aiagents4pharma 1.8.3__py3-none-any.whl → 1.10.0__py3-none-any.whl

aiagents4pharma/talk2competitors/tools/s2/search.py

@@ -0,0 +1,119 @@
+#!/usr/bin/env python3
+
+"""
+This tool is used to search for academic papers on Semantic Scholar.
+"""
+
+import logging
+from typing import Annotated, Any, Dict, Optional
+
+import pandas as pd
+import requests
+from langchain_core.messages import ToolMessage
+from langchain_core.tools import tool
+from langchain_core.tools.base import InjectedToolCallId
+from langgraph.types import Command
+from pydantic import BaseModel, Field
+
+
+class SearchInput(BaseModel):
+    """Input schema for the search papers tool."""
+
+    query: str = Field(
+        description="Search query string to find academic papers."
+        "Be specific and include relevant academic terms."
+    )
+    limit: int = Field(
+        default=2, description="Maximum number of results to return", ge=1, le=100
+    )
+    year: Optional[str] = Field(
+        default=None,
+        description="Year range in format: YYYY for specific year, "
+        "YYYY- for papers after year, -YYYY for papers before year, or YYYY:YYYY for range",
+    )
+    tool_call_id: Annotated[str, InjectedToolCallId]
+
+
+@tool(args_schema=SearchInput)
+def search_tool(
+    query: str,
+    tool_call_id: Annotated[str, InjectedToolCallId],
+    limit: int = 2,
+    year: Optional[str] = None,
+) -> Dict[str, Any]:
+    """
+    Search for academic papers on Semantic Scholar.
+
+    Args:
+        query (str): The search query string to find academic papers.
+        tool_call_id (Annotated[str, InjectedToolCallId]): The tool call ID.
+        limit (int, optional): The maximum number of results to return. Defaults to 2.
+        year (str, optional): Year range for papers.
+        Supports formats like "2024-", "-2024", "2024:2025". Defaults to None.
+
+    Returns:
+        Dict[str, Any]: The search results and related information.
+    """
+    print("Starting paper search...")
+    endpoint = "https://api.semanticscholar.org/graph/v1/paper/search"
+    params = {
+        "query": query,
+        "limit": min(limit, 100),
+        # "fields": "paperId,title,abstract,year,authors,
+        # citationCount,url,publicationTypes,openAccessPdf",
+        "fields": "paperId,title,abstract,year,authors,citationCount,url",
+    }
+
+    # Add year parameter if provided
+    if year:
+        params["year"] = year
+
+    response = requests.get(endpoint, params=params, timeout=10)
+    data = response.json()
+    papers = data.get("data", [])
+
+    # Create a dictionary to store the papers
+    filtered_papers = {
+        paper["paperId"]: {
+            "Title": paper.get("title", "N/A"),
+            "Abstract": paper.get("abstract", "N/A"),
+            "Year": paper.get("year", "N/A"),
+            "Citation Count": paper.get("citationCount", "N/A"),
+            "URL": paper.get("url", "N/A"),
+            # "Publication Type": paper.get("publicationTypes", ["N/A"])[0]
+            # if paper.get("publicationTypes")
+            # else "N/A",
+            # "Open Access PDF": paper.get("openAccessPdf", {}).get("url", "N/A")
+            # if paper.get("openAccessPdf") is not None
+            # else "N/A",
+        }
+        for paper in papers
+        if paper.get("title") and paper.get("authors")
+    }
+
+    df = pd.DataFrame(filtered_papers)
+
+    # Format papers for state update
+    papers = [
+        f"Paper ID: {paper_id}\n"
+        f"Title: {paper_data['Title']}\n"
+        f"Abstract: {paper_data['Abstract']}\n"
+        f"Year: {paper_data['Year']}\n"
+        f"Citations: {paper_data['Citation Count']}\n"
+        f"URL: {paper_data['URL']}\n"
+        # f"Publication Type: {paper_data['Publication Type']}\n"
+        # f"Open Access PDF: {paper_data['Open Access PDF']}"
+        for paper_id, paper_data in filtered_papers.items()
+    ]
+
+    markdown_table = df.to_markdown(tablefmt="grid")
+    logging.info("Search results: %s", papers)
+
+    return Command(
+        update={
+            "papers": filtered_papers,  # Now sending the dictionary directly
+            "messages": [
+                ToolMessage(content=markdown_table, tool_call_id=tool_call_id)
+            ],
+        }
+    )

