bioregistry 0.13.17__py3-none-any.whl → 0.13.18__py3-none-any.whl

bioregistry/data/bioregistry.json

@@ -1485,7 +1485,7 @@
   "aeo": {
     "aberowl": {
       "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology",
-      "download_owl": "http://aber-owl.net/media/ontologies/AEO/8/aeo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/AEO/9/aeo.owl",
       "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
       "name": "Anatomical Entity Ontology",
       "prefix": "AEO"
@@ -1572,7 +1572,9 @@
       "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
       "name": "Anatomical Entity Ontology",
       "prefix": "aeo",
-      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
+      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
+      "version": "2022-09-13",
+      "version.iri": "http://purl.obolibrary.org/obo/aeo/releases/2022-09-13/aeo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -4230,8 +4232,8 @@
       "name": "Ascomycete Phenotype Ontology (APO)",
       "prefix": "apo",
       "tracker": "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues",
-      "version": "2025-12-19",
-      "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-12-19/apo.owl"
+      "version": "2026-01-12",
+      "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2026-01-12/apo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -6896,7 +6898,7 @@
         "protein",
         "target"
       ],
-      "homepage": "http://bioassayontology.org",
+      "homepage": "http://bioassayontology.org/bioassayontology/",
       "license": "CC-BY-4.0",
       "name": "BioAssay Ontology",
       "prefix": "FAIRsharing.mye76w",
@@ -15710,7 +15712,7 @@
     "re3data": {
       "description": "This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The Cell Image Library has been merged with \"Cell Centered Database\" in 2017. The purpose of the database is to advance research on cellular activity, with the ultimate goal of improving human health.",
       "doi": "10.17616/R3Z59M",
-      "homepage": "http://www.cellimagelibrary.org/home",
+      "homepage": "https://www.cellimagelibrary.org/home",
       "name": "Cell Image Library",
       "prefix": "r3d100000023",
       "synonyms": [
@@ -16749,7 +16751,7 @@
   "chebi": {
     "aberowl": {
       "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
-      "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/209/chebi.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/210/chebi.owl",
       "homepage": "http://www.ebi.ac.uk/chebi",
       "name": "Chemical Entities of Biological Interest",
       "prefix": "CHEBI"
@@ -21137,8 +21139,8 @@
       "name": "Clinical measurement ontology",
       "prefix": "cmo",
       "tracker": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues",
-      "version": "2.260",
-      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.260/cmo.owl"
+      "version": "2.261",
+      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.261/cmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -34112,8 +34114,8 @@
       "name": "Drosophila Phenotype Ontology",
       "prefix": "dpo",
       "tracker": "https://github.com/FlyBase/drosophila-phenotype-ontology/issues",
-      "version": "2025-10-17",
-      "version.iri": "http://purl.obolibrary.org/obo/dpo/releases/2025-10-17/dpo.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/dpo/releases/2026-01-13/dpo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -36996,7 +36998,7 @@
   "eco": {
     "aberowl": {
       "description": "An ontology for experimental and other evidence statements.",
-      "download_owl": "http://aber-owl.net/media/ontologies/ECO/115/eco.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/ECO/116/eco.owl",
       "homepage": "https://www.evidenceontology.org",
       "name": "Evidence and Conclusion Ontology",
       "prefix": "ECO"
@@ -37167,8 +37169,8 @@
       "name": "Evidence & Conclusion Ontology (ECO)",
       "prefix": "eco",
       "tracker": "https://github.com/evidenceontology/evidenceontology/issues",
-      "version": "2025-06-23",
-      "version.iri": "http://purl.obolibrary.org/obo/eco/releases/2025-06-23/eco.owl"
+      "version": "2026-01-09",
+      "version.iri": "http://purl.obolibrary.org/obo/eco/releases/2026-01-09/eco.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -38517,7 +38519,7 @@
       "name": "Experimental Factor Ontology",
       "prefix": "EFO",
       "repository": "https://github.com/EBISPOT/efo",
-      "version": "3.85.0"
+      "version": "3.86.0"
     },
     "biocontext": {
       "prefix": "EFO"
@@ -39117,8 +39119,8 @@
   "ehdaa2": {
     "aberowl": {
