bioregistry 0.13.13__py3-none-any.whl → 0.13.15__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bioregistry/data/bioregistry.json +68 -65
- bioregistry/data/collections.json +26 -5
- bioregistry/external/aberowl/processed.json +81 -67
- bioregistry/external/bartoc/processed.json +90 -47
- bioregistry/external/bioportal/agroportal.json +22 -16
- bioregistry/external/bioportal/ecoportal.json +2 -1
- bioregistry/external/fairsharing/processed.json +17 -20
- bioregistry/external/lov/processed.json +12 -0
- bioregistry/external/ols/processed.json +29 -29
- bioregistry/external/re3data/processed.json +68 -3
- bioregistry/version.py +1 -1
- {bioregistry-0.13.13.dist-info → bioregistry-0.13.15.dist-info}/METADATA +1 -1
- {bioregistry-0.13.13.dist-info → bioregistry-0.13.15.dist-info}/RECORD +15 -15
- {bioregistry-0.13.13.dist-info → bioregistry-0.13.15.dist-info}/WHEEL +1 -1
- {bioregistry-0.13.13.dist-info → bioregistry-0.13.15.dist-info}/entry_points.txt +0 -0
|
@@ -157,10 +157,11 @@
|
|
|
157
157
|
},
|
|
158
158
|
"AFO": {
|
|
159
159
|
"description": "<p><strong>Allotrope Merged Ontology Suite</strong></p> <p>The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.</p> <p>license: http://purl.allotrope.org/voc/creative-commons-attribution-license<br/> rights: http://purl.allotrope.org/voc/copyright<br/></p>",
|
|
160
|
-
"download_owl": "http://aber-owl.net/media/ontologies/AFO/
|
|
160
|
+
"download_owl": "http://aber-owl.net/media/ontologies/AFO/43/afo.owl",
|
|
161
|
+
"homepage": "http://purl.allotrope.org",
|
|
161
162
|
"name": "Allotrope Merged Ontology Suite",
|
|
162
163
|
"prefix": "AFO",
|
|
163
|
-
"version": "REC/2025/
|
|
164
|
+
"version": "REC/2025/12"
|
|
164
165
|
},
|
|
165
166
|
"AFPO": {
|
|
166
167
|
"description": "AfPO is a tool which enables to annotate the African individuals, and brings together knowledge accumulated about existing populations with their genetic fingerprint in a standardized format.",
|
|
@@ -229,10 +230,10 @@
|
|
|
229
230
|
},
|
|
230
231
|
"AIDENTIFYAGE": {
|
|
231
232
|
"description": "The AIdentifyAGE ontology provides a comprehensive vocabulary description for forensic age assessment using dental biological markers, promoting the transparent assessment processes in forensic odontology and age diagnostics. It formalizes expert knowledge according to IOFOS, AGFAD, ABFO, ADA and ISO standards, ensuring semantic interoperability and ethical AI integration. This ontology is a work in progress developed under the AIdentifyAGE project (FCT Grant 2024.07444.IACDC), within the national investment RE-C05-i08 – More Digital Science, measure RE-C05-i08.M04 – Support to R&D projects for advanced cybersecurity, artificial intelligence and data science systems in public administration. This work is being developed in collaboration with researchers from the University of Lisbon (Portugal), the University of Münster (Germany), and the University of Zagreb (Croatia), within the framework of the AIdentifyAGE international consortium., Base Ontology for use in AIdentifyAGE Project",
|
|
232
|
-
"download_owl": "http://aber-owl.net/media/ontologies/AIDENTIFYAGE/
|
|
233
|
+
"download_owl": "http://aber-owl.net/media/ontologies/AIDENTIFYAGE/4/aidentifyage.owl",
|
|
233
234
|
"name": "AIdentifyAGE",
|
|
234
235
|
"prefix": "AIDENTIFYAGE",
|
|
235
|
-
"version": "v1.0.
