attune-ai 2.0.0__py3-none-any.whl

attune_llm/agent_factory/crews/health_check.py

@@ -0,0 +1,1262 @@
+"""Health Check Crew
+
+A multi-agent crew that diagnoses and fixes project health issues.
+Uses XML-enhanced prompts for structured, consistent output.
+
+Agents:
+1. Health Lead (Coordinator) - Orchestrates checks, prioritizes fixes
+2. Lint Fixer - Runs ruff, generates auto-fix patches
+3. Type Resolver - Runs mypy, suggests type annotations
+4. Test Doctor - Runs pytest, diagnoses and fixes test failures
+5. Dep Auditor - Checks outdated/vulnerable dependencies
+
+Usage:
+    from attune_llm.agent_factory.crews import HealthCheckCrew
+
+    crew = HealthCheckCrew(api_key="...")
+    report = await crew.check(path=".", auto_fix=True)
+
+    print(f"Health Score: {report.health_score}")
+    for fix in report.applied_fixes:
+        print(f"  Fixed: {fix.title}")
+
+Copyright 2025 Smart-AI-Memory
+Licensed under Fair Source License 0.9
+"""
+
+import logging
+import subprocess
+from dataclasses import dataclass, field
+from enum import Enum
+from pathlib import Path
+from typing import Any
+
+logger = logging.getLogger(__name__)
+
+
+class HealthCategory(Enum):
+    """Health check categories."""
+
+    LINT = "lint"
+    TYPES = "types"
+    TESTS = "tests"
+    DEPENDENCIES = "dependencies"
+    SECURITY = "security"
+    GENERAL = "general"
+
+
+class IssueSeverity(Enum):
+    """Issue severity levels."""
+
+    CRITICAL = "critical"
+    HIGH = "high"
+    MEDIUM = "medium"
+    LOW = "low"
+    INFO = "info"
+
+
+class FixStatus(Enum):
+    """Status of an attempted fix."""
+
+    APPLIED = "applied"
+    SUGGESTED = "suggested"
+    FAILED = "failed"
+    SKIPPED = "skipped"
+
+
+@dataclass
+class HealthIssue:
+    """A single health issue found."""
+
+    title: str
+    description: str
+    category: HealthCategory
+    severity: IssueSeverity
+    file_path: str | None = None
+    line_number: int | None = None
+    code_snippet: str | None = None
+    tool: str | None = None
+    rule_id: str | None = None
+    metadata: dict = field(default_factory=dict)
+
+    def to_dict(self) -> dict:
+        """Convert issue to dictionary."""
+        return {
+            "title": self.title,
+            "description": self.description,
+            "category": self.category.value,
+            "severity": self.severity.value,
+            "file_path": self.file_path,
+            "line_number": self.line_number,
+            "code_snippet": self.code_snippet,
+            "tool": self.tool,
+            "rule_id": self.rule_id,
+            "metadata": self.metadata,
+        }
+
+
+@dataclass
+class HealthFix:
+    """A fix applied or suggested."""
+
+    title: str
+    description: str
+    category: HealthCategory
+    status: FixStatus
+    file_path: str | None = None
+    before_code: str | None = None
+    after_code: str | None = None
+    patch: str | None = None
+    related_issues: list[str] = field(default_factory=list)
+    metadata: dict = field(default_factory=dict)
+
+    def to_dict(self) -> dict:
+        """Convert fix to dictionary."""
+        return {
+            "title": self.title,
+            "description": self.description,
+            "category": self.category.value,
+            "status": self.status.value,
+            "file_path": self.file_path,
+            "before_code": self.before_code,
+            "after_code": self.after_code,
+            "patch": self.patch,
+            "related_issues": self.related_issues,
+            "metadata": self.metadata,
+        }
+
+
+@dataclass
+class HealthCheckReport:
+    """Complete health check report."""
+
+    target: str
+    issues: list[HealthIssue]
+    fixes: list[HealthFix]
+    health_score: float
+    check_duration_seconds: float = 0.0
+    agents_used: list[str] = field(default_factory=list)
+    memory_graph_hits: int = 0
+    checks_run: dict = field(default_factory=dict)
+    metadata: dict = field(default_factory=dict)
+
+    @property
+    def critical_issues(self) -> list[HealthIssue]:
+        """Get critical severity issues."""
+        return [i for i in self.issues if i.severity == IssueSeverity.CRITICAL]
+
+    @property
+    def applied_fixes(self) -> list[HealthFix]:
+        """Get successfully applied fixes."""
+        return [f for f in self.fixes if f.status == FixStatus.APPLIED]
+
+    @property
+    def issues_by_category(self) -> dict[str, list[HealthIssue]]:
+        """Group issues by category."""
+        result: dict[str, list[HealthIssue]] = {}
+        for issue in self.issues:
+            cat = issue.category.value
+            if cat not in result:
+                result[cat] = []
+            result[cat].append(issue)
+        return result
+
+    @property
+    def is_healthy(self) -> bool:
+        """Check if project is healthy (score >= 80)."""
+        return self.health_score >= 80.0
+
+    def to_dict(self) -> dict:
+        """Convert report to dictionary."""
