bioregistry 0.13.13__py3-none-any.whl → 0.13.15__py3-none-any.whl

bioregistry/external/bioportal/agroportal.json

@@ -66,13 +66,17 @@
   },
   "AFY": {
     "contact": {
-      "email": "raphael.condesalazar@online.fr",
-      "name": "Raphaël CONDE SALAZAR"
+      "email": "raphael.conde-salazar@inrae.fr",
+      "name": "Raphaël Conde Salazar"
     },
-    "description": "Agroforestry Ontology is a knowledge model that provides a unifying framework for structuring agroforestry data and knowledge., Ontologie des systèmes agroforestiers, Ontology of agroforestry systems",
+    "description": "Agroforestry Ontology is a knowledge model that provides a unifying framework for structuring agroforestry data and knowledge. It's an ontology designed to define the different types of agroforestry systems., Ontologie des systèmes agroforestiers, Ontology of agroforestry systems",
+    "example_uri": "https://agroportal.lirmm.fr/check_resolvability?url=https://w3id.org/afy/StructuralElement",
     "license": "CC-BY-4.0",
     "name": "Agroforestry Ontology",
     "prefix": "AFY",
+    "publications": [
+      "https://hal.inrae.fr/tel-03519007v1"
+    ],
     "version": "1.0.0"
   },
   "AGFOOD": {
@@ -325,7 +329,7 @@
       "https://hal.science/hal-04638343"
     ],
     "repository": "https://forgemia.inra.fr/bsv/bio-agressor-ontology",
-    "version": "1.1"
+    "version": "1.2"
   },
   "BCO": {
     "contact": {
@@ -575,7 +579,7 @@
     "name": "Cell Ontology",
     "prefix": "CL",
     "repository": "https://github.com/obophenotype/cell-ontology",
-    "version": "2025-11-25"
+    "version": "2025-12-17"
   },
   "CLC": {
     "contact": {
@@ -1344,7 +1348,11 @@
     },
     "description": "It is already known that the diet of the world’s population has a massive impact on climate change. However, how climate change affects the growing conditions of ingredients for different foods and beverages, and emission rates due to, for example, production and logistics are still not known. In this work, different datasets have been explored to study the feasibility of interlinking datasets to automatically generate alternatives for climate change-sensitive food items selection and substitution. A core question to be answered is what the alternatives of the mostly consumed crops in current diets in the Netherlands in case of a climate change can be. The main crop attributes taken into account are nutritional composition and the growing conditions. The growing conditions of three most-consumed crops in the Netherlands have been linked manually to their nutritional composition data and a corresponding knowledge graph is created. This study shows that linking various data semantically promises to generate alternatives automatically. The ECOCROP Ontology contains e.g. growing temperatures for crops: https://git.wur.nl/FoodInformatics/i-know-foo/-/tree/main/ECOCROP%20Ontology. We created it from FAO’s ECOCROP datasource, which - along with how we explored its use - is described in our paper: https://link.springer.com/chapter/10.1007/978-3-031-53770-7_7.",
     "name": "ECOCROP Ontology",
-    "prefix": "ECOCROP"
+    "prefix": "ECOCROP",
+    "publications": [
+      "https://doi.org/10.1007/978-3-031-53770-7_7"
+    ],
+    "repository": "https://git.wur.nl/FoodInformatics/i-know-foo/-/tree/main/ECOCROP%20Ontology"
   },
   "ECTO": {
     "contact": {
@@ -1382,14 +1390,14 @@
       "email": "efo-users@lists.sourceforge.net",
       "name": "EFO User List"
     },
-    "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. EFO is developed by the EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT). We also add terms for external users when requested.",
+    "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. EFO is developed by the EMBL-EBI Samples, Phenotypes and Ontologies Team (SPOT). We also add terms for external users when requested., and for projects such as the NHGRI-EBI GWAS catalog. It combines parts of several biological ontologies, Cell Ontology and the Monarch Disease Ontology (MONDO). The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.",
     "example_uri": "http://www.orpha.net/ORDO/Orphanet_1390",
     "homepage": "http://www.ebi.ac.uk/efo/",
     "license": "Apache 2.0 License",
     "name": "Experimental Factor Ontology",
     "prefix": "EFO",
     "repository": "https://github.com/EBISPOT/efo",
-    "version": "3.84.0"
+    "version": "3.85.0"
   },
   "ENVO": {
     "contact": {
@@ -1934,7 +1942,7 @@
       "email": "jeanlouisjanin@gmail.com",
       "name": "Jean-Louis Janin"
     },
-    "description": "The aim of the Lexeau® project is to promote cross-comprehension between those involved in the water sector - scientists, engineers, technicians, administrative staff and lawyers - in their respective areas of expertise, and with the general public. It includes the production of LEXEAU, a multilingual ontology, as a source of bilingual water lexicons published by the Académie de l'Eau. - Le projet Lexeau® a pour but de promouvoir l'intercompréhension entre les acteurs du domaine de l'eau, scientifiques, ingénieurs, techniciens, administratifs et juristes, dans leur domaine de compétence, et avec le grand public. Il comprend la production de LEXEAU, une ontologie multilingue, comme source de lexiques de l'eau bilingues publiés par l'Académie de l'Eau.",