|
|
236
|
+
"version": "v1.0.2-beta"
|
|
236
237
|
},
|
|
237
238
|
"AIDSCLIN": {
|
|
238
239
|
"description": "This new ontology will cover the knowledge on AIDS and the relevant clinic activities, which imports the HIV ontology at the site https://bioportal.bioontology.org/ontologies/HIVO004 as its main or basic concept system. The new ontology is named AIDSClinic001.owl",
|
|
@@ -401,7 +402,7 @@
|
|
|
401
402
|
},
|
|
402
403
|
"APO": {
|
|
403
404
|
"description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi",
|
|
404
|
-
"download_owl": "http://aber-owl.net/media/ontologies/APO/
|
|
405
|
+
"download_owl": "http://aber-owl.net/media/ontologies/APO/65/apo.owl",
|
|
405
406
|
"homepage": "http://www.yeastgenome.org/",
|
|
406
407
|
"name": "Ascomycete phenotype ontology",
|
|
407
408
|
"prefix": "APO"
|
|
@@ -653,11 +654,11 @@
|
|
|
653
654
|
"version": "2022-12-23"
|
|
654
655
|
},
|
|
655
656
|
"BERVO": {
|
|
656
|
-
"description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None",
|
|
657
|
-
"download_owl": "http://aber-owl.net/media/ontologies/BERVO/
|
|
657
|
+
"description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None, \"An ontology of variables for earth system simulation, partially derived from the EcoSIM framework.\"",
|
|
658
|
+
"download_owl": "http://aber-owl.net/media/ontologies/BERVO/5/bervo.owl",
|
|
658
659
|
"name": "The Biological and Environmental Research Variable Ontology",
|
|
659
660
|
"prefix": "BERVO",
|
|
660
|
-
"version": "2025-
|
|
661
|
+
"version": "2025-12-22"
|
|
661
662
|
},
|
|
662
663
|
"BFLC": {
|
|
663
664
|
"description": "An experimental extension to BIBFRAME 2.0 primarily for use by the Library of Congress, but with additions also applicable for other users",
|
|
@@ -1522,18 +1523,18 @@
|
|
|
1522
1523
|
},
|
|
1523
1524
|
"CL": {
|
|
1524
1525
|
"description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.",
|
|
1525
|
-
"download_owl": "http://aber-owl.net/media/ontologies/CL/
|
|
1526
|
+
"download_owl": "http://aber-owl.net/media/ontologies/CL/118/cl.owl",
|
|
1526
1527
|
"homepage": "https://obophenotype.github.io/cell-ontology/",
|
|
1527
1528
|
"name": "Cell Ontology",
|
|
1528
1529
|
"prefix": "CL"
|
|
1529
1530
|
},
|
|
1530
1531
|
"CL-SIMPLE": {
|
|
1531
1532
|
"description": "Cell Ontology treated as a simple existential graph of the terms defined in an ontology, An ontology of cell types.",
|
|
1532
|
-
"download_owl": "http://aber-owl.net/media/ontologies/CL-SIMPLE/
|
|
1533
|
+
"download_owl": "http://aber-owl.net/media/ontologies/CL-SIMPLE/25/cl-simple.owl",
|
|
1533
1534
|
"homepage": "https://cell-ontology.github.io/",
|
|
1534
1535
|
"name": "Cell Ontology Simple",
|
|
1535
1536
|
"prefix": "CL-SIMPLE",
|
|
1536
|
-
"version": "2025-
|
|
1537
|
+
"version": "2025-12-17"
|
|
1537
1538
|
},
|
|
1538
1539
|
"CLAO": {
|
|
1539
1540
|
"description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).",
|
|
@@ -1578,7 +1579,7 @@
|
|
|
1578
1579
|
},
|
|
1579
1580
|
"CMO": {
|
|
1580
1581
|
"description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
|
|
1581
|
-
"download_owl": "http://aber-owl.net/media/ontologies/CMO/
|
|
1582
|
+
"download_owl": "http://aber-owl.net/media/ontologies/CMO/167/cmo.owl",
|
|
1582
1583
|
"homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
|
|
1583
1584
|
"name": "Clinical measurement ontology",
|
|
1584
1585
|
"prefix": "CMO"
|
|
@@ -1633,7 +1634,7 @@
|
|
|
1633
1634
|
},
|
|
1634
1635
|
"COB": {
|
|
1635
1636
|
"description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.",
|
|
1636
|
-
"download_owl": "http://aber-owl.net/media/ontologies/COB/
|
|
1637
|
+
"download_owl": "http://aber-owl.net/media/ontologies/COB/16/cob.owl",
|
|
1637
1638
|
"homepage": "https://obofoundry.org/COB/",
|
|
1638
1639
|
"name": "Core Ontology for Biology and Biomedicine",
|
|
1639
1640
|
"prefix": "COB"
|
|
@@ -1655,11 +1656,11 @@
|
|
|
1655
1656
|
"version": "0.3.1"
|
|
1656
1657
|
},
|
|
1657
1658
|
"COGITO": {
|
|
1658
|
-
"description": "CogiTO
|
|
1659
|
-
"download_owl": "http://aber-owl.net/media/ontologies/COGITO/
|
|
1659
|
+
"description": "CogiTO forms a semantic bridge between tasks from Cognitive Atlas and Hierarchical Event Descriptor (HED) in the form of equivalent class axioms. In other words, terms for cognitive tasks are defined by their relation to HED tags. The purpose of this ontology is to enable querying partially annotated datasets either by a Cognitive Task or by HED tags.",
|
|
1660
|
+
"download_owl": "http://aber-owl.net/media/ontologies/COGITO/3/cogito.owl",