+        return {
+            "target": self.target,
+            "issues": [i.to_dict() for i in self.issues],
+            "fixes": [f.to_dict() for f in self.fixes],
+            "health_score": self.health_score,
+            "check_duration_seconds": self.check_duration_seconds,
+            "agents_used": self.agents_used,
+            "memory_graph_hits": self.memory_graph_hits,
+            "checks_run": self.checks_run,
+            "is_healthy": self.is_healthy,
+            "issue_counts": {
+                "critical": len(self.critical_issues),
+                "total": len(self.issues),
+                "by_category": {k: len(v) for k, v in self.issues_by_category.items()},
+            },
+            "fix_counts": {
+                "applied": len(self.applied_fixes),
+                "total": len(self.fixes),
+            },
+            "metadata": self.metadata,
+        }
+
+
+@dataclass
+class HealthCheckConfig:
+    """Configuration for health check crew."""
+
+    # API Configuration
+    provider: str = "anthropic"
+    api_key: str | None = None
+
+    # Check Configuration
+    check_lint: bool = True
+    check_types: bool = True
+    check_tests: bool = True
+    check_deps: bool = True
+    auto_fix: bool = False  # Apply fixes automatically
+    fix_safe_only: bool = True  # Only apply safe fixes
+
+    # Paths
+    target_path: str = "."
+    exclude_paths: list[str] = field(default_factory=lambda: [".git", "venv", "__pycache__"])
+
+    # Memory Graph
+    memory_graph_enabled: bool = True
+    memory_graph_path: str = "patterns/health_check_memory.json"
+
+    # Agent Tiers
+    lead_tier: str = "premium"
+    lint_tier: str = "capable"
+    types_tier: str = "capable"
+    tests_tier: str = "capable"
+    deps_tier: str = "capable"
+
+    # XML Prompts
+    xml_prompts_enabled: bool = True
+    xml_schema_version: str = "1.0"
+
+    # Resilience
+    resilience_enabled: bool = True
+    timeout_seconds: float = 300.0
+
+
+# XML Prompt Templates for Health Check Agents
+XML_PROMPT_TEMPLATES = {
+    "health_lead": """<agent role="health_lead" version="{schema_version}">
+  <identity>
+    <role>Health Check Coordinator</role>
+    <expertise>Project health assessment, issue prioritization, fix orchestration</expertise>
+  </identity>
+
+  <goal>
+    Coordinate the health check team to diagnose and fix project issues.
+    Synthesize findings from all agents into a prioritized action plan.
+  </goal>
+
+  <instructions>
+    <step>Review health check results from all team members</step>
+    <step>Prioritize issues by severity and impact</step>
+    <step>Identify quick wins (easy fixes with high impact)</step>
+    <step>Create an ordered fix plan</step>
+    <step>Calculate overall health score (0-100)</step>
+    <step>Generate executive summary with recommendations</step>
+  </instructions>
+
+  <constraints>
+    <rule>Be conservative with auto-fix recommendations</rule>
+    <rule>Prioritize breaking issues first</rule>
+    <rule>Consider fix dependencies (some fixes enable others)</rule>
+    <rule>Flag risky fixes that need human review</rule>
+  </constraints>
+
+  <output_format>
+    <section name="summary">Executive summary of health status</section>
+    <section name="health_score">Numeric score 0-100</section>
+    <section name="critical_issues">Blocking issues requiring immediate attention</section>
+    <section name="fix_plan">Ordered list of recommended fixes</section>
+    <section name="metrics">Lint errors, type errors, test failures, dep issues</section>
+  </output_format>
+</agent>""",
+    "lint_fixer": """<agent role="lint_fixer" version="{schema_version}">
+  <identity>
+    <role>Lint Analyst & Fixer</role>
+    <expertise>Code style, ruff rules, auto-formatting, code quality</expertise>
+  </identity>
+
+  <goal>
+    Analyze lint issues and generate fixes. Apply safe auto-fixes when enabled.
+  </goal>
+
+  <instructions>
+    <step>Parse ruff output to identify all lint violations</step>
+    <step>Categorize by rule type (style, error, security)</step>
+    <step>Identify auto-fixable issues (ruff --fix compatible)</step>
+    <step>Generate patch for complex issues requiring manual fix</step>
+    <step>Explain why each fix is necessary</step>
+  </instructions>
+
+  <constraints>
+    <rule>Only auto-fix style and formatting issues</rule>
+    <rule>Flag security-related lint issues as high priority</rule>
+    <rule>Preserve code semantics - never change behavior</rule>
+    <rule>Respect noqa comments and intentional suppressions</rule>
+  </constraints>
+
+  <tools>
+    <tool name="ruff">python -m ruff check --output-format=json</tool>
+    <tool name="ruff_fix">python -m ruff check --fix</tool>
+  </tools>
+
+  <output_format>
+    <section name="issues">List of lint issues with file, line, rule, message</section>
+    <section name="auto_fixable">Issues that can be auto-fixed</section>
+    <section name="manual_fixes">Issues requiring manual intervention with suggested code</section>
+    <section name="summary">Count by category and severity</section>
+  </output_format>
+</agent>""",
+    "type_resolver": """<agent role="type_resolver" version="{schema_version}">
+  <identity>
+    <role>Type Error Resolver</role>
+    <expertise>Python type hints, mypy, type inference, generic types</expertise>
+  </identity>
+
+  <goal>
+    Diagnose type errors and suggest type annotations to resolve them.