+    "description": "The aim of the Lexeau® project is to promote cross-comprehension between those involved in the water sector - scientists, engineers, technicians, administrative staff and lawyers - in their respective areas of expertise, and with the general public. It includes the production of LEXEAU, a bilingual ontology, as a source of the water lexicon published by the Académie de l'Eau. - Le projet Lexeau® a pour but de promouvoir l'intercompréhension entre les acteurs du domaine de l'eau, scientifiques, ingénieurs, techniciens, administratifs et juristes, dans leur domaine de compétence, et avec le grand public. Il comprend la production de LEXEAU, une ontologie bilingue, comme source du lexique de publié par l'Académie de l'Eau.",
     "license": "CC-BY-4.0",
     "name": "A lexicon of water related textual and geophysicla data - Un lexique de données textuelles et géophysiques sur l'eau",
     "prefix": "LEXEAU",
@@ -1957,7 +1965,7 @@
       "https://github.com/decide-project-eu/LivestockHealthOntology"
     ],
     "repository": "https://github.com/decide-project-eu/LivestockHealthOntologyIntegration-CattlePigPoultryUsecase-",
-    "version": "V1.3"
+    "version": "V1.4"
   },
   "LPT": {
     "contact": {
@@ -2024,7 +2032,7 @@
     "license": "CC-BY-4.0",
     "name": "Multi-scale Multi-step ontology",
     "prefix": "MS2O",
-    "version": "0.2000000000000000111"
+    "version": "0.2"
   },
   "NALT": {
     "contact": {
@@ -2323,7 +2331,7 @@
       "https://doi.org/10.3732/ajb.1200222"
     ],
     "repository": "https://github.com/Planteome/plant-experimental-conditions-ontology",
-    "version": "July 2023"
+    "version": "December 2025"
   },
   "PFEEPSA": {
     "contact": {
@@ -2442,7 +2450,7 @@
       "email": "cooperl@oregonstate.edu",
       "name": "Laurel Cooper"
     },
-    "description": "The Plant Stress Ontology (PSO) describes biotic and abiotic stresses that a plant may encounter. An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies.",
+    "description": "The Plant Stress Ontology (PSO) describes biotic and abiotic stresses that a plant may encounter. An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies., An ontology describing biotic and abiotic plant stresses.",
     "example_uri": "http://purl.obolibrary.org/obo/PSO_0000013",
     "homepage": "https://planteome.org/",
     "license": "CC-BY-4.0",
@@ -2453,7 +2461,7 @@
       "https://planteome.org/references"
     ],
     "repository": "https://github.com/Planteome/plant-stress-ontology",
-    "version": "2023-11-14"
+    "version": "2025-12-16"
   },
   "REPO": {
     "contact": {
@@ -2572,7 +2580,6 @@
       "email": "ga.ubbiali@gmail.com",
       "name": "Giorgio A. Ubbiali"
     },
-    "description": "The Sustainability Core Ontology (SCO) is a middle-level ontology, covering the terminology related to the three major theoretical challenges of sustainability: 1) The polysemy of the term sustainability. 2) The relationship between sustainability and sustainable development. 3) The complexity underlying sustainability. SCO is designed to be the pivotal resource upon which to harmonize and integrate ontologies regarding sustainability. The ultimate goal is to establish a family of interoperable sustainability ontologies. Currently, SCO employs Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO) as the upper-level ontologies. SCO V1.1.0 is the current release and is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO. SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). SCO V1.1.0. covers three natural languages, English, French, and Italian. SCO V1.1.0. conforms to OBO-Foundry principles. The most recent version of SCO-B segment can always be found at https://w3id.org/sco. The most recent version of SCO-U segment can always be found at https://w3id.org/sco/sco-u.",
     "homepage": "https://www.w3id.org/sco/repo",
     "license": "CC-BY-4.0",
     "name": "Sustainability Core Ontology",
@@ -2587,7 +2594,6 @@
       "email": "ga.ubbiali@gmail.com",
       "name": "Giorgio A. Ubbiali"
     },
-    "description": "The Sustainability Core Ontology (SCO) is a middle-level ontology, covering the terminology related to the three major theoretical challenges of sustainability: 1) The polysemy of the term sustainability. 2) The relationship between sustainability and sustainable development. 3) The complexity underlying sustainability. SCO is designed to be the pivotal resource upon which to harmonize and integrate ontologies regarding sustainability. The ultimate goal is to establish a family of interoperable sustainability ontologies. Currently, SCO employs Basic Formal Ontology (BFO) and Unified Foundational Ontology (UFO) as the upper-level ontologies. SCO V1.1.0 is the current release and is comprised of two segments: SCO-B (B for BFO) and SCO-U (U for UFO). SCO-B aligns the SCO vocabulary with BFO. SCO-U aligns the SCO vocabulary with gUFO (UFO implementation in the Web Ontology Language (OWL)). SCO V1.1.0. covers three natural languages, English, French, and Italian. SCO V1.1.0. conforms to OBO-Foundry principles. The most recent version of SCO-B segment can always be found at https://w3id.org/sco. The most recent version of SCO-U segment can always be found at https://w3id.org/sco/sco-u.",
     "homepage": "https://www.w3id.org/sco/repo",
     "license": "CC-BY-4.0",
     "name": "Sustainability Core Ontology - Segment U",