|
|
1660
1661
|
"name": "Cognitive Task Ontology",
|
|
1661
1662
|
"prefix": "COGITO",
|
|
1662
|
-
"version": "1.0
|
|
1663
|
+
"version": "1.1.0"
|
|
1663
1664
|
},
|
|
1664
1665
|
"COGPO": {
|
|
1665
1666
|
"description": "This ontology is used to describe the experimental conditions within cognitive/behavioral experiments, primarily in humans.",
|
|
@@ -1718,7 +1719,7 @@
|
|
|
1718
1719
|
},
|
|
1719
1720
|
"COMO": {
|
|
1720
1721
|
"description": "Ontological terms to describe experimental data, probably useful for other environmental microbiology projects. Used in several CORAL (Contextual Ontology-based Repository Analysis Library) deployments. See more about this platfom at https://github.com/jmchandonia/CORAL",
|
|
1721
|
-
"download_obo": "http://aber-owl.net/media/ontologies/COMO/
|
|
1722
|
+
"download_obo": "http://aber-owl.net/media/ontologies/COMO/8/como.obo",
|
|
1722
1723
|
"name": "Context and Measurement Ontology",
|
|
1723
1724
|
"prefix": "COMO",
|
|
1724
1725
|
"version": "2025-08-13"
|
|
@@ -2391,7 +2392,7 @@
|
|
|
2391
2392
|
},
|
|
2392
2393
|
"DRON": {
|
|
2393
2394
|
"description": "An ontology to support comparative effectiveness researchers studying claims data.",
|
|
2394
|
-
"download_owl": "http://aber-owl.net/media/ontologies/DRON/
|
|
2395
|
+
"download_owl": "http://aber-owl.net/media/ontologies/DRON/34/dron.owl",
|
|
2395
2396
|
"homepage": "https://github.com/ufbmi/dron",
|
|
2396
2397
|
"name": "The Drug Ontology",
|
|
2397
2398
|
"prefix": "DRON"
|
|
@@ -2626,7 +2627,7 @@
|
|
|
2626
2627
|
},
|
|
2627
2628
|
"EDONTOLOGY": {
|
|
2628
2629
|
"description": "This research work contributes in the field of Information logistics and ontology development in healthcare. An ontology based model that can fix information flow problems in the ward-round process of hospital unit. The ontology based model can be used to provide relevant information to the domain users according to their needs and demands. The ontology based model projects domain users profiling and describes their roles, information demands with competencies: skills, qualifications and experiences. The ontology based model will be implemented in OWL language that can be used in an application to support ward-round activities for achieving effective patient’s treatment process. For ontology development is concerned, different ontology development methodologies have been reviewed from literature review by the author to analyze the existing problems in the ward-round. This thesis incorporates Hybrid Methodology (HM) that helps to develop ontology based model that addresses information flow problems in ward-round. The proposed ontology based model is developed in web Ontology Language (OWL) supported tool protégé 4.0.2 that can be considered as foundation to develop a software product with the help of IT practitioners and developers to fulfill medical practitioner’s demands in ward-round’s context.",
|
|
2629
|
-
"download_owl": "http://aber-owl.net/media/ontologies/EDONTOLOGY/
|
|
2630
|
+
"download_owl": "http://aber-owl.net/media/ontologies/EDONTOLOGY/2/edontology.owl",
|
|
2630
2631
|
"name": "EmergencyDerpartmentOntology",
|
|
2631
2632
|
"prefix": "EDONTOLOGY"
|
|
2632
2633
|
},
|
|
@@ -2967,12 +2968,11 @@
|
|
|
2967
2968
|
"version": "2"
|
|
2968
2969
|
},
|
|
2969
2970
|
"EXMO": {
|
|
2970
|
-
"description": "A core reference ontology built upon BFO about exercise medicine
|
|
2971
|
-
"download_owl": "http://aber-owl.net/media/ontologies/EXMO/
|
|
2971
|
+
"description": "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
|
|
2972
|
+
"download_owl": "http://aber-owl.net/media/ontologies/EXMO/7/exmo.owl",
|
|
2972
2973
|
"homepage": "https://github.com/Exercise-Medicine-Ontology/EXMO",
|
|
2973
2974
|
"name": "Exercise Medicine Ontology",
|
|
2974
|
-
"prefix": "EXMO"
|
|
2975
|
-
"version": "2025-06-05"
|
|
2975
|
+
"prefix": "EXMO"
|
|
2976
2976
|
},
|
|
2977
2977
|
"EXO": {
|
|
2978
2978
|
"description": "Vocabularies for describing exposure data to inform understanding of environmental health.",
|
|
@@ -3978,6 +3978,12 @@
|
|
|
3978
3978
|
"name": "HierarchicalDMProcessOnto",
|
|
3979
3979
|
"prefix": "HDMPONTO"
|
|
3980
3980
|
},
|
|
3981
|
+
"HDS": {
|
|
3982
|
+
"description": "The humanitarian data space vocabulary describes entities and relationships relevant for humanitarian applications, specifically focusing on events related to sexual violence, human trafficking and refugee protection. The aim of this vocabulary is to report on situations and incidents that are taking place on the ground into the humanitarian data space.",