+  </goal>
+
+  <instructions>
+    <step>Parse mypy output to identify all type errors</step>
+    <step>Categorize errors (missing annotation, incompatible types, etc.)</step>
+    <step>Infer correct types from context and usage</step>
+    <step>Generate type stub suggestions for third-party libraries</step>
+    <step>Suggest incremental typing strategy for untyped code</step>
+  </instructions>
+
+  <constraints>
+    <rule>Prefer simple types over complex generics when possible</rule>
+    <rule>Use | union syntax (Python 3.10+) over Union</rule>
+    <rule>Suggest Any only as last resort</rule>
+    <rule>Consider runtime type checking implications</rule>
+  </constraints>
+
+  <tools>
+    <tool name="mypy">python -m mypy --output=json</tool>
+  </tools>
+
+  <output_format>
+    <section name="errors">List of type errors with file, line, message</section>
+    <section name="fixes">Suggested type annotations for each error</section>
+    <section name="stubs">Type stubs needed for third-party packages</section>
+    <section name="summary">Error count and typing coverage estimate</section>
+  </output_format>
+</agent>""",
+    "test_doctor": """<agent role="test_doctor" version="{schema_version}">
+  <identity>
+    <role>Test Failure Diagnostician</role>
+    <expertise>pytest, test fixtures, mocking, assertion debugging</expertise>
+  </identity>
+
+  <goal>
+    Diagnose test failures and suggest fixes to make tests pass.
+  </goal>
+
+  <instructions>
+    <step>Parse pytest output to identify failing tests</step>
+    <step>Analyze failure type (assertion, exception, timeout, fixture)</step>
+    <step>Determine root cause (test bug vs code bug)</step>
+    <step>Generate fix for test-side issues</step>
+    <step>Flag code-side issues for other agents</step>
+    <step>Identify flaky tests that need stabilization</step>
+  </instructions>
+
+  <constraints>
+    <rule>Distinguish between test bugs and code bugs</rule>
+    <rule>Never suggest removing assertions to fix tests</rule>
+    <rule>Prefer fixing test setup over mocking more</rule>
+    <rule>Flag tests that test implementation not behavior</rule>
+  </constraints>
+
+  <tools>
+    <tool name="pytest">python -m pytest --tb=short -q</tool>
+    <tool name="pytest_collect">python -m pytest --collect-only -q</tool>
+  </tools>
+
+  <output_format>
+    <section name="failures">List of failing tests with traceback summary</section>
+    <section name="diagnosis">Root cause analysis for each failure</section>
+    <section name="test_fixes">Fixes for test-side issues</section>
+    <section name="code_issues">Code bugs discovered via tests</section>
+    <section name="summary">Pass/fail counts and coverage if available</section>
+  </output_format>
+</agent>""",
+    "dep_auditor": """<agent role="dep_auditor" version="{schema_version}">
+  <identity>
+    <role>Dependency Auditor</role>
+    <expertise>pip, package versions, security advisories, compatibility</expertise>
+  </identity>
+
+  <goal>
+    Audit dependencies for security vulnerabilities and outdated packages.
+  </goal>
+
+  <instructions>
+    <step>Parse requirements.txt/pyproject.toml for dependencies</step>
+    <step>Check for known security vulnerabilities (pip-audit)</step>
+    <step>Identify outdated packages with available updates</step>
+    <step>Assess update risk (major vs minor vs patch)</step>
+    <step>Check for dependency conflicts</step>
+    <step>Suggest safe update path</step>
+  </instructions>
+
+  <constraints>
+    <rule>Prioritize security vulnerabilities over outdated packages</rule>
+    <rule>Be conservative with major version upgrades</rule>
+    <rule>Check changelog for breaking changes before suggesting upgrades</rule>
+    <rule>Consider transitive dependency impacts</rule>
+  </constraints>
+
+  <tools>
+    <tool name="pip_audit">pip-audit --format=json</tool>
+    <tool name="pip_outdated">pip list --outdated --format=json</tool>
+  </tools>
+
+  <output_format>
+    <section name="vulnerabilities">Security issues with CVE and severity</section>
+    <section name="outdated">Packages with available updates</section>
+    <section name="conflicts">Dependency conflicts detected</section>
+    <section name="update_plan">Safe update sequence</section>
+    <section name="summary">Vulnerability count and overall dep health</section>
+  </output_format>
+</agent>""",
+}
+
+
+class HealthCheckCrew:
+    """Multi-agent crew for project health diagnosis and fixing.
+
+    The crew consists of 5 specialized agents using XML-enhanced prompts:
+
+    1. **Health Lead** (Coordinator)
+       - Orchestrates the health check team
+       - Synthesizes findings from all agents
+       - Prioritizes fixes by impact
+       - Calculates health score
+       - Model: Premium tier
+
+    2. **Lint Fixer** (Analyst)
+       - Runs ruff for lint checking
+       - Identifies auto-fixable issues
+       - Generates patches for manual fixes
+       - Model: Capable tier
+
+    3. **Type Resolver** (Analyst)
+       - Runs mypy for type checking
+       - Suggests type annotations
+       - Generates type stubs
+       - Model: Capable tier
+
+    4. **Test Doctor** (Analyst)
+       - Runs pytest for test checking
+       - Diagnoses test failures
+       - Distinguishes test bugs from code bugs
+       - Model: Capable tier
+
+    5. **Dep Auditor** (Analyst)
+       - Checks for vulnerabilities
+       - Identifies outdated packages
+       - Suggests safe update paths
+       - Model: Capable tier
+
+    Example:
+        crew = HealthCheckCrew(api_key="...")
