bec-widgets 0.53.2__py3-none-any.whl → 0.54.0__py3-none-any.whl

bec_widgets/widgets/figure/plots/image/image_item.py

@@ -0,0 +1,277 @@
+from __future__ import annotations
+
+from typing import TYPE_CHECKING, Literal, Optional
+
+import numpy as np
+import pyqtgraph as pg
+from pydantic import Field
+
+from bec_widgets.utils import BECConnector, ConnectionConfig
+from bec_widgets.widgets.figure.plots.image.image_processor import ProcessingConfig
+
+if TYPE_CHECKING:
+    from bec_widgets.widgets.figure.plots.image.image import BECImageShow
+
+
+class ImageItemConfig(ConnectionConfig):
+    parent_id: Optional[str] = Field(None, description="The parent plot of the image.")
+    monitor: Optional[str] = Field(None, description="The name of the monitor.")
+    source: Optional[str] = Field(None, description="The source of the curve.")
+    color_map: Optional[str] = Field("magma", description="The color map of the image.")
+    downsample: Optional[bool] = Field(True, description="Whether to downsample the image.")
+    opacity: Optional[float] = Field(1.0, description="The opacity of the image.")
+    vrange: Optional[tuple[int, int]] = Field(
+        None, description="The range of the color bar. If None, the range is automatically set."
+    )
+    color_bar: Optional[Literal["simple", "full"]] = Field(
+        "simple", description="The type of the color bar."
+    )
+    autorange: Optional[bool] = Field(True, description="Whether to autorange the color bar.")
+    processing: ProcessingConfig = Field(
+        default_factory=ProcessingConfig, description="The post processing of the image."
+    )
+
+
+class BECImageItem(BECConnector, pg.ImageItem):
+    USER_ACCESS = [
+        "rpc_id",
+        "config_dict",
+        "set",
+        "set_fft",
+        "set_log",
+        "set_rotation",
+        "set_transpose",
+        "set_opacity",
+        "set_autorange",
+        "set_color_map",
+        "set_auto_downsample",
+        "set_monitor",
+        "set_vrange",
+        "get_data",
+    ]
+
+    def __init__(
+        self,
+        config: Optional[ImageItemConfig] = None,
+        gui_id: Optional[str] = None,
+        parent_image: Optional[BECImageShow] = None,
+        **kwargs,
+    ):
+        if config is None:
+            config = ImageItemConfig(widget_class=self.__class__.__name__)
+            self.config = config
+        else:
+            self.config = config
+        super().__init__(config=config, gui_id=gui_id)
+        pg.ImageItem.__init__(self)
+
+        self.parent_image = parent_image
+        self.colorbar_bar = None
+
+        self._add_color_bar(
+            self.config.color_bar, self.config.vrange
+        )  # TODO can also support None to not have any colorbar
+        self.apply_config()
+        if kwargs:
+            self.set(**kwargs)
+
+    def apply_config(self):
+        """
+        Apply current configuration.
+        """
+        self.set_color_map(self.config.color_map)
+        self.set_auto_downsample(self.config.downsample)
+        if self.config.vrange is not None:
+            self.set_vrange(vrange=self.config.vrange)
+
+    def set(self, **kwargs):
+        """
+        Set the properties of the image.
+
+        Args:
+            **kwargs: Keyword arguments for the properties to be set.
+
+        Possible properties:
+            - downsample
+            - color_map
+            - monitor
+            - opacity
+            - vrange
+            - fft
+            - log
+            - rot
+            - transpose
+        """
+        method_map = {
+            "downsample": self.set_auto_downsample,
+            "color_map": self.set_color_map,
+            "monitor": self.set_monitor,
+            "opacity": self.set_opacity,
+            "vrange": self.set_vrange,
+            "fft": self.set_fft,
+            "log": self.set_log,
+            "rot": self.set_rotation,
+            "transpose": self.set_transpose,
+        }
+        for key, value in kwargs.items():
+            if key in method_map:
+                method_map[key](value)
+            else:
+                print(f"Warning: '{key}' is not a recognized property.")
+
+    def set_fft(self, enable: bool = False):
+        """
+        Set the FFT of the image.
+
+        Args:
+            enable(bool): Whether to perform FFT on the monitor data.
+        """
+        self.config.processing.fft = enable
+
+    def set_log(self, enable: bool = False):
+        """
+        Set the log of the image.
+
+        Args:
+            enable(bool): Whether to perform log on the monitor data.
+        """
+        self.config.processing.log = enable
+        if enable and self.color_bar and self.config.color_bar == "full":