|
|
3983
|
+
"download_owl": "http://aber-owl.net/media/ontologies/HDS/1/hds.owl",
|
|
3984
|
+
"name": "Humanitarian Data Space",
|
|
3985
|
+
"prefix": "HDS"
|
|
3986
|
+
},
|
|
3981
3987
|
"HECON": {
|
|
3982
3988
|
"description": "Health Condition Evolution Ontology (HECON), is a formal model representation of the evolution of medical events over time.",
|
|
3983
3989
|
"download_owl": "http://aber-owl.net/media/ontologies/HECON/1/hecon.owl",
|
|
@@ -4034,7 +4040,7 @@
|
|
|
4034
4040
|
},
|
|
4035
4041
|
"HGNC": {
|
|
4036
4042
|
"description": "Human Genome Organisation (HUGO) Gene Nomenclature Committee at the European Bioinformatics Institute approves a gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database.",
|
|
4037
|
-
"download_owl": "http://aber-owl.net/media/ontologies/HGNC/
|
|
4043
|
+
"download_owl": "http://aber-owl.net/media/ontologies/HGNC/7/hgnc.owl",
|
|
4038
4044
|
"homepage": "http://www.genenames.org/",
|
|
4039
4045
|
"name": "HUGO Gene Nomenclature",
|
|
4040
4046
|
"prefix": "HGNC",
|
|
@@ -4226,11 +4232,18 @@
|
|
|
4226
4232
|
},
|
|
4227
4233
|
"HOOM": {
|
|
4228
4234
|
"description": "Orphanet provides phenotypic annotations of the rare diseases in the Orphanet nomenclature using the Human Phenotype Ontology (HPO). HOOM is a module that qualifies the annotation between a clinical entity and phenotypic abnormalities according to a frequency and by integrating the notion of diagnostic criterion. In ORDO a clinical entity is either a group of rare disorders, a rare disorder or a subtype of disorder. The phenomes branch of ORDO has been refactored as a logical import of HPO, and the HPO-ORDO phenotype disease-annotations have been provided in a series of triples in OBAN format in which associations, frequency and provenance are modeled. HOOM is provided as an OWL (Ontologies Web Languages) file, using OBAN, the Orphanet Rare Disease Ontology (ORDO), and HPO ontological models. HOOM provides extra possibilities for researchers, pharmaceutical companies and others wishing to co-analyse rare and common disease phenotype associations, or re-use the integrated ontologies in genomic variants repositories or match-making tools.",
|
|
4229
|
-
"download_owl": "http://aber-owl.net/media/ontologies/HOOM/
|
|
4235
|
+
"download_owl": "http://aber-owl.net/media/ontologies/HOOM/13/hoom.owl",
|
|
4230
4236
|
"homepage": "https://www.orphadata.com",
|
|
4231
4237
|
"name": "HPO - ORDO Ontological Module",
|
|
4232
4238
|
"prefix": "HOOM",
|
|
4233
|
-
"version": "2.
|
|
4239
|
+
"version": "2.5"
|
|
4240
|
+
},
|
|
4241
|
+
"HOOM_V3": {
|
|
4242
|
+
"description": "Orphanet provides phenotypic annotations of the rare diseases in the Orphanet nomenclature using the Human Phenotype Ontology (HPO). HOOM is a module that qualifies the annotation between a clinical entity and phenotypic abnormalities according to a frequency and by integrating the notion of diagnostic criterion. This new model of HOOM, used between ORDO and HPO is no more based on OBAN modelisation. It provides ORDO diseases concept annotated with HPO terms in a lightweight new dataset.",
|
|
4243
|
+
"download_owl": "http://aber-owl.net/media/ontologies/HOOM_V3/1/hoom_v3.owl",
|
|
4244
|
+
"name": "HOOM_New_Model",
|
|
4245
|
+
"prefix": "HOOM_V3",
|
|
4246
|
+
"version": "3.0"
|
|
4234
4247
|
},
|
|
4235
4248
|
"HORD": {
|
|
4236
4249
|
"description": "This ontology describes the bio-psico-social state of a person of rare diseses in a holistic way. It considers several contents such as disease, psychological, social, environmental state of the person.",
|
|
@@ -4274,7 +4287,7 @@
|
|
|
4274
4287
|
},
|
|
4275
4288
|
"HRA": {
|
|
4276
4289
|
"description": "The Human Reference Atlas (HRA) is a comprehensive, high-resolution, three-dimensional atlas of all the cells in the healthy human body. The Human Reference Atlas provides standard terminologies and data structures for describing specimens, biological structures, and spatial positions linked to existing ontologies., The graph representation of the Human Reference Atlas (HRA) dataset.",
|
|
4277
|
-
"download_owl": "http://aber-owl.net/media/ontologies/HRA/
|
|
4290
|
+
"download_owl": "http://aber-owl.net/media/ontologies/HRA/11/hra.owl",
|
|
4278
4291
|
"name": "Human Reference Atlas",
|
|
4279
4292
|
"prefix": "HRA",
|
|
4280
4293
|
"version": "v2.3"
|
|
@@ -5319,11 +5332,12 @@
|
|
|
5319
5332
|
"prefix": "LEPAO"
|
|
5320
5333
|