       "description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.",
-      "download_owl": "http://aber-owl.net/media/ontologies/EHDAA2/33/ehdaa2.owl",
-      "homepage": "http://genex.hgu.mrc.ac.uk/",
+      "download_owl": "http://aber-owl.net/media/ontologies/EHDAA2/34/ehdaa2.owl",
+      "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology",
       "name": "Human developmental anatomy, abstract",
       "prefix": "EHDAA2"
     },
@@ -39466,11 +39468,10 @@
     },
     "ols": {
       "description": "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).",
+      "download_owl": "http://purl.obolibrary.org/obo/emap.owl",
       "homepage": "http://emouseatlas.org",
       "name": "Mouse gross anatomy and development, timed",
-      "prefix": "emap",
-      "version": "2020-04-13",
-      "version.iri": "http://purl.obolibrary.org/obo/emap/releases/2020-04-13/emap.owl"
+      "prefix": "emap"
     },
     "pattern": "^\\d+$",
     "prefixcommons": {
@@ -39597,7 +39598,7 @@
           "title": "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)"
         }
       ],
-      "repository": "https://github.com/obophenotype/mouse-anatomy-ontology"
+      "repository": "https://github.com/obophenotype/developmental-mouse-anatomy-ontology"
     },
     "ols": {
       "description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.",
@@ -45652,8 +45653,8 @@
       "name": "Drosophila gross anatomy",
       "prefix": "fbbt",
       "tracker": "http://purl.obolibrary.org/obo/fbbt/tracker",
-      "version": "2025-10-16",
-      "version.iri": "http://purl.obolibrary.org/obo/fbbt/releases/2025-10-16/fbbt.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/fbbt/releases/2026-01-13/fbbt.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -45807,8 +45808,8 @@
       "name": "FlyBase Controlled Vocabulary",
       "prefix": "fbcv",
       "tracker": "https://github.com/FlyBase/flybase-controlled-vocabulary/issues",
-      "version": "2025-10-17",
-      "version.iri": "http://purl.obolibrary.org/obo/fbcv/releases/2025-10-17/fbcv.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/fbcv/releases/2026-01-13/fbcv.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -45934,8 +45935,8 @@
       "name": "Drosophila development",
       "prefix": "fbdv",
       "tracker": "http://purl.obolibrary.org/obo/fbdv/tracker",
-      "version": "2025-10-16",
-      "version.iri": "http://purl.obolibrary.org/obo/fbdv/releases/2025-10-16/fbdv.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/fbdv/releases/2026-01-13/fbdv.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -58891,7 +58892,7 @@
       "name": "HUGO Gene Nomenclature Committee",
       "prefix": "hgnc",
       "uri_format": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1",
-      "version.iri": "https://w3id.org/biopragmatics/resources/hgnc/2025-10-07/hgnc.ofn"
+      "version.iri": "https://w3id.org/biopragmatics/resources/hgnc/2026-01-06/hgnc.ofn"
     },
     "pattern": "^\\d{1,5}$",
     "prefixcommons": {
@@ -60396,7 +60397,7 @@
       "maintainer": "NCBI (National Center for Biotechnology Information)",
       "name": "HomoloGene",
       "prefix": "nbdc00101",
-      "status": "Active",
+      "status": "Closed",
       "target_keywords": [
         "Genome/Gene",
         "Protein"
@@ -60905,8 +60906,8 @@
       "name": "Human Phenotype Ontology",
       "prefix": "hp",
       "tracker": "https://github.com/obophenotype/human-phenotype-ontology/issues/",
-      "version": "2025-11-24",
-      "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2025-11-24/hp-international.owl"
+      "version": "2026-01-08",
+      "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2026-01-08/hp-international.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -63929,7 +63930,6 @@
   },
   "iconclass": {
     "bartoc": {
-      "abbreviation": "ICONCLASS",
       "description": "Iconclass is a subject-specific classification system. It is a hierarchically ordered collection of definitions of objects, people, events and abstract ideas that serve as the subject of an image. Art historians, researchers and curators use it to describe, classify and examine the subject of images represented in various media such as paintings, drawings and photographs. Numerous institutions across the world use Iconclass to describe and classify their collections in a standardized manner. In turn, users ranging from art historians to museum visitors use Iconclass to search and retrieve images from these collections. And as a research tool, Iconclass is also used to identify the significance of entire scenes or individual elements represented