+            self.color_bar.autoHistogramRange()
+
+    def set_rotation(self, deg_90: int = 0):
+        """
+        Set the rotation of the image.
+
+        Args:
+            deg_90(int): The rotation angle of the monitor data before displaying.
+        """
+        self.config.processing.rotation = deg_90
+
+    def set_transpose(self, enable: bool = False):
+        """
+        Set the transpose of the image.
+
+        Args:
+            enable(bool): Whether to transpose the image.
+        """
+        self.config.processing.transpose = enable
+
+    def set_opacity(self, opacity: float = 1.0):
+        """
+        Set the opacity of the image.
+
+        Args:
+            opacity(float): The opacity of the image.
+        """
+        self.setOpacity(opacity)
+        self.config.opacity = opacity
+
+    def set_autorange(self, autorange: bool = False):
+        """
+        Set the autorange of the color bar.
+
+        Args:
+            autorange(bool): Whether to autorange the color bar.
+        """
+        self.config.autorange = autorange
+        if self.color_bar is not None:
+            self.color_bar.autoHistogramRange()
+
+    def set_color_map(self, cmap: str = "magma"):
+        """
+        Set the color map of the image.
+
+        Args:
+            cmap(str): The color map of the image.
+        """
+        self.setColorMap(cmap)
+        if self.color_bar is not None:
+            if self.config.color_bar == "simple":
+                self.color_bar.setColorMap(cmap)
+            elif self.config.color_bar == "full":
+                self.color_bar.gradient.loadPreset(cmap)
+        self.config.color_map = cmap
+
+    def set_auto_downsample(self, auto: bool = True):
+        """
+        Set the auto downsample of the image.
+
+        Args:
+            auto(bool): Whether to downsample the image.
+        """
+        self.setAutoDownsample(auto)
+        self.config.downsample = auto
+
+    def set_monitor(self, monitor: str):
+        """
+        Set the monitor of the image.
+
+        Args:
+            monitor(str): The name of the monitor.
+        """
+        self.config.monitor = monitor
+
+    def set_vrange(self, vmin: float = None, vmax: float = None, vrange: tuple[int, int] = None):
+        """
+        Set the range of the color bar.
+
+        Args:
+            vmin(float): Minimum value of the color bar.
+            vmax(float): Maximum value of the color bar.
+        """
+        if vrange is not None:
+            vmin, vmax = vrange
+        self.setLevels([vmin, vmax])
+        self.config.vrange = (vmin, vmax)
+        self.config.autorange = False
+        if self.color_bar is not None:
+            if self.config.color_bar == "simple":
+                self.color_bar.setLevels(low=vmin, high=vmax)
+            elif self.config.color_bar == "full":
+                self.color_bar.setLevels(min=vmin, max=vmax)
+                self.color_bar.setHistogramRange(vmin - 0.1 * vmin, vmax + 0.1 * vmax)
+
+    def get_data(self) -> np.ndarray:
+        """
+        Get the data of the image.
+        Returns:
+            np.ndarray: The data of the image.
+        """
+        return self.image
+
+    def _add_color_bar(
+        self, color_bar_style: str = "simple", vrange: Optional[tuple[int, int]] = None
+    ):
+        """
+        Add color bar to the layout.
+
+        Args:
+            style(Literal["simple,full"]): The style of the color bar.
+            vrange(tuple[int,int]): The range of the color bar.
+        """
+        if color_bar_style == "simple":
+            self.color_bar = pg.ColorBarItem(colorMap=self.config.color_map)
+            if vrange is not None:
+                self.color_bar.setLevels(low=vrange[0], high=vrange[1])
+            self.color_bar.setImageItem(self)
+            self.parent_image.addItem(self.color_bar)  # , row=0, col=1)
+            self.config.color_bar = "simple"
+        elif color_bar_style == "full":
+            # Setting histogram
+            self.color_bar = pg.HistogramLUTItem()
+            self.color_bar.setImageItem(self)
+            self.color_bar.gradient.loadPreset(self.config.color_map)
+            if vrange is not None:
+                self.color_bar.setLevels(min=vrange[0], max=vrange[1])
+                self.color_bar.setHistogramRange(
+                    vrange[0] - 0.1 * vrange[0], vrange[1] + 0.1 * vrange[1]
+                )
+
+            # Adding histogram to the layout
+            self.parent_image.addItem(self.color_bar)  # , row=0, col=1)
+
+            # save settings
+            self.config.color_bar = "full"
+        else:
+            raise ValueError("style should be 'simple' or 'full'")