+        report = await crew.check(path=".", auto_fix=True)
+
+        if report.is_healthy:
+            print("Project is healthy!")
+        else:
+            print(f"Health Score: {report.health_score}/100")
+            for issue in report.critical_issues:
+                print(f"  - {issue.title}")
+
+    """
+
+    def __init__(self, config: HealthCheckConfig | None = None, **kwargs: Any):
+        """Initialize the Health Check Crew.
+
+        Args:
+            config: HealthCheckConfig or pass individual params as kwargs
+            **kwargs: Individual config parameters (api_key, provider, etc.)
+
+        """
+        if config:
+            self.config = config
+        else:
+            self.config = HealthCheckConfig(**kwargs)
+
+        self._factory: Any = None
+        self._agents: dict[str, Any] = {}
+        self._workflow: Any = None
+        self._graph: Any = None
+        self._initialized = False
+
+    def _render_xml_prompt(self, template_key: str) -> str:
+        """Render XML prompt template with config values."""
+        template = XML_PROMPT_TEMPLATES.get(template_key, "")
+        return template.format(schema_version=self.config.xml_schema_version)
+
+    def _get_system_prompt(self, agent_key: str, fallback: str) -> str:
+        """Get system prompt - XML if enabled, fallback otherwise."""
+        if self.config.xml_prompts_enabled:
+            return self._render_xml_prompt(agent_key)
+        return fallback
+
+    async def _initialize(self) -> None:
+        """Lazy initialization of agents and workflow."""
+        if self._initialized:
+            return
+
+        from attune_llm.agent_factory import AgentFactory, Framework
+
+        # Check if CrewAI is available
+        try:
+            from attune_llm.agent_factory.adapters.crewai_adapter import _check_crewai
+
+            use_crewai = _check_crewai()
+        except ImportError:
+            use_crewai = False
+
+        # Use CrewAI if available, otherwise fall back to Native
+        framework = Framework.CREWAI if use_crewai else Framework.NATIVE
+
+        self._factory = AgentFactory(
+            framework=framework,
+            provider=self.config.provider,
+            api_key=self.config.api_key,
+        )
+
+        # Initialize Memory Graph if enabled
+        if self.config.memory_graph_enabled:
+            try:
+                from attune.memory import MemoryGraph
+
+                self._graph = MemoryGraph(path=self.config.memory_graph_path)
+            except ImportError:
+                logger.warning("Memory Graph not available, continuing without it")
+
+        # Create the 5 specialized agents
+        await self._create_agents()
+
+        # Create hierarchical workflow
+        await self._create_workflow()
+
+        self._initialized = True
+
+    async def _create_agents(self) -> None:
+        """Create the 5 specialized health check agents with XML prompts."""
+        # 1. Health Lead (Coordinator)
+        self._agents["lead"] = self._factory.create_agent(
+            name="health_lead",
+            role="coordinator",
+            description="Senior engineer who orchestrates the health check team",
+            system_prompt=self._get_system_prompt(
+                "health_lead",
+                """You are the Health Lead, coordinating project health checks.
+
+Your responsibilities:
+1. Coordinate the health check team
+2. Synthesize findings from all checkers
+3. Prioritize issues by severity and impact
+4. Calculate overall health score (0-100)
+5. Generate actionable fix plan
+
+Health Score calculation:
+- Start at 100
+- Deduct 25 per critical issue
+- Deduct 10 per high issue
+- Deduct 3 per medium issue
+- Deduct 1 per low issue
+
+Be constructive and prioritize quick wins.""",
+            ),
+            model_tier=self.config.lead_tier,
+            memory_graph_enabled=self.config.memory_graph_enabled,
+            memory_graph_path=self.config.memory_graph_path,
+            resilience_enabled=self.config.resilience_enabled,
+        )
+
+        # 2. Lint Fixer
+        self._agents["lint"] = self._factory.create_agent(
+            name="lint_fixer",
+            role="analyst",
+            description="Expert at identifying and fixing lint issues",
+            system_prompt=self._get_system_prompt(
+                "lint_fixer",
+                """You are the Lint Fixer, a code quality expert.
+
+Your focus:
+1. Parse ruff output for lint violations
+2. Categorize by type (style, error, security)
+3. Identify auto-fixable issues
+4. Generate patches for complex fixes
+5. Explain each fix
+
+Rules:
+- Only auto-fix safe style issues
+- Flag security-related issues as high priority
+- Never change code behavior
+- Respect noqa comments""",
+            ),
+            model_tier=self.config.lint_tier,
+            memory_graph_enabled=self.config.memory_graph_enabled,
+            memory_graph_path=self.config.memory_graph_path,
+        )
+
+        # 3. Type Resolver
+        self._agents["types"] = self._factory.create_agent(
+            name="type_resolver",
+            role="analyst",
+            description="Expert at resolving type errors",
+            system_prompt=self._get_system_prompt(
+                "type_resolver",
+                """You are the Type Resolver, a typing expert.