within an image. ICONCLASS applications used around the world have made it the most widely accepted classification system for visual documents. The three main components of Iconclass are: Classification System: 28,000 hierarchically ordered definitions divided into ten main divisions. Each definition consists of an alphanumeric classification code (notation) and the description of the iconographic subject (textual correlate). The definitions are used to index, catalogue and describe the subjects of images represented in works of art, reproductions, photographs and other sources. Alphabetical Index: 14,000 keywords used for locating the notation and its textual correlate needed to describe and/or index an image. Bibliography: 40,000 references to books and articles of iconographical interest (not yet online).",
       "homepage": "https://iconclass.org/",
       "license": "ODBL",
@@ -75243,7 +75243,7 @@
   "ma": {
     "aberowl": {
       "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus).",
-      "download_owl": "http://aber-owl.net/media/ontologies/MA/127/ma.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MA/128/ma.owl",
       "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
       "name": "Mouse adult gross anatomy",
       "prefix": "MA"
@@ -75360,7 +75360,9 @@
       "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
       "name": "Mouse adult gross anatomy",
       "prefix": "ma",
-      "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues"
+      "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues",
+      "version": "2026-01-09",
+      "version.iri": "http://purl.obolibrary.org/obo/ma/releases/2026-01-09/ma.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -75992,7 +75994,7 @@
     "integbio": {
       "alt_name": "High Resolution Mass Spectral Database",
       "description": "MassBank is a high-resolution mass spectral database that involves the JST-BIRD project, and was developed by the Institute for Advanced Biosciences, Keio University (IAB) Analytical Chemistry Group, and the RIKEN Plant Science Center (PSC) Metabolomics Research Group. MassBank is used to search chemical compounds that have been detected by mass spectrometry for chemical identification, structure detail, similar spectrum search, etc. MassBank was recognized as the official mass spectral database of the Mass Spectrometry Society of Japan in 2008. It also contains the results of the NEDO project.",
-      "homepage": "http://www.massbank.jp/Index",
+      "homepage": "https://massbank.jp/MassBank/",
       "information_keywords": [
         "Method",
         "Chemical structure"
@@ -78962,6 +78964,12 @@
       "prefix": "METPO",
       "version": "2025-12-12"
     },
+    "biolink": {
+      "is_identifiers": false,
+      "is_obo": false,
+      "prefix": "METPO",
+      "uri_format": "https://w3id.org/metpo/$1"
+    },
     "bioportal": {
       "contact": {
         "email": "mam@lbl.gov",
@@ -79000,6 +79008,7 @@
     ],
     "mappings": {
       "aberowl": "METPO",
+      "biolink": "METPO",
       "bioportal": "METPO"
     },
     "name": "Microbial Ecophysiological Trait and Phenotype Ontology",
@@ -82649,7 +82658,7 @@
   "mmo": {
     "aberowl": {
       "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MMO/119/mmo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MMO/120/mmo.owl",
       "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
       "name": "Measurement method ontology",
       "prefix": "MMO"
@@ -84197,7 +84206,7 @@
   "mondo": {
     "aberowl": {
       "description": "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MONDO/108/mondo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MONDO/109/mondo.owl",
       "homepage": "https://monarch-initiative.github.io/mondo",
       "name": "Mondo Disease Ontology",
       "prefix": "MONDO"
@@ -85245,8 +85254,8 @@
       "name": "MHC Restriction Ontology",
       "prefix": "mro",
       "tracker": "https://github.com/IEDB/MRO/issues",
-      "version": "2025-10-29",
-      "version.iri": "http://purl.obolibrary.org/obo/mro/2025-10-29/mro.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/mro/2026-01-13/mro.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -85268,7 +85277,7 @@
   "ms": {
     "aberowl": {
       "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MS/228/ms.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MS/229/ms.owl",
       "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
       "name": "Mass spectrometry ontology",
       "prefix": "MS"
@@ -85361,8 +85370,8 @@
       "name": "Mass spectrometry ontology",
       "prefix": "ms",