aiagents4pharma/talk2competitors/tools/s2/single_paper_rec.py

@@ -0,0 +1,141 @@
+#!/usr/bin/env python3
+
+"""
+This tool is used to return recommendations for a single paper.
+"""
+
+import logging
+from typing import Annotated, Any, Dict, Optional
+
+import pandas as pd
+import requests
+from langchain_core.messages import ToolMessage
+from langchain_core.tools import tool
+from langchain_core.tools.base import InjectedToolCallId
+from langgraph.types import Command
+from pydantic import BaseModel, Field
+
+# Configure logging
+logging.basicConfig(level=logging.INFO)
+logger = logging.getLogger(__name__)
+
+
+class SinglePaperRecInput(BaseModel):
+    """Input schema for single paper recommendation tool."""
+
+    paper_id: str = Field(
+        description="Semantic Scholar Paper ID to get recommendations for (40-character string)"
+    )
+    limit: int = Field(
+        default=2,
+        description="Maximum number of recommendations to return",
+        ge=1,
+        le=500,
+    )
+    year: Optional[str] = Field(
+        default=None,
+        description="Year range in format: YYYY for specific year, "
+        "YYYY- for papers after year, -YYYY for papers before year, or YYYY:YYYY for range",
+    )
+    tool_call_id: Annotated[str, InjectedToolCallId]
+    model_config = {"arbitrary_types_allowed": True}
+
+
+@tool(args_schema=SinglePaperRecInput)
+def get_single_paper_recommendations(
+    paper_id: str,
+    tool_call_id: Annotated[str, InjectedToolCallId],
+    limit: int = 2,
+    year: Optional[str] = None,
+) -> Dict[str, Any]:
+    """
+    Get paper recommendations based on a single paper.
+
+    Args:
+        paper_id (str): The Semantic Scholar Paper ID to get recommendations for.
+        tool_call_id (Annotated[str, InjectedToolCallId]): The tool call ID.
+        limit (int, optional): The maximum number of recommendations to return. Defaults to 2.
+        year (str, optional): Year range for papers.
+        Supports formats like "2024-", "-2024", "2024:2025". Defaults to None.
+
+    Returns:
+        Dict[str, Any]: The recommendations and related information.
+    """
+    logger.info("Starting single paper recommendations search.")
+
+    endpoint = (
+        f"https://api.semanticscholar.org/recommendations/v1/papers/forpaper/{paper_id}"
+    )
+    params = {
+        "limit": min(limit, 500),  # Max 500 per API docs
+        "fields": "paperId,title,abstract,year,authors,citationCount,url",
+        "from": "all-cs",  # Using all-cs pool as specified in docs
+    }
+
+    # Add year parameter if provided
+    if year:
+        params["year"] = year
+
+    response = requests.get(endpoint, params=params, timeout=10)
+    data = response.json()
+    papers = data.get("data", [])
+    response = requests.get(endpoint, params=params, timeout=10)
+    # print(f"API Response Status: {response.status_code}")
+    logging.info(
+        "API Response Status for recommendations of paper %s: %s",
+        paper_id,
+        response.status_code,
+    )
+    # print(f"Request params: {params}")
+    logging.info("Request params: %s", params)
+
+    data = response.json()
+    recommendations = data.get("recommendedPapers", [])
+
+    # Extract paper ID and title from recommendations
+    filtered_papers = {
+        paper["paperId"]: {
+            "Title": paper.get("title", "N/A"),
+            "Abstract": paper.get("abstract", "N/A"),
+            "Year": paper.get("year", "N/A"),
+            "Citation Count": paper.get("citationCount", "N/A"),
+            "URL": paper.get("url", "N/A"),
+            # "Publication Type": paper.get("publicationTypes", ["N/A"])[0]
+            # if paper.get("publicationTypes")
+            # else "N/A",
+            # "Open Access PDF": paper.get("openAccessPdf", {}).get("url", "N/A")
+            # if paper.get("openAccessPdf") is not None
+            # else "N/A",
+        }
+        for paper in recommendations
+        if paper.get("title") and paper.get("authors")
+    }
+
+    # Create a DataFrame for pretty printing
+    df = pd.DataFrame(filtered_papers)
+
+    # Format papers for state update
+    papers = [
+        f"Paper ID: {paper_id}\n"
+        f"Title: {paper_data['Title']}\n"
+        f"Abstract: {paper_data['Abstract']}\n"
+        f"Year: {paper_data['Year']}\n"
+        f"Citations: {paper_data['Citation Count']}\n"
+        f"URL: {paper_data['URL']}\n"
+        # f"Publication Type: {paper_data['Publication Type']}\n"
+        # f"Open Access PDF: {paper_data['Open Access PDF']}"
+        for paper_id, paper_data in filtered_papers.items()
+    ]
+
+    # Convert DataFrame to markdown table
+    markdown_table = df.to_markdown(tablefmt="grid")
+    logging.info("Search results: %s", papers)
+
+    return Command(
+        update={
+            "papers": filtered_papers,  # Now sending the dictionary directly
+            "messages": [
+                ToolMessage(content=markdown_table, tool_call_id=tool_call_id)
+            ],
+        }
+    )