+
+Your focus:
+1. Parse mypy output for type errors
+2. Categorize errors by type
+3. Infer correct types from context
+4. Generate type annotations
+5. Suggest typing strategy
+
+Rules:
+- Prefer simple types over complex generics
+- Use | union syntax (Python 3.10+)
+- Suggest Any only as last resort
+- Consider runtime implications""",
+            ),
+            model_tier=self.config.types_tier,
+            memory_graph_enabled=self.config.memory_graph_enabled,
+            memory_graph_path=self.config.memory_graph_path,
+        )
+
+        # 4. Test Doctor
+        self._agents["tests"] = self._factory.create_agent(
+            name="test_doctor",
+            role="analyst",
+            description="Expert at diagnosing test failures",
+            system_prompt=self._get_system_prompt(
+                "test_doctor",
+                """You are the Test Doctor, a testing expert.
+
+Your focus:
+1. Parse pytest output for failures
+2. Analyze failure type (assertion, exception, timeout)
+3. Determine root cause (test bug vs code bug)
+4. Generate fixes for test issues
+5. Identify flaky tests
+
+Rules:
+- Distinguish test bugs from code bugs
+- Never remove assertions to fix tests
+- Prefer fixing setup over mocking
+- Flag implementation-coupled tests""",
+            ),
+            model_tier=self.config.tests_tier,
+            memory_graph_enabled=self.config.memory_graph_enabled,
+            memory_graph_path=self.config.memory_graph_path,
+        )
+
+        # 5. Dep Auditor
+        self._agents["deps"] = self._factory.create_agent(
+            name="dep_auditor",
+            role="analyst",
+            description="Expert at auditing dependencies",
+            system_prompt=self._get_system_prompt(
+                "dep_auditor",
+                """You are the Dep Auditor, a dependency expert.
+
+Your focus:
+1. Check for security vulnerabilities
+2. Identify outdated packages
+3. Assess update risk
+4. Check for conflicts
+5. Suggest safe update paths
+
+Rules:
+- Prioritize security over outdated
+- Be conservative with major upgrades
+- Check changelogs for breaking changes
+- Consider transitive impacts""",
+            ),
+            model_tier=self.config.deps_tier,
+            memory_graph_enabled=self.config.memory_graph_enabled,
+            memory_graph_path=self.config.memory_graph_path,
+        )
+
+    async def _create_workflow(self) -> None:
+        """Create hierarchical workflow with Health Lead as manager."""
+        agents = list(self._agents.values())
+
+        self._workflow = self._factory.create_workflow(
+            name="health_check_workflow",
+            agents=agents,
+            mode="hierarchical",
+            description="Comprehensive health check with coordinated diagnosis and fixes",
+        )
+
+    async def check(
+        self,
+        path: str = ".",
+        auto_fix: bool | None = None,
+        context: dict | None = None,
+    ) -> HealthCheckReport:
+        """Perform a comprehensive health check.
+
+        Args:
+            path: Path to check (default: current directory)
+            auto_fix: Override config auto_fix setting
+            context: Optional context (focus areas, previous checks, etc.)
+
+        Returns:
+            HealthCheckReport with issues, fixes, and health score
+
+        """
+        import time
+
+        start_time = time.time()
+
+        # Initialize if needed
+        await self._initialize()
+
+        context = context or {}
+        auto_fix = auto_fix if auto_fix is not None else self.config.auto_fix
+        issues: list[HealthIssue] = []
+        fixes: list[HealthFix] = []
+        checks_run: dict[str, dict] = {}
+        memory_hits = 0
+
+        # Run the individual checks first to gather data
+        if self.config.check_lint:
+            lint_result = await self._run_lint_check(path)
+            checks_run["lint"] = lint_result
+            issues.extend(lint_result.get("issues", []))
+
+        if self.config.check_types:
+            types_result = await self._run_type_check(path)
+            checks_run["types"] = types_result
+            issues.extend(types_result.get("issues", []))
+
+        if self.config.check_tests:
+            tests_result = await self._run_test_check(path)
+            checks_run["tests"] = tests_result
+            issues.extend(tests_result.get("issues", []))
+
+        if self.config.check_deps:
+            deps_result = await self._run_dep_check(path)
+            checks_run["deps"] = deps_result
+            issues.extend(deps_result.get("issues", []))
+
+        # Check Memory Graph for similar past issues
+        if self._graph and self.config.memory_graph_enabled:
+            try:
+                similar = self._graph.find_similar(
+                    {"name": f"health_check:{path}", "description": f"Health check of {path}"},
+                    threshold=0.4,
+                    limit=10,
+                )
+                if similar:
+                    memory_hits = len(similar)
+                    context["past_checks"] = [
+                        {
+                            "name": node.name,
+                            "health_score": node.metadata.get("health_score", 0),
+                            "issues_found": node.metadata.get("issues_found", 0),
+                        }
+                        for node, score in similar
+                    ]
+                    logger.info(f"Found {memory_hits} similar past health checks")
+            except Exception as e:  # noqa: BLE001
+                # INTENTIONAL: Memory Graph is optional - continue health check if unavailable
+                logger.warning(f"Error querying Memory Graph: {e}")
+
+        # Build task for the crew to analyze and generate fixes
+        check_task = self._build_check_task(path, checks_run, issues, auto_fix, context)
+
+        # Execute the workflow for analysis
+        try:
+            result = await self._workflow.run(check_task, initial_state=context)
+
+            # Parse fixes from result
+            fixes = self._parse_fixes(result, issues)
+
+            # Apply auto-fixes if enabled
+            if auto_fix:
+                fixes = await self._apply_fixes(fixes, path)