bec_widgets/widgets/figure/plots/image/image_processor.py

@@ -0,0 +1,152 @@
+from __future__ import annotations
+
+from typing import Optional
+
+import numpy as np
+from pydantic import BaseModel, Field
+from qtpy.QtCore import QObject, Signal, Slot
+
+
+class ProcessingConfig(BaseModel):
+    fft: Optional[bool] = Field(False, description="Whether to perform FFT on the monitor data.")
+    log: Optional[bool] = Field(False, description="Whether to perform log on the monitor data.")
+    center_of_mass: Optional[bool] = Field(
+        False, description="Whether to calculate the center of mass of the monitor data."
+    )
+    transpose: Optional[bool] = Field(
+        False, description="Whether to transpose the monitor data before displaying."
+    )
+    rotation: Optional[int] = Field(
+        None, description="The rotation angle of the monitor data before displaying."
+    )
+
+
+class ImageProcessor:
+    """
+    Class for processing the image data.
+    """
+
+    def __init__(self, config: ProcessingConfig = None):
+        if config is None:
+            config = ProcessingConfig()
+        self.config = config
+
+    def set_config(self, config: ProcessingConfig):
+        """
+        Set the configuration of the processor.
+
+        Args:
+            config(ProcessingConfig): The configuration of the processor.
+        """
+        self.config = config
+
+    def FFT(self, data: np.ndarray) -> np.ndarray:
+        """
+        Perform FFT on the data.
+
+        Args:
+            data(np.ndarray): The data to be processed.
+
+        Returns:
+            np.ndarray: The processed data.
+        """
+        return np.abs(np.fft.fftshift(np.fft.fft2(data)))
+
+    def rotation(self, data: np.ndarray, rotate_90: int) -> np.ndarray:
+        """
+        Rotate the data by 90 degrees n times.
+
+        Args:
+            data(np.ndarray): The data to be processed.
+            rotate_90(int): The number of 90 degree rotations.
+
+        Returns:
+            np.ndarray: The processed data.
+        """
+        return np.rot90(data, k=rotate_90, axes=(0, 1))
+
+    def transpose(self, data: np.ndarray) -> np.ndarray:
+        """
+        Transpose the data.
+
+        Args:
+            data(np.ndarray): The data to be processed.
+
+        Returns:
+            np.ndarray: The processed data.
+        """
+        return np.transpose(data)
+
+    def log(self, data: np.ndarray) -> np.ndarray:
+        """
+        Perform log on the data.
+
+        Args:
+            data(np.ndarray): The data to be processed.
+
+        Returns:
+            np.ndarray: The processed data.
+        """
+        # TODO this is not final solution -> data should stay as int16
+        data = data.astype(np.float32)
+        offset = 1e-6
+        data_offset = data + offset
+        return np.log10(data_offset)
+
+    # def center_of_mass(self, data: np.ndarray) -> tuple:  # TODO check functionality
+    #     return np.unravel_index(np.argmax(data), data.shape)
+
+    def process_image(self, data: np.ndarray) -> np.ndarray:
+        """
+        Process the data according to the configuration.
+
+        Args:
+            data(np.ndarray): The data to be processed.
+
+        Returns:
+            np.ndarray: The processed data.
+        """
+        if self.config.fft:
+            data = self.FFT(data)
+        if self.config.rotation is not None:
+            data = self.rotation(data, self.config.rotation)
+        if self.config.transpose:
+            data = self.transpose(data)
+        if self.config.log:
+            data = self.log(data)
+        return data
+
+
+class ProcessorWorker(QObject):
+    """
+    Worker for processing the image data.
+    """
+
+    processed = Signal(str, np.ndarray)
+    stopRequested = Signal()
+    finished = Signal()
+
+    def __init__(self, processor):
+        super().__init__()
+        self.processor = processor
+        self._isRunning = False
+        self.stopRequested.connect(self.stop)
+
+    @Slot(str, np.ndarray)
+    def process_image(self, device: str, image: np.ndarray):
+        """
+        Process the image data.
+
+        Args:
+            device(str): The name of the device.
+            image(np.ndarray): The image data.
+        """
+        self._isRunning = True
+        processed_image = self.processor.process_image(image)
+        self._isRunning = False
+        if not self._isRunning:
+            self.processed.emit(device, processed_image)
+            self.finished.emit()
+
+    def stop(self):
+        self._isRunning = False