bioregistry/external/bioportal/ecoportal.json

@@ -950,7 +950,8 @@
     "homepage": "https://ecoportal.lifewatch.eu/ontologies/TRAITS_THES",
     "license": "CC-BY-4.0",
     "name": "Traits Thesaurus",
-    "prefix": "TRAITS_THES"
+    "prefix": "TRAITS_THES",
+    "version": "2.1.0"
   },
   "WISE_CLASS": {
     "contact": {

bioregistry/external/fairsharing/processed.json

@@ -2369,7 +2369,7 @@
       "cancer",
       "radiotherapy"
     ],
-    "homepage": "https://www.cancerdata.org/roo-information",
+    "homepage": "https://github.com/RadiationOncologyOntology",
     "license": "CC BY-NC 3.0",
     "name": "Radiation Oncology Ontology",
     "publications": [
@@ -3028,12 +3028,12 @@
       "name": "Valerie Wood",
       "orcid": "0000-0001-6330-7526"
     },
-    "description": "FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource (www.pombase.org). Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions.",
+    "description": "The Fission Yeast Phenotype Ontology (FYPO) is a formal ontology of phenotypes observed in fission yeast. FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource.",
     "domains": [
       "GO-term enrichment data",
       "phenotype"
     ],
-    "homepage": "http://sourceforge.net/apps/trac/pombase/wiki/FissionYeastPhenotypeOntology",
+    "homepage": "https://github.com/pombase/fypo",
     "license": "CC-BY-4.0",
     "name": "Fission Yeast Phenotype Ontology",
     "publications": [
@@ -6928,7 +6928,7 @@
   },
   "FAIRsharing.TrcBD2": {
     "description": "Controlled vocabulary used for indexing bibliographical records dealing with chemistry in the PASCAL database (1972-2015). It is aligned with the terms of the ChEBI (Chemical Entities of Biological Interest), RXNO (name reaction ontology), MOP (molecular process ontology), REX (Physico-chemical process), FIX (Physico-chemical methods and properties), ontologies and the terms of the IUPAC Gold Book. This resource contains 9577 entries in 2 languages (English and French) grouped under 25 collections.",
-    "homepage": "https://loterre.istex.fr/37T/en/",
+    "homepage": "https://doi.org/10.13143/lotr.4642",
     "license": "CC-BY-4.0",
     "name": "Chemistry vocabulary",
     "subjects": [
@@ -8226,20 +8226,13 @@
       "name": "Pascal Derycke",
       "orcid": "0000-0002-4658-5185"
     },
-    "description": "HealthDCAT-AP (https://github.com/healthDCAT-AP) is a health-related extension of the DCAT 3.0.0 application profile for sharing information about Catalogues containing Datasets and Data Services descriptions in Europe (DCAT-AP 3.0.0). It is used as metadata standard in the European Health Data Space (EHDS, https://www.european-health-data-space.com).",
-    "domains": [
-      "Resource metadata",
-      "Annotation"
-    ],
-    "homepage": "https://healthdcat-ap.github.io",
+    "description": "The HealthDCAT Application Profile (HealthDCAT-AP) is a domain-specific metadata model designed to support the implementation of the secondary use framework under the European Health Data Space (EHDS). HealthDCAT-AP includes properties that enable semantically consistent dataset descriptions, structured for automated exchange and federation across catalogues. This ensures that metadata can be processed and integrated into local, regional, national and EU-level catalogues, including the one operated by the central platform of the HealthData@EU infrastructure. HealthDCAT-AP classifies dataset access rights into three categories: non-public, restricted, and public. Each category is defined with specific technical requirements. In addition, controlled vocabularies harmonise property values, with the aim of ensuring comparability and interoperability of dataset descriptions across Member States.",
+    "homepage": "https://healthdataeu.pages.code.europa.eu/healthdcat-ap/releases/release-5/",
     "license": "CC-BY-4.0",
     "name": "health Data CATalogue - Application Profile",
     "subjects": [
-      "Data Management",
-      "Data Integration"
-    ],
-    "user_defined_tags": [
-      "Metadata standardization"
+      "Health Science",
+      "Medicine"
     ]
   },
   "FAIRsharing.b2979t": {
@@ -9894,6 +9887,7 @@
   "FAIRsharing.d67b36": {
     "description": "Terms in this vocabulary relate (abstract) datasets to files or other electronic artefacts, giving the relation between the two. They are originally intended for use in the semantics column in the output from the DataLink-1.0 {links} capability. As specified in DataLink-1.0, terms from this vocabulary are used in the semantics column of {links} output output using only the identifier prefixed with a hash (i.e., \"#word\").",