+
+        except Exception as e:  # noqa: BLE001
+            # INTENTIONAL: Analysis failure shouldn't crash - return partial results
+            logger.error(f"Health check analysis failed: {e}")
+
+        # Calculate health score
+        health_score = self._calculate_health_score(issues)
+
+        # Build the report
+        duration = time.time() - start_time
+        report = HealthCheckReport(
+            target=path,
+            issues=issues,
+            fixes=fixes,
+            health_score=health_score,
+            check_duration_seconds=duration,
+            agents_used=list(self._agents.keys()),
+            memory_graph_hits=memory_hits,
+            checks_run={k: {"passed": v.get("passed", False)} for k, v in checks_run.items()},
+            metadata={
+                "auto_fix": auto_fix,
+                "framework": str(self._factory.framework.value) if self._factory else "unknown",
+                "xml_prompts": self.config.xml_prompts_enabled,
+            },
+        )
+
+        # Store check in Memory Graph
+        if self._graph and self.config.memory_graph_enabled:
+            try:
+                self._graph.add_finding(
+                    "health_check_crew",
+                    {
+                        "type": "health_check",
+                        "name": f"check:{path}",
+                        "description": f"Health score: {health_score}/100",
+                        "health_score": health_score,
+                        "issues_found": len(issues),
+                        "fixes_applied": len(report.applied_fixes),
+                    },
+                )
+                self._graph._save()
+            except Exception as e:  # noqa: BLE001
+                # INTENTIONAL: Memory Graph storage is optional - continue without it
+                logger.warning(f"Error storing check in Memory Graph: {e}")
+
+        return report
+
+    async def _run_lint_check(self, path: str) -> dict:
+        """Run ruff lint check."""
+        issues = []
+        passed = True
+
+        try:
+            result = subprocess.run(
+                ["python", "-m", "ruff", "check", path, "--output-format=json"],
+                check=False,
+                capture_output=True,
+                text=True,
+                timeout=60,
+            )
+
+            if result.returncode != 0:
+                passed = False
+
+            # Parse JSON output
+            import json
+
+            try:
+                violations = json.loads(result.stdout) if result.stdout else []
+                for v in violations[:50]:  # Limit to 50
+                    issues.append(
+                        HealthIssue(
+                            title=f"{v.get('code', 'LINT')}: {v.get('message', 'Lint error')}",
+                            description=v.get("message", ""),
+                            category=HealthCategory.LINT,
+                            severity=IssueSeverity.MEDIUM,
+                            file_path=v.get("filename"),
+                            line_number=v.get("location", {}).get("row"),
+                            rule_id=v.get("code"),
+                            tool="ruff",
+                        ),
+                    )
+            except json.JSONDecodeError:
+                pass
+
+        except (subprocess.TimeoutExpired, FileNotFoundError) as e:
+            logger.warning(f"Lint check failed: {e}")
+
+        return {"passed": passed, "issues": issues, "tool": "ruff"}
+
+    async def _run_type_check(self, path: str) -> dict:
+        """Run mypy type check."""
+        issues = []
+        passed = True
+
+        # Only scan production code packages
+        production_packages = [
+            "attune",
+            "empathy_software_plugin",
+            "empathy_healthcare_plugin",
+            "empathy_llm_toolkit",
+            "patterns",
+        ]
+
+        # Use production packages if checking current directory
+        scan_args = []
+        if path in [".", "./"]:
+            # Use package notation for packages in src/
+            for pkg in production_packages:
+                scan_args.extend(["-p", pkg])
+        else:
+            # For specific paths, use file notation
+            scan_args.append(path)
+
+        try:
+            result = subprocess.run(
+                ["python", "-m", "mypy"]
+                + scan_args
+                + ["--ignore-missing-imports", "--no-error-summary"],
+                check=False,
+                capture_output=True,
+                text=True,
+                timeout=120,
+            )
+
+            if result.returncode != 0:
+                passed = False
+
+            # Parse text output
+            for line in result.stdout.splitlines()[:50]:
+                if ": error:" in line:
+                    parts = line.split(": error:", 1)
+                    location = parts[0] if parts else ""
+                    message = parts[1].strip() if len(parts) > 1 else line
+
+                    file_path = None
+                    line_num = None
+                    if ":" in location:
+                        loc_parts = location.rsplit(":", 2)
+                        file_path = loc_parts[0]
+                        try:
+                            line_num = int(loc_parts[1]) if len(loc_parts) > 1 else None
+                        except ValueError:
+                            pass
+
+                    issues.append(
+                        HealthIssue(
+                            title=f"Type error: {message[:60]}",
+                            description=message,
+                            category=HealthCategory.TYPES,
+                            severity=IssueSeverity.MEDIUM,
+                            file_path=file_path,
+                            line_number=line_num,
+                            tool="mypy",
+                        ),
+                    )
+
+        except (subprocess.TimeoutExpired, FileNotFoundError) as e:
+            logger.warning(f"Type check failed: {e}")
+
+        return {"passed": passed, "issues": issues, "tool": "mypy"}
+
+    async def _run_test_check(self, path: str) -> dict:
+        """Run pytest test check."""