bec_widgets/widgets/{plots → figure/plots/motor_map}/motor_map.py

@@ -13,8 +13,8 @@ from qtpy.QtCore import Slot as pyqtSlot
 from qtpy.QtWidgets import QWidget
 
 from bec_widgets.utils import EntryValidator
-from bec_widgets.widgets.plots.plot_base import BECPlotBase, SubplotConfig
-from bec_widgets.widgets.plots.waveform import Signal, SignalData
+from bec_widgets.widgets.figure.plots.plot_base import BECPlotBase, SubplotConfig
+from bec_widgets.widgets.figure.plots.waveform.waveform import Signal, SignalData
 
 
 class MotorMapConfig(SubplotConfig):

bec_widgets/widgets/{plots → figure/plots/waveform}/waveform.py

@@ -7,50 +7,19 @@ import numpy as np
 import pyqtgraph as pg
 from bec_lib.endpoints import MessageEndpoints
 from bec_lib.scan_data import ScanData
-from pydantic import BaseModel, Field, ValidationError
-from pyqtgraph import mkBrush
-from qtpy import QtCore
+from pydantic import Field, ValidationError
 from qtpy.QtCore import Signal as pyqtSignal
 from qtpy.QtCore import Slot as pyqtSlot
 from qtpy.QtWidgets import QWidget
 
-from bec_widgets.utils import BECConnector, Colors, ConnectionConfig, EntryValidator
-from bec_widgets.widgets.plots.plot_base import BECPlotBase, SubplotConfig
-
-
-class SignalData(BaseModel):
-    """The data configuration of a signal in the 1D waveform widget for x and y axis."""
-
-    name: str
-    entry: str
-    unit: Optional[str] = None  # todo implement later
-    modifier: Optional[str] = None  # todo implement later
-    limits: Optional[list[float]] = None  # todo implement later
-
-
-class Signal(BaseModel):
-    """The configuration of a signal in the 1D waveform widget."""
-
-    source: str
-    x: SignalData  # TODO maybe add metadata for config gui later
-    y: SignalData
-    z: Optional[SignalData] = None
-
-
-class CurveConfig(ConnectionConfig):
-    parent_id: Optional[str] = Field(None, description="The parent plot of the curve.")
-    label: Optional[str] = Field(None, description="The label of the curve.")
-    color: Optional[Any] = Field(None, description="The color of the curve.")
-    symbol: Optional[str] = Field("o", description="The symbol of the curve.")
-    symbol_color: Optional[str] = Field(None, description="The color of the symbol of the curve.")
-    symbol_size: Optional[int] = Field(5, description="The size of the symbol of the curve.")
-    pen_width: Optional[int] = Field(2, description="The width of the pen of the curve.")
-    pen_style: Optional[Literal["solid", "dash", "dot", "dashdot"]] = Field(
-        "solid", description="The style of the pen of the curve."
-    )
-    source: Optional[str] = Field(None, description="The source of the curve.")
-    signals: Optional[Signal] = Field(None, description="The signal of the curve.")
-    colormap: Optional[str] = Field("plasma", description="The colormap of the curves z gradient.")
+from bec_widgets.utils import Colors, EntryValidator
+from bec_widgets.widgets.figure.plots.plot_base import BECPlotBase, SubplotConfig
+from bec_widgets.widgets.figure.plots.waveform.waveform_curve import (
+    BECCurve,
+    CurveConfig,
+    Signal,
+    SignalData,
+)
 
 
 class Waveform1DConfig(SubplotConfig):
@@ -62,188 +31,6 @@ class Waveform1DConfig(SubplotConfig):
     )
 