{aiagents4pharma-1.8.3.dist-info → aiagents4pharma-1.10.0.dist-info}/METADATA

@@ -1,11 +1,11 @@
 Metadata-Version: 2.2
 Name: aiagents4pharma
-Version: 1.8.3
+Version: 1.10.0
 Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
-Requires-Python: >=3.10
+Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: copasi_basico==0.78
@@ -48,6 +48,9 @@ Requires-Dist: streamlit-feedback
 [![Talk2Cells](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests_talk2cells.yml/badge.svg)](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests_talk2cells.yml)
 [![Talk2KnowledgeGraphs](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests_talk2knowledgegraphs.yml/badge.svg)](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests_talk2knowledgegraphs.yml)
 [![Talk2Competitors](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests_talk2competitors.yml/badge.svg)](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests_talk2competitors.yml)
+![GitHub Release](https://img.shields.io/github/v/release/VirtualPatientEngine/AIAgents4Pharma)
+![Python Version from PEP 621 TOML](https://img.shields.io/python/required-version-toml?tomlFilePath=https%3A%2F%2Fraw.githubusercontent.com%2FVirtualPatientEngine%2FAIAgents4Pharma%2Frefs%2Fheads%2Fmain%2Fpyproject.toml)
+
 
 <h1 align="center" style="border-bottom: none;">🤖 AIAgents4Pharma</h1>
 
@@ -56,9 +59,9 @@ Welcome to **AIAgents4Pharma** – an open-source project by [Team VPE](https://
 Our toolkit currently consists of three intelligent agents, each designed to simplify and enhance access to specialized data in biology:
 
 - **Talk2BioModels**: Engage directly with mathematical models in systems biology.
-- **Talk2Cells** *(Work in progress)*: Query and analyze sequencing data with ease.
-- **Talk2KnowledgeGraphs** *(Work in progress)*: Access and explore complex biological knowledge graphs for insightful data connections.
-- **Talk2Competitors** *(Coming soon)*: Get recommendations for articles related to your choice. Download, query, and write/retrieve them to your reference manager (currently supporting Zotero).
+- **Talk2Cells** _(Work in progress)_: Query and analyze sequencing data with ease.
+- **Talk2KnowledgeGraphs** _(Work in progress)_: Access and explore complex biological knowledge graphs for insightful data connections.
+- **Talk2Competitors** _(Coming soon)_: Get recommendations for articles related to your choice. Download, query, and write/retrieve them to your reference manager (currently supporting Zotero).
 
 ---
 
@@ -72,15 +75,15 @@ Our toolkit currently consists of three intelligent agents, each designed to sim
 - Adjust parameters within the model to simulate different conditions.
 - Query simulation results.
 
-### 2. Talk2Cells *(Work in Progress)*
+### 2. Talk2Cells _(Work in Progress)_
 
 **Talk2Cells** is being developed to provide direct access to and analysis of sequencing data, such as RNA-Seq or DNA-Seq, using natural language.
 