+        issues = []
+        passed = True
+
+        # Only run tests in tests/ directory for production health check
+        test_path = "tests/" if path in [".", "./"] else path
+
+        try:
+            result = subprocess.run(
+                ["python", "-m", "pytest", test_path, "--collect-only", "-q"],
+                check=False,
+                capture_output=True,
+                text=True,
+                timeout=60,
+            )
+
+            if result.returncode != 0:
+                passed = False
+
+            # Check for collection errors in stderr
+            error_output = result.stderr + result.stdout
+            for line in error_output.splitlines()[:50]:
+                if "ERROR" in line or "INTERNALERROR" in line:
+                    # Only report actual errors, not counts
+                    if "error" in line.lower() and not line.strip().startswith("="):
+                        issues.append(
+                            HealthIssue(
+                                title=f"Test error: {line[:50]}",
+                                description=line,
+                                category=HealthCategory.TESTS,
+                                severity=IssueSeverity.CRITICAL,
+                                tool="pytest",
+                            ),
+                        )
+
+        except (subprocess.TimeoutExpired, FileNotFoundError) as e:
+            logger.warning(f"Test check failed: {e}")
+
+        return {"passed": passed, "issues": issues, "tool": "pytest"}
+
+    async def _run_dep_check(self, path: str) -> dict:
+        """Run dependency security check."""
+        issues = []
+        passed = True
+
+        # Try pip-audit first
+        try:
+            result = subprocess.run(
+                ["pip-audit", "--format=json"],
+                check=False,
+                capture_output=True,
+                text=True,
+                timeout=60,
+                cwd=path if Path(path).is_dir() else ".",
+            )
+
+            if result.returncode != 0:
+                passed = False
+
+            import json
+
+            try:
+                vulns = json.loads(result.stdout) if result.stdout else []
+                # Ensure vulns is a list
+                if isinstance(vulns, dict):
+                    vulns = vulns.get("vulnerabilities", []) or list(vulns.values())
+                if not isinstance(vulns, list):
+                    vulns = []
+                for v in vulns[:20]:
+                    # Handle different vulnerability formats
+                    if not isinstance(v, dict):
+                        # Skip non-dict items or convert to basic format
+                        continue
+
+                    severity = IssueSeverity.HIGH
+                    if "critical" in str(v).lower():
+                        severity = IssueSeverity.CRITICAL
+
+                    issues.append(
+                        HealthIssue(
+                            title=f"Vulnerability in {v.get('name', 'unknown')}",
+                            description=v.get("description", str(v)),
+                            category=HealthCategory.DEPENDENCIES,
+                            severity=severity,
+                            rule_id=v.get("id"),
+                            tool="pip-audit",
+                            metadata={"fix_versions": v.get("fix_versions", [])},
+                        ),
+                    )
+            except json.JSONDecodeError:
+                pass
+
+        except (subprocess.TimeoutExpired, FileNotFoundError):
+            # pip-audit not installed, try basic pip check
+            try:
+                result = subprocess.run(
+                    ["pip", "check"],
+                    check=False,
+                    capture_output=True,
+                    text=True,
+                    timeout=30,
+                )
+                if result.returncode != 0:
+                    passed = False
+                    for line in result.stdout.splitlines()[:10]:
+                        issues.append(
+                            HealthIssue(
+                                title=f"Dependency conflict: {line[:50]}",
+                                description=line,
+                                category=HealthCategory.DEPENDENCIES,
+                                severity=IssueSeverity.MEDIUM,
+                                tool="pip",
+                            ),
+                        )
+            except (subprocess.TimeoutExpired, FileNotFoundError):
+                pass
+
+        return {"passed": passed, "issues": issues, "tool": "pip-audit/pip"}
+
+    def _build_check_task(
+        self,
+        path: str,
+        checks_run: dict,
+        issues: list[HealthIssue],
+        auto_fix: bool,
+        context: dict,
+    ) -> str:
+        """Build the check task description for the crew."""
+        issues_summary = "\n".join(
+            f"  - [{i.severity.value.upper()}] {i.category.value}: {i.title}" for i in issues[:30]
+        )
+
+        task = f"""Analyze health check results and generate fixes.
+
+Target: {path}
+Auto-fix enabled: {auto_fix}
+
+Checks Run:
+- Lint (ruff): {"PASS" if checks_run.get("lint", {}).get("passed") else "FAIL"}
+- Types (mypy): {"PASS" if checks_run.get("types", {}).get("passed") else "FAIL"}
+- Tests (pytest): {"PASS" if checks_run.get("tests", {}).get("passed") else "FAIL"}
+- Dependencies: {"PASS" if checks_run.get("deps", {}).get("passed") else "FAIL"}
+
+Issues Found ({len(issues)}):
+{issues_summary}
+
+Workflow:
+1. Health Lead coordinates analysis
+2. Lint Fixer analyzes and suggests fixes for lint issues
+3. Type Resolver suggests type annotations
+4. Test Doctor diagnoses test failures
+5. Dep Auditor suggests dependency updates
+
+For each issue, provide:
+- Root cause analysis
+- Fix recommendation (code if applicable)
+- Safety assessment (safe to auto-fix or needs review)
+- Priority (1=critical, 2=high, 3=medium, 4=low)
+
+Generate a prioritized fix plan.
