasa",
+    "version": "1.0-alpha"
+  },
   "ICC": {
     "contact": {
       "email": "faq-hq@fao.org",
@@ -2118,12 +2040,21 @@
       "email": "jeanlouisjanin@gmail.com",
       "name": "Jean-Louis Janin"
     },
-    "description": "The aim of the Lexeau® project is to promote cross-comprehension between those involved in the water sector - scientists, engineers, technicians, administrative staff and lawyers - in their respective areas of expertise, and with the general public. It includes the production of LEXEAU, a bilingual ontology, as a source of the water lexicon published by the Académie de l'Eau. - Le projet Lexeau® a pour but de promouvoir l'intercompréhension entre les acteurs du domaine de l'eau, scientifiques, ingénieurs, techniciens, administratifs et juristes, dans leur domaine de compétence, et avec le grand public. Il comprend la production de LEXEAU, une ontologie bilingue, comme source du lexique de publié par l'Académie de l'Eau.",
+    "description": "The aim of the Lexeau® project is to promote cross-comprehension between those involved in the water sector - scientists, engineers, technicians, administrative staff and lawyers - in their respective areas of expertise, and with the general public. It includes the production of LEXEAU, a bilingual ontology, as a source of the water lexicon published by the Académie de l'Eau. - Le projet Lexeau® a pour but de promouvoir l'intercompréhension entre les acteurs du domaine de l'eau, scientifiques, ingénieurs, techniciens, administratifs et juristes, dans leur domaine de compétence, et avec le grand public. Il comprend la production de LEXEAU, une ontologie bilingue, comme source du lexique de l'eau publié par l'Académie de l'Eau.",
     "license": "CC-BY-4.0",
     "name": "A lexicon of water related textual and geophysicla data - Un lexique de données textuelles et géophysiques sur l'eau",
     "prefix": "LEXEAU",
     "version": "2.4"
   },
+  "LEXIQUE": {
+    "contact": {
+      "email": "jeanlouisjanin@gmail.com",
+      "name": "Jean-Louis Janin"
+    },
+    "description": "Derived from the LEXEAU ontology version 2.4 on 2026-01-13, as the core of other stratified technical lexicons",
+    "name": "Un noyau conceptuel pour élaborer des lexiques techniques stratifiés des ressources naturelles",
+    "prefix": "LEXIQUE"
+  },
   "LHO": {
     "contact": {
       "email": "saba.noor@ugent.be",
@@ -2594,6 +2525,9 @@
     "license": "CC-BY-4.0",
     "name": "Plant Phenotype Experiment Ontology",
     "prefix": "PPEO",
+    "publications": [
+      "https://doi.org/10.1111/nph.16544"
+    ],
     "repository": "https://github.com/MIAPPE/MIAPPE-ontology",
     "version": "1.1-beta"
   },
@@ -2638,7 +2572,7 @@
       "https://planteome.org/references"
     ],
     "repository": "https://github.com/Planteome/plant-stress-ontology",
-    "version": "2025-12-16"
+    "version": "2026-01-08"
   },
   "REPO": {
     "contact": {
@@ -3227,7 +3161,7 @@
       "https://doi.org/10.1093/database/bas033"
     ],
     "repository": "https://github.com/bio-ontology-research-group/unit-ontology",
-    "version": "2026-01-09"
+    "version": "2026-01-16"
   },
   "USE": {
     "contact": {

bioregistry/external/bioportal/ecoportal.json

@@ -550,6 +550,16 @@
       "https://thesaurus.geolba.ac.at/bibl_res.html?proj=GeologicUnit"
     ]
   },
+  "GEOSP": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV Migration"
+    },
+    "description": "The GeoSpecies Ontology is used to describe geographical distribution of living species.",
+    "name": "GeoSpecies Ontology",
+    "prefix": "GEOSP",
+    "version": "v2012-10-02"
+  },
   "GEO_STRUCTURES": {
     "contact": {
       "email": "thesaurus@geologie.ac.at",
@@ -820,6 +830,17 @@
     "repository": "https://github.com/PopulationAndCommunityOntology/pco",
     "version": "2021-05-03"
   },
+  "PECO": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV Migration"
+    },
+    "description": "This ontology defines a vocabulary for describing provenance traces of carbon emission calculations by capturing the quantifiable measurements of carbon emission sources used by some activities (e.g., electricity used by a machinery to produce a product, petrol used to make a car journey, etc.) and emission conversion factors used to estimate the carbon emissions produced by these. In addition, the ontology provides the ability to capture various data transformations that occurred before energy estimates may be used with relevant conversion factors. For example, sensors may provide raw readings about a water flow of an irrigation rig in an agri-food operation which is then used as a proxy to estimate the total volume of fertilisers used.",
+    "license": "CC-BY-4.0",
+    "name": "The Provenance of Emission Calculations Ontology",
+    "prefix": "PECO",
+    "version": "1.0.0"
+  },
   "PHYTOTRAITS": {
     "contact": {
       "email": "elena.stanca@unisalento.it",

bioregistry/external/fairsharing/processed.json

@@ -14312,7 +14312,7 @@
       "protein",
       "target"
     ],
-    "homepage": "http://bioassayontology.org",
+    "homepage": "http://bioassayontology.org/bioassayontology/",
     "license": "CC-BY-4.0",
     "name": "BioAssay Ontology",
     "publications": [