     "homepage": "https://www.ivoa.net/rdf/datalink/core/",
+    "license": "CC0-1.0",
     "name": "IVOA Vocabulary: Datalink core",
     "subjects": [
       "Astronomy and Astrophysics"
@@ -10419,7 +10413,8 @@
   "FAIRsharing.dqnfkg": {
     "abbreviation": "TGMA",
     "description": "A structured controlled vocabulary of the anatomy of mosquitoes.",
-    "homepage": "https://www.vectorbase.org/ontology-browser",
+    "homepage": "http://purl.obolibrary.org/obo/tgma.owl",
+    "license": "CC0-1.0",
     "name": "Mosquito gross anatomy",
     "publications": [
       {
@@ -10502,12 +10497,13 @@
   },
   "FAIRsharing.dxcjn5": {
     "abbreviation": "GECO",
-    "description": "Agroecology knowledge management is an application ontology for the description and organization of knowledge to design innovative crop systems.",
+    "description": "Agroecology knowledge management is an application ontology for the description and organization of knowledge to design innovative crop systems. The GECO ontology is used to manage the knowledge base, forum and web interface of the GECO platform.",
     "domains": [
       "Cropping systems"
     ],
-    "homepage": "https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/1.4822495904463706E12",
+    "homepage": "https://agroportal.lirmm.fr/ontologies/GECO",
     "license": "CC-BY-4.0",
+    "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbnNIIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--a5a9f26b29575e1ef50fd7a18bcb745ae26735e3/layout_set_logo.png?disposition=inline",
     "name": "Agroecology Knowledge Management",
     "subjects": [
       "Farming Systems Research",
@@ -12822,14 +12818,15 @@
       "name": "Alexander Diehl",
       "orcid": "0000-0001-9990-8331"
     },
-    "description": "The Cell Ontology (CL) is a candidate OBO Foundry ontology for the representation of cell types. First described in 2005, the CL integrates cell types from the prokaryotic, fungal, and eukaryotic organisms. As a core component of the OBO Foundry, the CL merges information contained in species-specific anatomical ontologies as well as referencing other OBO Foundry ontologies such as the Protein Ontology (PR) for uniquely expressed biomarkers and the Gene Ontology (GO) for the biological processes a cell type participates in. The CL is under continuous revision to expand representation of cell types and to better integrate with other biomedical ontologies.",
+    "description": "Cell Ontology (CL) is an ontology designed to classify and describe cell types across different organisms. It serves as a resource for model organism and bioinformatics databases. The ontology covers a broad range of cell types in animal cells, with over 2700 cell type classes, and provides high-level cell type classes as mapping points for cell type classes in ontologies representing other species, such as the Plant Ontology or Drosophila Anatomy Ontology. Integration with other ontologies such as Uberon, GO, CHEBI, PR, and PATO enables linking cell types to anatomical structures, biological processes, and other relevant concepts.\n\nThe Cell Ontology was created in 2004 and has been a core OBO Foundry ontology since the start of the Foundry.",
     "domains": [
       "Annotation",
       "cell",
       "morphology"
     ],
     "homepage": "https://github.com/obophenotype/cell-ontology",
-    "license": "CC-BY-3.0",
+    "license": "CC-BY-4.0",
+    "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbm9IIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--d544c9b28a1342673bbc8f0346aeee1c9220104e/107354015-9375bb00-6ac5-11eb-9394-7318df343ec2.png?disposition=inline",
     "name": "Cell Ontology",
     "publications": [
       {

bioregistry/external/lov/processed.json

@@ -9288,6 +9288,18 @@
     ],
     "homepage": "https://w3id.org/pep/"
   },
+  "pghdprovo": {
+    "name": "Patient Generated Health Data Provenance Ontology",
+    "prefix": "pghdprovo",
+    "uri_prefix": "https://w3id.org/pghdprovo#$1",
+    "description": "Patient Generated Health Data (PGHD) refer to health data collected by patient or their relatives. This ontology seeks to capture information about the data, the provenance and data quality associated with PGHD shared with an EHR.",
+    "modified": "2025-12-23",
+    "keywords": [
+      "Health",
+      "Metadata"
+    ],
+    "homepage": "https://w3id.org/pghdprovo"
+  },
   "pko": {
     "name": "Procedural Knowledge Ontology (PKO)",
     "prefix": "pko",