 
-class BECCurve(BECConnector, pg.PlotDataItem):
-    USER_ACCESS = [
-        "remove",
-        "rpc_id",
-        "config_dict",
-        "set",
-        "set_data",
-        "set_color",
-        "set_colormap",
-        "set_symbol",
-        "set_symbol_color",
-        "set_symbol_size",
-        "set_pen_width",
-        "set_pen_style",
-        "get_data",
-    ]
-
-    def __init__(
-        self,
-        name: Optional[str] = None,
-        config: Optional[CurveConfig] = None,
-        gui_id: Optional[str] = None,
-        parent_item: Optional[pg.PlotItem] = None,
-        **kwargs,
-    ):
-        if config is None:
-            config = CurveConfig(label=name, widget_class=self.__class__.__name__)
-            self.config = config
-        else:
-            self.config = config
-            # config.widget_class = self.__class__.__name__
-        super().__init__(config=config, gui_id=gui_id)
-        pg.PlotDataItem.__init__(self, name=name)
-
-        self.parent_item = parent_item
-        self.apply_config()
-        if kwargs:
-            self.set(**kwargs)
-
-    def apply_config(self):
-        pen_style_map = {
-            "solid": QtCore.Qt.SolidLine,
-            "dash": QtCore.Qt.DashLine,
-            "dot": QtCore.Qt.DotLine,
-            "dashdot": QtCore.Qt.DashDotLine,
-        }
-        pen_style = pen_style_map.get(self.config.pen_style, QtCore.Qt.SolidLine)
-
-        pen = pg.mkPen(color=self.config.color, width=self.config.pen_width, style=pen_style)
-        self.setPen(pen)
-
-        if self.config.symbol:
-            symbol_color = self.config.symbol_color or self.config.color
-            brush = mkBrush(color=symbol_color)
-            self.setSymbolBrush(brush)
-            self.setSymbolSize(self.config.symbol_size)
-            self.setSymbol(self.config.symbol)
-
-    def set_data(self, x, y):
-        if self.config.source == "custom":
-            self.setData(x, y)
-        else:
-            raise ValueError(f"Source {self.config.source} do not allow custom data setting.")
-
-    def set(self, **kwargs):
-        """
-        Set the properties of the curve.
-
-        Args:
-            **kwargs: Keyword arguments for the properties to be set.
-
-        Possible properties:
-            - color: str
-            - symbol: str
-            - symbol_color: str
-            - symbol_size: int
-            - pen_width: int
-            - pen_style: Literal["solid", "dash", "dot", "dashdot"]
-        """
-
-        # Mapping of keywords to setter methods
-        method_map = {
-            "color": self.set_color,
-            "colormap": self.set_colormap,
-            "symbol": self.set_symbol,
-            "symbol_color": self.set_symbol_color,
-            "symbol_size": self.set_symbol_size,
-            "pen_width": self.set_pen_width,
-            "pen_style": self.set_pen_style,
-        }
-        for key, value in kwargs.items():
-            if key in method_map:
-                method_map[key](value)
-            else:
-                print(f"Warning: '{key}' is not a recognized property.")
-
-    def set_color(self, color: str, symbol_color: Optional[str] = None):
-        """
-        Change the color of the curve.
-
-        Args:
-            color(str): Color of the curve.
-            symbol_color(str, optional): Color of the symbol. Defaults to None.
-        """
-        self.config.color = color
-        self.config.symbol_color = symbol_color or color
-        self.apply_config()
-
-    def set_symbol(self, symbol: str):
-        """
-        Change the symbol of the curve.
-
-        Args:
-            symbol(str): Symbol of the curve.
-        """
-        self.config.symbol = symbol
-        self.apply_config()
-
-    def set_symbol_color(self, symbol_color: str):
-        """
-        Change the symbol color of the curve.
-
-        Args:
-            symbol_color(str): Color of the symbol.
-        """
-        self.config.symbol_color = symbol_color
-        self.apply_config()
-
-    def set_symbol_size(self, symbol_size: int):
-        """
-        Change the symbol size of the curve.
-
-        Args:
-            symbol_size(int): Size of the symbol.
-        """
-        self.config.symbol_size = symbol_size
-        self.apply_config()
-
-    def set_pen_width(self, pen_width: int):
-        """
-        Change the pen width of the curve.
-
-        Args:
-            pen_width(int): Width of the pen.
-        """
-        self.config.pen_width = pen_width
-        self.apply_config()
-
-    def set_pen_style(self, pen_style: Literal["solid", "dash", "dot", "dashdot"]):
-        """
-        Change the pen style of the curve.
-
-        Args:
-            pen_style(Literal["solid", "dash", "dot", "dashdot"]): Style of the pen.
-        """
-        self.config.pen_style = pen_style
-        self.apply_config()
-
-    def set_colormap(self, colormap: str):
-        """
-        Set the colormap for the scatter plot z gradient.
-
-        Args:
-            colormap(str): Colormap for the scatter plot.
-        """
-        self.config.colormap = colormap
-
-    def get_data(self) -> tuple[np.ndarray, np.ndarray]:
-        """
-        Get the data of the curve.
-        Returns:
-            tuple[np.ndarray,np.ndarray]: X and Y data of the curve.
-        """
-        x_data, y_data = self.getData()
-        return x_data, y_data
-
-    def remove(self):
-        """Remove the curve from the plot."""
-        self.parent_item.removeItem(self)
-        self.cleanup()
-
-
 class BECWaveform(BECPlotBase):
     USER_ACCESS = [
         "rpc_id",