},
|
|
5321
5334
|
"LHO": {
|
|
5322
|
-
"description": "The
|
|
5323
|
-
"download_owl": "http://aber-owl.net/media/ontologies/LHO/
|
|
5335
|
+
"description": "The Livestock Health Ontology (LHO) extends the DECIDE ontology specifically designed for salmon usecase. LHO contains information on the health and well-being of livestock animal species such as cattle, pigs, and poultry. Furthermore, it represents the explicit structured and standardized framework for specific domain knowledge and data integration of livestock species. During the development process, knowledge can be retrieved from domain experts, and after the retrieving process, the prototype is designed for reasoning and planning of data related to cattle, pigs, and poultry. Moreover, LHO contains information regarding farms Identifications, their samples, geolocation, breed, diagnostic tests, Pathogen identifications, and Pathogen results for specific bacteria such as Histophilus Somni (HS), Mannheimia Haemolytica (MH), Pasteurella Multocida (PM), Bovine Coronavirus (BCV) bacterial mycoplasma and aerobic culture results for the respiratory diseases in cattle. This information is represented as concepts of classes, subclasses, and their relationship in the form of object and data properties. For pigs, it includes FarmType, age, weight, and pathogens like PRRS, SwineInfluenza, and M_Hyponemoniea. In poultry, LHO incorporates FarmType, with specific pathogen names such as Infectious Bronchitis (IB), providing a concise overview of health aspects across livestock species. ), Salmon case study demonstrates the semantic modeling and integration of aquaculture-specific attributes such as hasMortality, hasActualBiomass, hasWaterType, and hasLocalAuthority. The data supports epidemiological analysis of fish health by mapping samples and measurements to environmental and production factors.",
|
|
5336
|
+
"download_owl": "http://aber-owl.net/media/ontologies/LHO/9/lho.owl",
|
|
5337
|
+
"homepage": "https://bioportal.bioontology.org/ontologies/LHO",
|
|
5324
5338
|
"name": "LivestockHealthOntology",
|
|
5325
5339
|
"prefix": "LHO",
|
|
5326
|
-
"version": "
|
|
5340
|
+
"version": "V1.4"
|
|
5327
5341
|
},
|
|
5328
5342
|
"LICO": {
|
|
5329
5343
|
"description": "Liver Case Ontology (LiCO) is a case-centric ontology for liver patient cases called lico (Liver Case Ontology) that integrates several ontologies and lexicons developed for sub-disciplines of medicine such as RadLex (Radiology Lexicon), SNOMED CT (Systematized Nomenclature of Medicine, Clinical Terms), LOINC (The Logical Observation Identifier Names and Codes). It is an extension of ONLIRA (Ontology of the Liver for Radiology) that represents the liver and lesions from a radiological perspective.",
|
|
@@ -5829,11 +5843,11 @@
|
|
|
5829
5843
|
},
|
|
5830
5844
|
"METPO": {
|
|
5831
5845
|
"description": "An ontology of ecophysiological traits of microbes, including tolerated and preferred growth conditions, Microbial ecophysiological trait and phenotype ontology",
|
|
5832
|
-
"download_owl": "http://aber-owl.net/media/ontologies/METPO/
|
|
5846
|
+
"download_owl": "http://aber-owl.net/media/ontologies/METPO/18/metpo.owl",
|
|
5833
5847
|
"homepage": "https://github.com/berkeleybop/metpo",
|
|
5834
5848
|
"name": "METPO",
|
|
5835
5849
|
"prefix": "METPO",
|
|
5836
|
-
"version": "2025-
|
|
5850
|
+
"version": "2025-12-12"
|
|
5837
5851
|
},
|
|
5838
5852
|
"MF": {
|
|
5839
5853
|
"description": "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.",
|
|
@@ -6040,7 +6054,7 @@
|
|
|
6040
6054
|
},
|
|
6041
6055
|
"MMO": {
|
|
6042
6056
|
"description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
|
|
6043
|
-
"download_owl": "http://aber-owl.net/media/ontologies/MMO/
|
|
6057
|
+
"download_owl": "http://aber-owl.net/media/ontologies/MMO/119/mmo.owl",
|
|
6044
6058
|
"homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
|
|
6045
6059
|
"name": "Measurement method ontology",
|
|
6046
6060
|
"prefix": "MMO"
|
|
@@ -6163,7 +6177,7 @@
|
|
|
6163
6177
|
},
|
|
6164
6178
|
"MP": {
|
|
6165
6179
|
"description": "Standard terms for annotating mammalian phenotypic data.",
|
|
6166
|
-
"download_owl": "http://aber-owl.net/media/ontologies/MP/
|
|
6180
|
+
"download_owl": "http://aber-owl.net/media/ontologies/MP/135/mp.owl",
|
|
6167
6181
|
"homepage": "https://www.informatics.jax.org/vocab/mp_ontology/",
|
|
6168
6182
|
"name": "Mammalian Phenotype Ontology",
|
|
6169
6183
|
"prefix": "MP"
|
|
@@ -6198,7 +6212,7 @@
|
|
|
6198
6212
|
},
|
|
6199
6213
|