bioregistry/external/ols/processed.json

@@ -32,8 +32,8 @@
     "name": "Allotrope Merged Ontology Suite",
     "prefix": "afo",
     "uri_format": "http://purl.allotrope.org/ontologies$1",
-    "version": "2025-06-01",
-    "version.iri": "http://purl.allotrope.org/voc/afo/merged/REC/2025/06/merged-without-qudt-and-inferred"
+    "version": "2025-12-01",
+    "version.iri": "http://purl.allotrope.org/voc/afo/merged/REC/2025/12/merged-without-qudt-and-inferred"
   },
   "afpo": {
     "description": "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms.",
@@ -83,8 +83,8 @@
     "name": "Ascomycete Phenotype Ontology (APO)",
     "prefix": "apo",
     "tracker": "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues",
-    "version": "2025-11-10",
-    "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-11-10/apo.owl"
+    "version": "2025-12-19",
+    "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-12-19/apo.owl"
   },
   "apollo_sv": {
     "description": "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.",
@@ -326,8 +326,8 @@
     "name": "Cell Ontology",
     "prefix": "cl",
     "tracker": "https://github.com/obophenotype/cell-ontology/issues",
-    "version": "2025-11-25",
-    "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2025-11-25/cl.owl"
+    "version": "2025-12-17",
+    "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2025-12-17/cl.owl"
   },
   "clao": {
     "description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).",
@@ -387,8 +387,8 @@
     "name": "Core Ontology for Biology and Biomedicine",
     "prefix": "cob",
     "tracker": "https://github.com/OBOFoundry/COB/issues",
-    "version": "2025-06-30",
-    "version.iri": "http://purl.obolibrary.org/obo/cob/releases/2025-06-30/cob.owl"
+    "version": "2025-12-12",
+    "version.iri": "http://purl.obolibrary.org/obo/cob/releases/2025-12-12/cob.owl"
   },
   "colao": {
     "description": "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research.",
@@ -551,8 +551,8 @@
     "name": "The Drug Ontology",
     "prefix": "dron",
     "tracker": "https://github.com/ufbmi/dron/issues",
-    "version": "2025-11-20",
-    "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-11-20/dron.owl"
+    "version": "2025-12-19",
+    "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-12-19/dron.owl"
   },
   "duo": {
     "description": "DUO is an ontology which represent data use conditions.",
@@ -627,14 +627,14 @@
   },
   "efo": {
     "contact": "efo-users@lists.sourceforge.net",
-    "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalogue. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for OpenTargets.org",
+    "description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the NHGRI-EBI GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, Cell Ontology and the Monarch Disease Ontology (MONDO). The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.",
     "download_owl": "http://www.ebi.ac.uk/efo/efo.owl",
     "homepage": "http://www.ebi.ac.uk/efo",
     "name": "Experimental Factor Ontology",
     "prefix": "efo",
     "uri_format": "http://www.ebi.ac.uk/efo/EFO_$1",
-    "version": "3.84.0",
-    "version.iri": "http://www.ebi.ac.uk/efo/releases/v3.84.0/efo.owl"
+    "version": "3.85.0",
+    "version.iri": "http://www.ebi.ac.uk/efo/releases/v3.85.0/efo.owl"
   },
   "ehdaa2": {
     "description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.",
@@ -1331,8 +1331,8 @@
     "name": "Measurement method ontology",
     "prefix": "mmo",
     "tracker": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues",
-    "version": "2.167",
-    "version.iri": "http://purl.obolibrary.org/obo/mmo/2.167/mmo.owl"
+    "version": "2.168",
+    "version.iri": "http://purl.obolibrary.org/obo/mmo/2.168/mmo.owl"
   },
   "mmusdv": {
     "description": "Life cycle stages for Mus Musculus",
@@ -1382,8 +1382,8 @@
     "name": "The Mammalian Phenotype Ontology",
     "prefix": "mp",
     "tracker": "https://github.com/mgijax/mammalian-phenotype-ontology/issues",
-    "version": "2025-11-19",
-    "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-11-19/mp-international.owl"
+    "version": "2025-12-18",
+    "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-12-18/mp-international.owl"
   },
   "mpath": {
     "description": "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes",
@@ -1423,8 +1423,8 @@
     "name": "Mass spectrometry ontology",
     "prefix": "ms",
     "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
-    "version": "4.1.221",
-    "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.221/ms.owl"
+    "version": "4.1.223",
+    "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.223/ms.owl"
   },
   "msio": {
     "description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.",
@@ -1453,8 +1453,8 @@
     "prefix": "ncbitaxon",
     "tracker": "https://github.com/obophenotype/ncbitaxon/issues",
     "uri_format": "http://purl.obolibrary.org/obo/NCBITaxon_$1",
-    "version": "2025-09-11",
-    "version.iri": "http://purl.obolibrary.org/obo/ncbitaxon/2025-09-11/ncbitaxon.owl"
+    "version": "2025-12-03",
+    "version.iri": "http://purl.obolibrary.org/obo/ncbitaxon/2025-12-03/ncbitaxon.owl"
   },
   "ncit": {
     "description": "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.",
@@ -1992,8 +1992,8 @@
     "name": "Plant Stress Ontology",
     "prefix": "pso",
     "tracker": "https://github.com/Planteome/plant-stress-ontology/issues",
-    "version": "2023-11-14",
-    "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2023-11-14/pso.owl"
+    "version": "2025-12-16",
+    "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2025-12-16/pso.owl"
   },
   "pw": {
     "description": "A controlled vocabulary for annotating gene products to pathways.",
@@ -2002,8 +2002,8 @@
     "name": "Pathway ontology",
     "prefix": "pw",
     "tracker": "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues",
-    "version": "7.95",
-    "version.iri": "http://purl.obolibrary.org/obo/pw/7.95/pw.owl"
+    "version": "7.96",
+    "version.iri": "http://purl.obolibrary.org/obo/pw/7.96/pw.owl"
   },
   "rbo": {
     "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
@@ -2012,8 +2012,8 @@
     "name": "Radiation Biology Ontology",
     "prefix": "rbo",
     "tracker": "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues",
-    "version": "2025-11-26",
-    "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-11-26/rbo.owl"
+    "version": "2025-12-11",
+    "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-12-11/rbo.owl"
   },
   "rdfs": {
     "name": "The RDF Schema vocabulary (RDFS)",
@@ -2181,8 +2181,8 @@
     "name": "Space Life Sciences Ontology",
     "prefix": "slso",
     "tracker": "https://github.com/nasa/LSDAO/issues",
-    "version": "2025-12-09",
-    "version.iri": "http://purl.obolibrary.org/obo/slso/releases/2025-12-09/slso.owl"
+    "version": "2025-12-11",
+    "version.iri": "http://purl.obolibrary.org/obo/slso/releases/2025-12-11/slso.owl"
   },
   "snomed": {
     "description": "SNOMED CT or SNOMED Clinical Terms is a systematically organized computer processable collection of medical terms providing codes, terms, synonyms and definitions used in clinical documentation and reporting.",