       "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
-      "version": "4.1.223",
-      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.223/ms.owl"
+      "version": "4.1.226",
+      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.226/ms.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -93208,7 +93217,7 @@
   "obi": {
     "aberowl": {
       "description": "An integrated ontology for the description of life-science and clinical investigations",
-      "download_owl": "http://aber-owl.net/media/ontologies/OBI/62/obi.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/OBI/63/obi.owl",
       "homepage": "http://obi-ontology.org",
       "name": "Ontology for Biomedical Investigations",
       "prefix": "OBI"
@@ -95134,7 +95143,7 @@
   "ohmi": {
     "aberowl": {
       "description": "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions.",
-      "download_owl": "http://aber-owl.net/media/ontologies/OHMI/16/ohmi.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/OHMI/17/ohmi.owl",
       "homepage": "https://github.com/ohmi-ontology/ohmi",
       "name": "Ontology of Host-Microbiome Interactions",
       "prefix": "OHMI"
@@ -96787,7 +96796,7 @@
   "omrse": {
     "aberowl": {
       "description": "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations.",
-      "download_owl": "http://aber-owl.net/media/ontologies/OMRSE/63/omrse.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/OMRSE/64/omrse.owl",
       "homepage": "https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview",
       "name": "Ontology for Modeling and Representation of Social Entities",
       "prefix": "OMRSE"
@@ -102534,6 +102543,17 @@
       "version": "v2025-10-30"
     },
     "download_obo": "https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo",
+    "ecoportal": {
+      "contact": {
+        "email": "mohamed-el-amine.boukerfa@inrae.fr",
+        "name": "LOV Migration"
+      },
+      "description": "This ontology defines a vocabulary for describing provenance traces of carbon emission calculations by capturing the quantifiable measurements of carbon emission sources used by some activities (e.g., electricity used by a machinery to produce a product, petrol used to make a car journey, etc.) and emission conversion factors used to estimate the carbon emissions produced by these. In addition, the ontology provides the ability to capture various data transformations that occurred before energy estimates may be used with relevant conversion factors. For example, sensors may provide raw readings about a water flow of an irrigation rig in an agri-food operation which is then used as a proxy to estimate the total volume of fertilisers used.",
+      "license": "CC-BY-4.0",
+      "name": "The Provenance of Emission Calculations Ontology",
+      "prefix": "PECO",
+      "version": "1.0.0"
+    },
     "example": "0007114",
     "fairsharing": {
       "abbreviation": "PECO",
@@ -102568,6 +102588,7 @@
       "agroportal": "PECO",
       "biocontext": "PECO",
       "bioportal": "PECO",
+      "ecoportal": "PECO",
       "fairsharing": "FAIRsharing.6yNXYK",
       "obofoundry": "peco",
       "ols": "peco",
@@ -103885,11 +103906,11 @@
     "pattern": "^\\d+$",
     "publications": [
       {
-        "doi": "10.1093/nar/gkae1220",
+        "doi": "10.1093/nar/gkae878",
         "pmc": "PMC11701545",
         "pubmed": "39373542",
         "title": "PhageDive: the comprehensive strain database of prokaryotic viral diversity",
-        "year": 2024
+        "year": 2025
       }
     ],
     "re3data": {
@@ -107085,8 +107106,8 @@
       "name": "Plant Ontology",
       "prefix": "po",
       "tracker": "https://github.com/Planteome/plant-ontology/issues",
-      "version": "2025-10-31",
-      "version.iri": "http://purl.obolibrary.org/obo/po/releases/2025-10-31/po.owl"
+      "version": "2026-01-09",
+      "version.iri": "http://purl.obolibrary.org/obo/po/releases/2026-01-09/po.owl"
     },
     "ontobee": {
       "library": "Foundry",
@@ -107861,6 +107882,9 @@
       "license": "CC-BY-4.0",
       "name": "Plant Phenotype Experiment Ontology",
       "prefix": "PPEO",
+      "publications": [
+        "https://doi.org/10.1111/nph.16544"
+      ],
       "repository": "https://github.com/MIAPPE/MIAPPE-ontology",
       "version": "1.1-beta"
     },
@@ -110298,7 +110322,7 @@
   "pso": {
     "aberowl": {
       "description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.",
-      "download_owl": "http://aber-owl.net/media/ontologies/PSO/6/pso.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/PSO/7/pso.owl",
       "homepage": "https://github.com/Planteome/plant-stress-ontology",