-### 3. Talk2KnowledgeGraphs *(Work in Progress)*
+### 3. Talk2KnowledgeGraphs _(Work in Progress)_
 
 **Talk2KnowledgeGraphs** is an agent designed to enable interaction with biological knowledge graphs (KGs). KGs integrate vast amounts of structured biological data into a format that highlights relationships between entities, such as proteins, genes, and diseases.
 
-### 4. Talk2KnowledgeGraphs *(Coming soon)*
+### 4. Talk2Competitors _(Coming soon)_
 
 ## Getting Started
 
@@ -91,48 +94,60 @@ Our toolkit currently consists of three intelligent agents, each designed to sim
 - Required libraries specified in `requirements.txt`
 
 ### Installation
+
 #### Option 1: PyPI
-   ```bash
-   pip install aiagents4pharma
-   ```
+
+```bash
+pip install aiagents4pharma
+```
 
 Check out the tutorials on each agent for detailed instrcutions.
 
 #### Option 2: git
+
 1. **Clone the repository:**
+
    ```bash
    git clone https://github.com/VirtualPatientEngine/AIAgents4Pharma
    cd AIAgents4Pharma
    ```
 
 2. **Install dependencies:**
+
    ```bash
    pip install .
    ```
 
 3. **Initialize OPENAI_API_KEY**
+
    ```bash
-   export OPENAI_API_KEY = ....
+   export OPENAI_API_KEY=....
    ```
 
 4. **[Optional] Set up login credentials**
+
    ```bash
    vi .streamlit/secrets.toml
    ```
+
    and enter
+
    ```
    password='XXX'
    ```
-   Please note that the passowrd will be same for all the users.
+
+   Please note that the passoword will be same for all the users.
 
 5. **[Optional] Initialize LANGSMITH_API_KEY**
+
    ```bash
    export LANGCHAIN_TRACING_V2=true
    export LANGCHAIN_API_KEY=<your-api-key>
    ```
-   Please note that this will create a new tracing project in your Langsmith 
-   account with the name `<user_name>@<uuid>`, where `user_name` is the name 
-   you provided in the previous step. If you skip the previous step, it will 
+
+   Please note that this will create a new tracing project in your Langsmith
+   account with the name `<user_name>@<uuid>`, where `user_name` is the name
+   you provided in the previous step. If you skip the previous step, it will
    default to `default`. <uuid> will be the 128 bit unique ID created for the
    session.
 
@@ -164,6 +179,7 @@ We welcome contributions to AIAgents4Pharma! Here’s how you can help:
 5. **Open a pull request**
 
 ### Current Needs
+
 - **Beta testers** for Talk2BioModels.
 - **Developers** with experience in natural language processing, bioinformatics, or knowledge graphs for contributions to AIAgents4Pharma.
 
@@ -174,19 +190,22 @@ Check out our [CONTRIBUTING.md](CONTRIBUTING.md) for more information.
 ## Roadmap
 
 ### Completed
+
 - **Talk2BioModels**: Initial release with core capabilities for interacting with systems biology models.
 
 ### Planned
+
 - **User Interface**: Interactive web UI for all agents.
 - **Talk2Cells**: Integration of sequencing data analysis tools.
 - **Talk2KnowledgeGraphs**: Interface for biological knowledge graph interaction.
-- **Talk2Competitors**
+- **Talk2Competitors**: Interface for exploring articles
 
-We’re excited to bring AIAgents4Pharma to the bioinformatics and pharmaceutical research community. Together, let’s make data-driven biological research more accessible and insightful. 
+We’re excited to bring AIAgents4Pharma to the bioinformatics and pharmaceutical research community. Together, let’s make data-driven biological research more accessible and insightful.
 