bioregistry/external/re3data/processed.json

@@ -3008,7 +3008,7 @@
     ]
   },
   "r3d100010303": {
-    "description": "ISRIC - World Soil Information is an independent foundation. As regular member of the ICS World Data System it is also known as World Data Centre for Soils (WDC-Soils). ISRIC was founded in 1966 through the International Soil Science Society (ISSS) and United Nations Educational, Scientific and Cultural Organization (UNESCO), with a mission to \"help to increase the availability and use of soil data, information and knowledge to enable better decision making for sustainable land management around the world\". Our work is organised according to four work streams: 1) Global soil information & standards, 2) Community of practice for soil information providers, 3) Products and services to support SLM (sustainable land management) decision making, and 4) Awareness, education and dialogues. \ndata.isric.org is our central location for searching and downloading soil data bases/maps from around the world. We support Open Data whenever possible, respecting inherited rights (licenses).",
+    "description": "<<<!!!<<<duplicate, entry see: https://www.re3data.org/repository/r3d100013079>>>!!!>>> ISRIC - World Soil Information is an independent foundation. As regular member of the ICS World Data System it is also known as World Data Centre for Soils (WDC-Soils). ISRIC was founded in 1966 through the International Soil Science Society (ISSS) and United Nations Educational, Scientific and Cultural Organization (UNESCO), with a mission to \"help to increase the availability and use of soil data, information and knowledge to enable better decision making for sustainable land management around the world\". Our work is organised according to four work streams: 1) Global soil information & standards, 2) Community of practice for soil information providers, 3) Products and services to support SLM (sustainable land management) decision making, and 4) Awareness, education and dialogues. \ndata.isric.org is our central location for searching and downloading soil data bases/maps from around the world. We support Open Data whenever possible, respecting inherited rights (licenses).",
     "doi": "10.17616/R3X01J",
     "homepage": "https://www.isric.org/",
     "name": "ISRIC - World Soil Information",
@@ -4517,7 +4517,7 @@
     "prefix": "r3d100010468"
   },
   "r3d100010469": {
-    "description": "This data repository allows users to publish animal tracking datasets that have been uploaded to Movebank (https://www.movebank.org/ ). Published datasets have gone through a submission and review process, and are typically associated with a written study published in an academic journal. All animal tracking data in this repository are available to the public.",
+    "description": "This data repository allows users to publish animal tracking datasets that have been uploaded to Movebank (https://www.movebank.org/ ). Published datasets have gone through a submission and review process, and are typically associated with a written study published in an academic journal. All animal tracking data in this repository are available to the public.\nIn addition, analysis workflows assembled via MoveApps (https://www.moveapps.org/) can be published in a persistently citable manner.",
     "doi": "10.17616/R3M024",
     "homepage": "https://datarepository.movebank.org/home",
     "name": "Movebank Data Repository",
@@ -30095,11 +30095,12 @@
   "r3d100013832": {
     "description": "ROHub is a holistic solution for the storage, lifecycle management and preservation of scientific investigations, campaigns and operational processes via research objects. It makes these resources available to others, allows to publish and release them through a DOI, and allows to discover and reuse pre-existing scientific knowledge. Built entirely around the research object concept and inspired by sustainable software management principles, ROHub is the reference platform implementing natively the full research object model and paradigm, which provides the backbone to a wealth of RO-centric applications and interfaces across different scientific communities.",
     "doi": "10.17616/R31NJN60",
-    "homepage": "https://reliance.rohub.org/",
+    "homepage": "https://www.rohub.org/",
     "license": "CC0",
     "name": "ROHub",
     "prefix": "r3d100013832",
     "synonyms": [
+      "RO-Crate Management Platform",
       "Research Object Hub Platform"
     ]
   },
@@ -35512,6 +35513,17 @@
     "name": "OpenData@USM",
     "prefix": "r3d100014719"
   },
+  "r3d100014720": {