       "name": "Plant Stress Ontology",
       "prefix": "PSO"
@@ -110319,7 +110343,7 @@
         "https://planteome.org/references"
       ],
       "repository": "https://github.com/Planteome/plant-stress-ontology",
-      "version": "2025-12-16"
+      "version": "2026-01-08"
     },
     "bioportal": {
       "contact": {
@@ -110392,8 +110416,8 @@
       "name": "Plant Stress Ontology",
       "prefix": "pso",
       "tracker": "https://github.com/Planteome/plant-stress-ontology/issues",
-      "version": "2025-12-16",
-      "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2025-12-16/pso.owl"
+      "version": "2026-01-08",
+      "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2026-01-08/pso.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -111604,8 +111628,8 @@
       "name": "Pathway ontology",
       "prefix": "pw",
       "tracker": "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues",
-      "version": "7.96",
-      "version.iri": "http://purl.obolibrary.org/obo/pw/7.96/pw.owl"
+      "version": "7.97",
+      "version.iri": "http://purl.obolibrary.org/obo/pw/7.97/pw.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -115014,6 +115038,59 @@
     ],
     "uri_format": "https://www.ribocentre.org/docs/$1"
   },
+  "ribocirc": {
+    "contact": {
+      "email": "xiezhi@gmail.com",
+      "name": "Zhi Xie",
+      "orcid": "0000-0002-7736-5548"
+    },
+    "contributor": {
+      "email": "ji.kang@northeastern.edu",
+      "github": "kanghosaeyo",
+      "name": "Kangho Ji",
+      "orcid": "0009-0009-3402-8013"
+    },
+    "description": "Identifiers represent computationally predicted and experimentally verified translatable circular RNAs (circRNAs) across six model species (human, mouse, rat, worm, fly, and zebrafish), including ribosome-associated circRNAs and their encoded peptides with systematic annotation of sequence, structure, and function.",
+    "example": "hsa_ribocircSCD_001",
+    "example_extras": [
+      "mmu_ribocircCoil_001",
+      "rno_ribocircVps13b_003",
+      "dme_ribocirccdi_001",
+      "cel_ribocircF54A3.3_001",
+      "dre_ribocircim:7151449_001"
+    ],
+    "github_request_issue": 1798,
+    "homepage": "http://www.ribocirc.com",
+    "keywords": [
+      "circrna",
+      "peptides",
+      "ribosome profiling",
+      "translation"
+    ],
+    "name": "riboCIRC",
+    "pattern": "^(hsa|mmu|rno|cel|dme|dre)_ribocirc[A-Za-z0-9.:]+_\\d{3}$",
+    "publications": [
+      {
+        "doi": "10.1093/nar/gkaf1022",
+        "pubmed": "41118507",
+        "title": "riboCIRC v2.0: an expanded resource for translatable CircRNAs",
+        "year": 2025
+      },
+      {
+        "doi": "10.1186/s13059-021-02300-7",
+        "pubmed": "33685493",
+        "title": "riboCIRC: a comprehensive database of translatable circRNAs",
+        "year": 2021
+      }
+    ],
+    "reviewer": {
+      "email": "b.gyori@northeastern.edu",
+      "github": "bgyori",
+      "name": "Benjamin M. Gyori",
+      "orcid": "0000-0001-9439-5346"
+    },
+    "uri_format": "http://www.ribocirc.com/rna_detail.php?circ_id=$1"
+  },
   "ricecyc": {
     "mappings": {
       "pathguide": "227",
@@ -116180,7 +116257,7 @@
       "name": "Research Organization Registry",
       "prefix": "ror",
       "uri_format": "https://ror.org/$1",
-      "version.iri": "https://w3id.org/biopragmatics/resources/ror/1.36/ror.ofn"
+      "version.iri": "https://w3id.org/biopragmatics/resources/ror/2.0/ror.ofn"
     }
   },
   "rosetta": {
@@ -116573,7 +116650,7 @@
   "rs": {
     "aberowl": {
       "description": "Ontology of rat strains",
-      "download_owl": "http://aber-owl.net/media/ontologies/RS/203/rs.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/RS/204/rs.owl",
       "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
       "name": "Rat Strain Ontology",
       "prefix": "RS"
@@ -126175,7 +126252,7 @@
     "description": "Identifers for natural products isolated or mutasynthesized by bacteria of the genus Streptomyces.",
     "example": "15753",
     "github_request_issue": 1287,
-    "homepage": "http://streptomedb.vm.uni-freiburg.de:8000/streptomedb",
+    "homepage": "http://streptomedb.vm.uni-freiburg.de/streptomedb",
     "name": "StreptomeDB",
     "pattern": "^\\d+$",
     "publications": [
@@ -126213,7 +126290,7 @@
       "name": "Benjamin M. Gyori",
       "orcid": "0000-0001-9439-5346"
     },
-    "uri_format": "http://streptomedb.vm.uni-freiburg.de:8000/streptomedb/get_drugcard/$1"
+    "uri_format": "http://streptomedb.vm.uni-freiburg.de/streptomedb/get_drugcard/$1"
   },
   "string": {
     "biocontext": {