+"""
+
+        if context.get("past_checks"):
+            task += f"""
+Past Health Checks Found: {len(context["past_checks"])}
+Consider patterns from past fixes.
+"""
+
+        return task
+
+    def _parse_fixes(self, result: dict, issues: list[HealthIssue]) -> list[HealthFix]:
+        """Parse fixes from workflow result."""
+        fixes = []
+
+        # Check for structured fixes in metadata
+        metadata = result.get("metadata", {})
+        if "fixes" in metadata:
+            for f in metadata["fixes"]:
+                fixes.append(
+                    HealthFix(
+                        title=f.get("title", "Fix"),
+                        description=f.get("description", ""),
+                        category=HealthCategory(f.get("category", "general")),
+                        status=FixStatus.SUGGESTED,
+                        file_path=f.get("file_path"),
+                        before_code=f.get("before_code"),
+                        after_code=f.get("after_code"),
+                        patch=f.get("patch"),
+                    ),
+                )
+            return fixes
+
+        # Generate suggested fixes based on issues
+        for issue in issues:
+            if issue.category == HealthCategory.LINT and issue.rule_id:
+                fixes.append(
+                    HealthFix(
+                        title=f"Fix {issue.rule_id}",
+                        description=f"Run: ruff check --fix --select {issue.rule_id}",
+                        category=issue.category,
+                        status=FixStatus.SUGGESTED,
+                        file_path=issue.file_path,
+                        related_issues=[issue.title],
+                    ),
+                )
+
+        return fixes
+
+    async def _apply_fixes(self, fixes: list[HealthFix], path: str) -> list[HealthFix]:
+        """Apply safe auto-fixes."""
+        updated_fixes = []
+
+        for fix in fixes:
+            if fix.category == HealthCategory.LINT and self.config.fix_safe_only:
+                # Run ruff --fix for lint issues
+                try:
+                    result = subprocess.run(
+                        ["python", "-m", "ruff", "check", path, "--fix"],
+                        check=False,
+                        capture_output=True,
+                        text=True,
+                        timeout=60,
+                    )
+                    fix.status = FixStatus.APPLIED if result.returncode == 0 else FixStatus.FAILED
+                except (subprocess.TimeoutExpired, FileNotFoundError, OSError):
+                    fix.status = FixStatus.FAILED
+            else:
+                fix.status = FixStatus.SUGGESTED
+
+            updated_fixes.append(fix)
+
+        return updated_fixes
+
+    def _calculate_health_score(self, issues: list[HealthIssue]) -> float:
+        """Calculate health score from issues.
+
+        Uses category-capped deductions to prevent one category (e.g., lint)
+        from dominating the score. This makes the score more meaningful -
+        50 lint warnings shouldn't tank a project that passes tests and has
+        no security issues.
+
+        Category caps:
+        - lint: max -15 points
+        - types: max -20 points
+        - tests: max -25 points
+        - security/dependencies: max -30 points
+        - general: max -10 points
+        """
+        if not issues:
+            return 100.0
+
+        # Per-issue deductions by severity
+        severity_deductions = {
+            IssueSeverity.CRITICAL: 15,
+            IssueSeverity.HIGH: 8,
+            IssueSeverity.MEDIUM: 2,
+            IssueSeverity.LOW: 0.5,
+            IssueSeverity.INFO: 0,
+        }
+
+        # Maximum deduction per category (prevents one area from tanking score)
+        category_caps = {
+            HealthCategory.LINT: 15,
+            HealthCategory.TYPES: 20,
+            HealthCategory.TESTS: 25,
+            HealthCategory.DEPENDENCIES: 30,
+            HealthCategory.SECURITY: 30,
+            HealthCategory.GENERAL: 10,
+        }
+
+        # Calculate deductions per category
+        category_deductions: dict[HealthCategory, float] = {}
+        for issue in issues:
+            cat = issue.category
+            deduction = severity_deductions.get(issue.severity, 0)
+            category_deductions[cat] = category_deductions.get(cat, 0) + deduction
+
+        # Apply caps per category
+        total_deduction = 0.0
+        for cat, deduction in category_deductions.items():
+            cap = category_caps.get(cat, 10)
+            total_deduction += min(deduction, cap)
+
+        return max(0.0, 100.0 - total_deduction)
+
+    @property
+    def agents(self) -> dict[str, Any]:
+        """Get the crew's agents."""
+        return self._agents
+
+    @property
+    def is_initialized(self) -> bool:
+        """Check if crew is initialized."""
+        return self._initialized
+
+    async def get_agent_stats(self) -> dict:
+        """Get statistics about crew agents."""
+        await self._initialize()
+
+        agents_dict: dict = {}
+        stats: dict = {
+            "agent_count": len(self._agents),
+            "agents": agents_dict,
+            "framework": self._factory.framework.value if self._factory else "unknown",
+            "memory_graph_enabled": self.config.memory_graph_enabled,
+            "xml_prompts_enabled": self.config.xml_prompts_enabled,
+        }
+
+        for name, agent in self._agents.items():
+            agents_dict[name] = {
+                "role": agent.config.role if hasattr(agent, "config") else "unknown",
+                "model_tier": getattr(agent.config, "model_tier", "unknown"),
+            }
+
+        return stats