+    "description": "The CLARIAH-IATEXT repository is a specialized research data repository for Spanish linguistic resources, language technologies, and Digital Humanities applications, hosted at the Instituto Universitario de Análisis y Aplicaciones Textuales (IATEXT) of the Universidad de Las Palmas de Gran Canaria. The repository provides sustainable long-term access to diverse linguistic resources including Spanish textual corpora (over 12 million example sentences), linguistically annotated corpora, lexical databases (over 80,000 semantic-lexical relations), dictionaries (Latin collocations, Portuguese loanwords, Americanisms), natural language processing tools, and Digital Humanities applications. IATEXT has developed more than 30 Digital Humanities applications and linguistic tools including morphological analyzers, POS taggers, conjugators (14,000+ Spanish verbs), stylometric analysis tools, phrase and collocation finders, neologism detectors, and specialized search engines for parliamentary discourse, literary texts, and archaeological heritage. The repository also hosts historical and cultural databases such as ArqueoGriegos (20,000+ texts, 10,000+ images of Greek archaeological sites), ModeCan (Canarian Modernist literature), and OPORT (Portuguese loanwords in Spanish from the 16th century to present). As part of CLARIAH-ES (the Spanish node coordinating Spain's participation in the European Research Infrastructure Consortia CLARIN and DARIAH), the repository implements FAIR principles, uses CLARIN standards (CMDI metadata, Handle persistent identifiers, OAI-PMH harvesting), and provides both open and restricted access depending on licensing agreements. The designated community includes researchers, educators, students, and developers in Hispanic linguistics, computational linguistics, textual analysis, classical studies, Digital Humanities, and natural language processing for Spanish.",
+    "doi": "10.17616/R31NJNUO",
+    "homepage": "https://clariah.iatext.ulpgc.es/",
+    "name": "CLARIAH-IATEXT",
+    "prefix": "r3d100014720",
+    "synonyms": [
+      "CLARIAH-ES-IATEXT",
+      "IATEXT-CLARIAH-ES"
+    ]
+  },
   "r3d100014722": {
     "description": "O2A REGISTRY effectively manages metadata for your data generating items, such as sensors, devices, gear, samplers or models in order to fulfill the first step of a FAIR data management.",
     "doi": "10.17616/R31NJNUQ",
@@ -35600,6 +35612,7 @@
   },
   "r3d100014740": {
     "description": "The International Soil Moisture Network (ISMN) provides free access to long-term, harmonised and quality-controlled in situ soil moisture observations, covering the near-surface zone down to the deep-root zone. These observations are collected from around 3.000 sites belonging to various organisations that supply ISMN with data on a voluntary basis. Other relevant hydrometeorological variables such as rainfall and temperature are also stored in the database. Services provided by ISMN have made a major contribution towards calibrating/validating and improving global satellite soil moisture products and land surface models.",
+    "doi": "10.17616/R31NJNV8",
     "homepage": "https://ismn.earth",
     "name": "International Soil Moisture Network",
     "prefix": "r3d100014740",
@@ -35609,12 +35622,14 @@
   },
   "r3d100014741": {
     "description": "GRANTS Data is a data repository operated by the Japan Science and Technology Agency (JST). GRANTS Data is a platform that securely stores and publishes data for researchers who wish to share the findings of their publicly funded research with the public. The purpose of this service is to promote the publication and utilization of research data, and ultimately to contribute to the promotion and advancement of science and technology.\n\nData Published through GRANTS Data will automatically be assigned a DOI and will be distributed worldwide as open access* data, which means that the data can be cited, shared, reused, and otherwise used under the conditions set by the copyright holder.\n\n*Open access: Anyone can access it for free, and the scope of permitted secondary use is clearly stated.\n\nNote: Please be aware that some of the data included in GRANTS Data is not linked to any research paper, meaning that it has not been academically evaluated or verified by researchers.",
+    "doi": "10.17616/R31NJNV9",
     "homepage": "https://grantsdata.jst.go.jp/",
     "name": "GRANTS Data",
     "prefix": "r3d100014741"
   },
   "r3d100014742": {
     "description": "Telkom University Dataverse is the institutional research data repository of Universitas Telkom (Telkom University), Indonesia. It provides Telkom University researchers, lecturers, students, and partners with a trusted platform to deposit, preserve, and share research data, software, and other reproducible research outputs across all disciplines. The repository assigns DataCite DOIs to datasets, supports standard data citation and Make Data Count metrics (views, downloads, citations), and follows FAIR data principles to promote open science, long-term stewardship, and global visibility and re-use of Telkom University research data. The service is operated by the Directorate of Information Technology Center (PuTI) of Telkom University.",