@@ -136181,8 +136258,8 @@
       "name": "Plant Trait Ontology",
       "prefix": "to",
       "tracker": "https://github.com/Planteome/plant-trait-ontology/issues",
-      "version": "2025-11-07",
-      "version.iri": "http://purl.obolibrary.org/obo/to/releases/2025-11-07/to.owl"
+      "version": "2026-01-14",
+      "version.iri": "http://purl.obolibrary.org/obo/to/releases/2026-01-14/to.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -140586,7 +140663,7 @@
   "uo": {
     "aberowl": {
       "description": "Metrical units for use in conjunction with PATO",
-      "download_owl": "http://aber-owl.net/media/ontologies/UO/61/uo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/UO/62/uo.owl",
       "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
       "name": "Units of measurement ontology",
       "prefix": "UO"
@@ -140606,7 +140683,7 @@
         "https://doi.org/10.1093/database/bas033"
       ],
       "repository": "https://github.com/bio-ontology-research-group/unit-ontology",
-      "version": "2026-01-09"
+      "version": "2026-01-16"
     },
     "biocontext": {
       "prefix": "UO"
@@ -140708,6 +140785,7 @@
       "deprecated": false,
       "description": "Metrical units for use in conjunction with PATO",
       "domain": "phenotype",
+      "download.json": "http://purl.obolibrary.org/obo/uo.json",
       "download.obo": "http://purl.obolibrary.org/obo/uo.obo",
       "download.owl": "http://purl.obolibrary.org/obo/uo.owl",
       "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
@@ -140731,8 +140809,8 @@
       "name": "Units of measurement ontology",
       "prefix": "uo",
       "tracker": "https://github.com/bio-ontology-research-group/unit-ontology/issues",
-      "version": "2023-05-25",
-      "version.iri": "http://purl.obolibrary.org/obo/uo/releases/2023-05-25/uo.owl"
+      "version": "2026-01-09",
+      "version.iri": "http://purl.obolibrary.org/obo/uo/releases/2026-01-09/uo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -144163,7 +144241,7 @@
   "vt": {
     "aberowl": {
       "description": "An ontology of traits covering vertebrates",
-      "download_owl": "http://aber-owl.net/media/ontologies/VT/141/vt.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/VT/142/vt.owl",
       "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
       "name": "Vertebrate trait ontology",
       "prefix": "VT"
@@ -144266,8 +144344,8 @@
       "name": "The Vertebrate Trait Ontology",
       "prefix": "vt",
       "tracker": "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues",
-      "version": "2025-12-02",
-      "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-12-02/vt.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2026-01-13/vt.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -146824,7 +146902,7 @@
   "xco": {
     "aberowl": {
       "description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.",
-      "download_owl": "http://aber-owl.net/media/ontologies/XCO/154/xco.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/XCO/155/xco.owl",
       "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000",
       "name": "Experimental condition ontology",
       "prefix": "XCO"
@@ -146933,8 +147011,8 @@
       "name": "Experimental condition ontology",
       "prefix": "xco",
       "tracker": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues",
-      "version": "4.222",
-      "version.iri": "http://purl.obolibrary.org/obo/xco/4.222/xco.owl"
+      "version": "4.223",
+      "version.iri": "http://purl.obolibrary.org/obo/xco/4.223/xco.owl"
     },
     "ontobee": {
       "library": "Library",

bioregistry/data/curated_papers.tsv

@@ -1,6 +1,7 @@
 pubmed	relevant	orcid	date_curated	relevancy_type	pr_added	notes
 30380085	1	0009-0009-3402-8013	2025-10-07	new_prefix	1714	Publication for dbamp
 31836719	1	0009-0009-3402-8013	2025-10-09	new_prefix	1724	Publication for nfportal.tool
+33685493	1	0009-0009-3402-8013	2025-12-24	new_prefix	1798	Publication for ribocirc
 34850155	1	0009-0009-3402-8013	2025-10-07	new_publication	1714	Publication for dbamp 2.0
 38530613	1	0009-0009-3402-8013	2025-10-30	new_provider	1730	Publication for dotad
 38991828	0	0009-0009-5240-7463	2024-09-28	irrelevant_other	1193	
@@ -364,3 +365,4 @@ pubmed	relevant	orcid	date_curated	relevancy_type	pr_added	notes
 40842115	1	0009-0009-3402-8013	2025-11-25	new_prefix	1771	Publication for molgluedb
 41087926	1	0009-0009-3402-8013	2025-12-21	new_prefix	1796	Publication for pahg
 41099621	1	0009-0009-3402-8013	2025-12-26	new_prefix	1799	Publication for pmads
+41118507	1	0009-0009-3402-8013	2025-12-24	new_prefix	1798	Publication for ribocirc v2.0