"MS": {
|
|
6200
6214
|
"description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
|
|
6201
|
-
"download_owl": "http://aber-owl.net/media/ontologies/MS/
|
|
6215
|
+
"download_owl": "http://aber-owl.net/media/ontologies/MS/228/ms.owl",
|
|
6202
6216
|
"homepage": "http://www.psidev.info/groups/controlled-vocabularies",
|
|
6203
6217
|
"name": "Mass spectrometry ontology",
|
|
6204
6218
|
"prefix": "MS"
|
|
@@ -7252,11 +7266,11 @@
|
|
|
7252
7266
|
"version": "Vision Release: 1.0.20"
|
|
7253
7267
|
},
|
|
7254
7268
|
"OLAS": {
|
|
7255
|
-
"description": "The Ontology of Laboratory Animal Science (OLAS) is established as a community-based biomedical ontology in the field of laboratory animal science, with the aim to ontologically represent entities and the relations among the entities related to laboratory animal science.",
|
|
7256
|
-
"download_owl": "http://aber-owl.net/media/ontologies/OLAS/
|
|
7269
|
+
"description": "The Ontology of Laboratory Animal Science (OLAS) is established as a community-based biomedical ontology in the field of laboratory animal science, with the aim to ontologically represent entities and the relations among the entities related to laboratory animal science., OLAS is a biomedical ontology in the area of laboratory animal science.",
|
|
7270
|
+
"download_owl": "http://aber-owl.net/media/ontologies/OLAS/3/olas.owl",
|
|
7257
7271
|
"name": "Ontology of Laboratory Animal Science",
|
|
7258
7272
|
"prefix": "OLAS",
|
|
7259
|
-
"version": "2025-
|
|
7273
|
+
"version": "2025-12-22"
|
|
7260
7274
|
},
|
|
7261
7275
|
"OLATDV": {
|
|
7262
7276
|
"description": "Life cycle stages for Medaka",
|
|
@@ -7721,45 +7735,45 @@
|
|
|
7721
7735
|
},
|
|
7722
7736
|
"ORDO_CS": {
|
|
7723
7737
|
"description": "This ontology is the czech version of ORDO with definition, labels and synonyms in czech.",
|
|
7724
|
-
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_CS/
|
|
7738
|
+
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_CS/9/ordo_cs.owl",
|
|
7725
7739
|
"name": "ORDO Czech",
|
|
7726
7740
|
"prefix": "ORDO_CS",
|
|
7727
|
-
"version": "4.
|
|
7741
|
+
"version": "4.8"
|
|
7728
7742
|
},
|
|
7729
7743
|
"ORDO_DE": {
|
|
7730
7744
|
"description": "This ontology is the german version of ORDO with definition, labels and synonyms in german.",
|
|
7731
|
-
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_DE/
|
|
7745
|
+
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_DE/19/ordo_de.owl",
|
|
7732
7746
|
"name": "ORDO GERMAN",
|
|
7733
7747
|
"prefix": "ORDO_DE",
|
|
7734
|
-
"version": "4.
|
|
7748
|
+
"version": "4.8"
|
|
7735
7749
|
},
|
|
7736
7750
|
"ORDO_ES": {
|
|
7737
7751
|
"description": "This ontology is the spanish version of ORDO with definition, labels and synonyms in spanish.",
|
|
7738
|
-
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_ES/
|
|
7752
|
+
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_ES/17/ordo_es.owl",
|
|
7739
7753
|
"name": "ORDO SPANISH",
|
|
7740
7754
|
"prefix": "ORDO_ES",
|
|
7741
|
-
"version": "4.
|
|
7755
|
+
"version": "4.8"
|
|
7742
7756
|
},
|
|
7743
7757
|
"ORDO_FR": {
|
|
7744
7758
|
"description": "This ontology is the french version of ORDO with definition, labels and synonyms in french. Cette ontologie est la version française d'ORDO avec les définitions, labels et synonymes en français.",
|
|
7745
|
-
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_FR/
|
|
7759
|
+
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_FR/19/ordo_fr.owl",
|
|
7746
7760
|
"name": "ORDO FRENCH",
|
|
7747
7761
|
"prefix": "ORDO_FR",
|
|
7748
|
-
"version": "4.
|
|
7762
|
+
"version": "4.8"
|
|
7749
7763
|
},
|
|
7750
7764
|
"ORDO_IT": {
|
|
7751
7765
|
"description": "This ontology is the italian version of ORDO with definition, labels and synonyms in italian.",
|
|
7752
|
-
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_IT/
|
|
7766
|
+
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_IT/14/ordo_it.owl",
|
|
7753
7767
|
"name": "ORDO ITALIAN",
|
|
7754
7768
|
"prefix": "ORDO_IT",
|
|
7755
|
-
"version": "4.
|
|
7769
|
+
"version": "4.8"
|
|
7756
7770
|
},
|
|
7757
7771
|
"ORDO_NL": {
|
|
7758
7772
|
"description": "This ontology is the dutch version of ORDO with definition, labels and synonyms in dutch.",
|
|
7759
|
-
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_NL/
|
|
7773
|
+
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_NL/20/ordo_nl.owl",
|
|
7760
7774
|
"name": "ORDO DUTCH",
|
|
7761
7775
|
"prefix": "ORDO_NL",
|
|
7762
|
-
"version": "4.