+    "doi": "10.17616/R31NJNVA",
     "homepage": "https://dataverse.telkomuniversity.ac.id/",
     "license": "CC",
     "name": "Dataverse Telkom University",
@@ -35622,5 +35637,55 @@
     "synonyms": [
       "Dataverse Universitas Telkom"
     ]
+  },
+  "r3d100014743": {
+    "description": "The Thünen Atlas is an interactive, web-based geoportal that provides comprehensive spatial data and maps on rural development, agriculture, forestry, and marine ecosystems in Germany. It serves as a central access point for the thematic atlases and geodata produced by the Johann Heinrich von Thünen Institute, the Federal Research Institute for Rural Areas, Forestry and Fisheries.",
+    "doi": "10.17616/R31NJNVB",
+    "homepage": "https://atlas.thuenen.de/#/",
+    "name": "Thünen Atlas",
+    "prefix": "r3d100014743"
+  },
+  "r3d100014744": {
+    "description": "The Plant Biotechnology Information Primary Database (PlaBiPD) is a specialized genomic and proteomic resource focused on key crop and model plants. Its current implementation centers on providing integrated sequence and protein data for eight major crop species—sugar beet, grapevine, rapeseed (canola), potato, maize, barley, bread wheat, and false flax—alongside the foundational model plant Arabidopsis thaliana.  PlaBiPD serves as a centralized platform for plant biotechnology research, offering foundational molecular data that supports gene discovery, functional annotation, and cross-species comparative studies aimed at crop improvement.",
+    "doi": "10.17616/R31NJNVC",
+    "homepage": "https://www.plabipd.de/",
+    "name": "Plant Biotechnology Information Primary Database",
+    "prefix": "r3d100014744",
+    "synonyms": [
+      "IBG-4"
+    ]
+  },
+  "r3d100014746": {
+    "description": "The open data repository DataverseUA of the National Academy of Sciences of Ukraine is a digital platform for storing, classifying and publishing the Academy's scientific data. The aim of the project is to establish an open data repository service for research conducted by scientific institutions affiliated with the National Academy of Sciences of Ukraine. The repository is intended to provide researchers, innovators, technology companies, and the general public with an accessible and reliable environment where they can publish, discover, and reuse data.",
+    "doi": "10.17616/R31NJNVE",
+    "homepage": "https://opendata.nas.gov.ua/",
+    "license": "CC",
+    "name": "Open Data Repository of the National Academy of Sciences of Ukraine",
+    "prefix": "r3d100014746",
+    "synonyms": [
+      "DataverseUA"
+    ]
+  },
+  "r3d100014747": {
+    "description": "The Repository collects scientific achievements of employees and doctoral students of the John Paul II Catholic University of Lublin. The purpose of the repository is dissemination of the scientific achievements of the John Paul II Catholic University of Lublin and promoting conducted scientific research. Depositing data is possible for users affiliated with the John Paul II Catholic University of Lublin.",
+    "doi": "10.17616/R31NJNVF",
+    "homepage": "https://repozytorium.kul.pl",
+    "license": "CC",
+    "name": "Repository of the John Paul II Catholic University of Lublin",
+    "prefix": "r3d100014747",
+    "synonyms": [
+      "ReKUL",
+      "Repozytorium Instytucjonalne KUL"
+    ]
+  },
+  "r3d100014749": {
+    "description": "With the animal diseases information system (TSIS), the Friedrich-Loeffler-Institute makes up-to-date information on notifiable animal diseases online available to the public. The system allows for an interactive search on animal disease outbreaks in Germany. In addition to the animal health situation on district level, TSIS provides information on all infectious animal diseases in Germany and the respective control measures.",
+    "doi": "10.17616/R31NJNVH",
+    "homepage": "https://tsis.fli.de/cadenza/",
+    "name": "TierSeuchenInformationsSystem",
+    "prefix": "r3d100014749",
+    "synonyms": [
+      "TSIS"
+    ]
   }
 }

bioregistry/version.py

@@ -11,7 +11,7 @@ __all__ = [
     "get_version",
 ]
 
-VERSION = "0.13.13"
+VERSION = "0.13.15"
 
 
 def get_git_hash() -> str | None:

{bioregistry-0.13.13.dist-info → bioregistry-0.13.15.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioregistry
-Version: 0.13.13
+Version: 0.13.15
 Summary: Integrated registry of biological databases and nomenclatures
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
 Author: Charles Tapley Hoyt