|
|
7776
|
+
"version": "4.8"
|
|
7763
7777
|
},
|
|
7764
7778
|
"ORDO_OBO": {
|
|
7765
7779
|
"description": "This is the OBO version of the Orphanet Rare Disease ontology (ORDO) which is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It derived from the Orphanet database (www.orpha.net ) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, SNOMED CT, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10).",
|
|
@@ -7771,17 +7785,17 @@
|
|
|
7771
7785
|
},
|
|
7772
7786
|
"ORDO_PL": {
|
|
7773
7787
|
"description": "This ontology is the polish version of ORDO with definition, labels and synonyms in polish.",
|
|
7774
|
-
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_PL/
|
|
7788
|
+
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_PL/14/ordo_pl.owl",
|
|
7775
7789
|
"name": "ORDO POLISH",
|
|
7776
7790
|
"prefix": "ORDO_PL",
|
|
7777
|
-
"version": "4.
|
|
7791
|
+
"version": "4.8"
|
|
7778
7792
|
},
|
|
7779
7793
|
"ORDO_PT": {
|
|
7780
7794
|
"description": "This ontology is the portuguese version of ORDO with definition, labels and synonyms in portuguese.",
|
|
7781
|
-
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_PT/
|
|
7795
|
+
"download_owl": "http://aber-owl.net/media/ontologies/ORDO_PT/10/ordo_pt.owl",
|
|
7782
7796
|
"name": "ORDO Portuguese",
|
|
7783
7797
|
"prefix": "ORDO_PT",
|
|
7784
|
-
"version": "4.
|
|
7798
|
+
"version": "4.8"
|
|
7785
7799
|
},
|
|
7786
7800
|
"OREX-SAM": {
|
|
7787
7801
|
"description": "Sample types from JSC-SAMIS Interface Control Document. Edited by S.M. Richard. These sample types are limited to those expected from the OSIRIS-REx sample return, this is not an exhaustive sample type categorization.",
|
|
@@ -8072,7 +8086,7 @@
|
|
|
8072
8086
|
},
|
|
8073
8087
|
"PECO": {
|
|
8074
8088
|
"description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.",
|
|
8075
|
-
"download_owl": "http://aber-owl.net/media/ontologies/PECO/
|
|
8089
|
+
"download_owl": "http://aber-owl.net/media/ontologies/PECO/32/peco.owl",
|
|
8076
8090
|
"homepage": "http://planteome.org/",
|
|
8077
8091
|
"name": "Plant Experimental Conditions Ontology",
|
|
8078
8092
|
"prefix": "PECO"
|
|
@@ -8129,7 +8143,7 @@
|
|
|
8129
8143
|
"description": "This ontology seeks to capture the provenance and data quality associated with PGHD shared with an EHR. The objective is to have an ontological formal representation of the provenance and contextual data related to PGHD shared with EHR, in order to offer clinicians a means to use PGHD data for decision making and treatment support., Patient Generated Health Data (PGHD) refer to health data collected by patient or their relatives. This ontology seeks to capture information about the data, the provenance and data quality associated with PGHD shared with an EHR.",
|
|
8130
8144
|
"download_owl": "http://aber-owl.net/media/ontologies/PGHDPROV/4/pghdprov.owl",
|
|
8131
8145
|
"homepage": "https://w3id.org/pghdprovo",
|
|
8132
|
-
"name": "Context and Provenance Based Standardized Patient Generated Health Data Shared with an Electronic Health Record",
|
|
8146
|
+
"name": "PGHDProvo: Context and Provenance Based Standardized Patient Generated Health Data Shared with an Electronic Health Record",
|
|
8133
8147
|
"prefix": "PGHDPROV",
|
|
8134
8148
|
"version": "1.0"
|
|
8135
8149
|
},
|
|
@@ -8254,12 +8268,12 @@
|
|
|
8254
8268
|
"prefix": "PLANP"
|
|
8255
8269
|
},
|
|
8256
8270
|
"PLANTSO": {
|
|
8257
|
-
"description": "This ontology describes biotic and abiotic stresses that a plant may encounter.",
|
|
8258
|
-
"download_owl": "http://aber-owl.net/media/ontologies/PLANTSO/
|
|
8271
|
+
"description": "This ontology describes biotic and abiotic stresses that a plant may encounter., An ontology describing biotic and abiotic plant stresses.",
|
|
8272
|
+
"download_owl": "http://aber-owl.net/media/ontologies/PLANTSO/4/plantso.owl",
|
|
8259
8273
|
"homepage": "https://github.com/Planteome/plant-stress-ontology",
|
|
8260
8274
|
"name": "Plant Stress Ontology",
|
|
8261
8275
|
"prefix": "PLANTSO",
|
|
8262
|
-
"version": "
|
|
8276
|
+
"version": "2025-12-16"
|
|
8263
8277
|
},
|
|
8264
8278
|
"PLIO": {
|
|
8265
8279
|
"description": "The protein--ligand interaction ontology (PLIO) was developed around three main concepts, namely target, ligand and interaction, and was enriched by adding synonyms, useful annotations and references.",
|
|
@@ -8508,7 +8522,7 @@
|
|
|
8508
8522
|
},
|
|
8509
8523
|
"PSO": {
|
|
8510
8524
|
"description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.",
|
|
8511
|
-
"download_owl": "http://aber-owl.net/media/ontologies/PSO/
|
|
8525
|
+
"download_owl": "http://aber-owl.net/media/ontologies/PSO/6/pso.owl",
|
|
8512
8526
|
"homepage": "https://github.com/Planteome/plant-stress-ontology",
|
|
8513
8527
|
"name": "Plant Stress Ontology",
|
|
8514
8528
|
"prefix": "PSO"
|
|
@@ -8565,7 +8579,7 @@
|
|
|
8565
8579
|
},
|
|
8566
8580
|
"PW": {
|
|
8567
8581
|
"description": "A controlled vocabulary for annotating gene products to pathways.",
|
|
8568
|
-
"download_owl": "http://aber-owl.net/media/ontologies/PW/
|
|
8582
|
+
"download_owl": "http://aber-owl.net/media/ontologies/PW/98/pw.owl",
|
|
8569
8583
|
"homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
|
|
8570
8584
|
"name": "Pathway ontology",
|
|
8571
8585
|
"prefix": "PW"
|
|
@@ -8698,7 +8712,7 @@
|
|
|
8698
8712
|
},
|
|
8699
8713
|
"RBO": {
|
|
8700
8714
|
"description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
|
|
8701
|
-
"download_owl": "http://aber-owl.net/media/ontologies/RBO/
|
|
8715
|
+
"download_owl": "http://aber-owl.net/media/ontologies/RBO/39/rbo.owl",
|
|
8702
8716
|
"homepage": "https://github.com/Radiobiology-Informatics-Consortium/RBO",
|
|
8703
8717
|
"name": "Radiation Biology Ontology",
|
|
8704
8718
|
"prefix": "RBO"
|
|
@@ -8738,7 +8752,7 @@
|
|
|
8738
8752
|
},
|
|
8739
8753
|
"RDA-ISSUANCE": {
|
|
8740
8754
|
"description": "RDA vocabulary for mode of issuance of a resource (single unit, multipart monograph, etc.)",
|
|
8741
|
-
"download_owl": "http://aber-owl.net/media/ontologies/RDA-ISSUANCE/
|
|
8755
|
+
"download_owl": "http://aber-owl.net/media/ontologies/RDA-ISSUANCE/11/rda-issuance.owl",
|
|
8742
8756
|
"homepage": "https://www.rdaregistry.info/termList/ModeIssue/",
|
|
8743
8757
|
"name": "RDA Mode of Issuance",
|
|
8744
8758
|
"prefix": "RDA-ISSUANCE",
|
|
@@ -8948,7 +8962,7 @@
|
|
|
8948
8962
|
},
|
|
8949
8963
|
"RS": {
|
|
8950
8964
|
"description": "Ontology of rat strains",
|
|
8951
|
-
"download_owl": "http://aber-owl.net/media/ontologies/RS/
|
|
8965
|
+
"download_owl": "http://aber-owl.net/media/ontologies/RS/203/rs.owl",
|
|
8952
8966
|
"homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
|
|
8953
8967
|
"name": "Rat Strain Ontology",
|
|
8954
8968
|
"prefix": "RS"
|
|
@@ -9338,7 +9352,7 @@
|
|
|
9338
9352
|
},
|
|
9339
9353
|
"SLSO": {
|
|
9340
9354
|
"description": "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.",
|
|
9341
|
-
"download_owl": "http://aber-owl.net/media/ontologies/SLSO/
|
|
9355
|
+
"download_owl": "http://aber-owl.net/media/ontologies/SLSO/13/slso.owl",
|
|
9342
9356
|
"homepage": "https://github.com/nasa/LSDAO",
|
|
9343
9357
|
"name": "Space Life Sciences Ontology",
|
|
9344
9358
|
"prefix": "SLSO"
|
|
@@ -10313,10 +10327,10 @@
|
|
|
10313
10327
|
},
|
|
10314
10328
|
"VFB_DRIVERS": {
|
|
10315
10329
|
"description": "An ontology of Drosophila melanogaster drivers and expression patterns., An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.",
|
|
10316
|
-
"download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/
|
|
10330
|
+
"download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/197/vfb_drivers.owl",
|
|
10317
10331
|
"name": "vfb_drivers",
|
|
10318
10332
|
"prefix": "VFB_DRIVERS",
|
|
10319
|
-
"version": "2025-12-
|
|
10333
|
+
"version": "2025-12-22"
|
|
10320
10334
|
},
|
|
10321
10335
|
"VHO": {
|
|
10322
10336
|
"description": "Ontology of terms used for annotating data in Virtual Fly Brain, including anatomical templates.",
|