 **Get Started** with AIAgents4Pharma today and transform the way you interact with biological data.
 
 ---
 
 ## Feedback
+
 Questions/Bug reports/Feature requests/Comments/Suggestions? We welcome all. Please use the `Isssues` tab 😀

{aiagents4pharma-1.8.3.dist-info → aiagents4pharma-1.10.0.dist-info}/RECORD

@@ -1,29 +1,29 @@
-aiagents4pharma/__init__.py,sha256=X-Mpbf4sfjMvoxiTTl4qFgCxrWZgtVgRjnjX6gbUtCg,173
+aiagents4pharma/__init__.py,sha256=5muWWIg89VHPybfxonO_5xOMJPasKNsGdQRhozDaEmk,177
 aiagents4pharma/configs/__init__.py,sha256=hNkSrXw1Ix1HhkGn_aaidr2coBYySfM0Hm_pMeRcX7k,76
 aiagents4pharma/configs/config.yaml,sha256=8y8uG6Dzx4-9jyb6hZ8r4lOJz5gA_sQhCiSCgXL5l7k,65
 aiagents4pharma/configs/talk2biomodels/__init__.py,sha256=5ah__-8XyRblwT0U1ByRigNjt_GyCheu7zce4aM-eZE,68
 aiagents4pharma/configs/talk2biomodels/agents/__init__.py,sha256=_ZoG8snICK2bidWtc2KOGs738LWg9_r66V9mOMnEb-E,71
 aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/__init__.py,sha256=-fAORvyFmG2iSvFOFDixmt9OTQRR58y89uhhu2EgbA8,46
-aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/default.yaml,sha256=-IwTmcZFlgUzxxHgcaR9jmbVKCP3IFEHtqzAD4pek6s,200
-aiagents4pharma/talk2biomodels/__init__.py,sha256=9MuyHb5KTf5ufeyq7fu5xoLEwVT688DFOWuKuzdWG9o,140
+aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/default.yaml,sha256=yD7qZCneaM-JE5PdZjDmDoTRUdsFrzeCKZsBx1b-f20,293
+aiagents4pharma/talk2biomodels/__init__.py,sha256=qUw3qXrENqSCLIKSLy_qtNPwPDTb1wdZ8fZispcHb3g,141
 aiagents4pharma/talk2biomodels/agents/__init__.py,sha256=sn5-fREjMdEvb-OUan3iOqrgYGjplNx3J8hYOaW0Po8,128
 aiagents4pharma/talk2biomodels/agents/t2b_agent.py,sha256=nVWxHR-QMZDqDwxvDga_CvLo7LHP5cWCDl6lXCMcRO0,3264
 aiagents4pharma/talk2biomodels/models/__init__.py,sha256=5fTHHm3PVloYPNKXbgNlcPgv3-u28ZquxGydFYDfhJA,122
 aiagents4pharma/talk2biomodels/models/basico_model.py,sha256=js7ORLwbJPaIsko5oRToMMCh4l8LsN292OIvFzTfvRg,4946
 aiagents4pharma/talk2biomodels/models/sys_bio_model.py,sha256=ylpPba2SA8kl68q3k1kJbiUdRYplPHykyslTQLDZ19I,1995
 aiagents4pharma/talk2biomodels/states/__init__.py,sha256=YLg1-N0D9qyRRLRqwqfLCLAqZYDtMVZTfI8Y0b_4tbA,139
-aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py,sha256=cneAsNgtzDoL3_gkC4gf7h69BfBOY7rASpYWz4I8jjI,761
+aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py,sha256=iob7q5Kpy6aWDLCiFsp4NNVYYXNdDU3vU50PmxyvBsU,792
 aiagents4pharma/talk2biomodels/tests/__init__.py,sha256=Jbw5tJxSrjGoaK5IX3pJWDCNzhrVQ10lkYq2oQ_KQD8,45
 aiagents4pharma/talk2biomodels/tests/test_basico_model.py,sha256=uqhbojcA4RRTDRUAF9B9DzKCo3OOIOWMDK8IViG0gsM,2038
-aiagents4pharma/talk2biomodels/tests/test_langgraph.py,sha256=z3bS_LE2s9kba2fFM5SWQy1uIalQBbCnGJuakQjnKTQ,7365
+aiagents4pharma/talk2biomodels/tests/test_langgraph.py,sha256=GyqsUpcWgjuRb15DpGvLg-FZ8g3_cf0TwVcaCPp_vO0,9456
 aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py,sha256=nA6bRT16627mw8qzrv7cHM9AByHb9F0kxAuwOpE-avA,1961
 aiagents4pharma/talk2biomodels/tools/__init__.py,sha256=8hAT6z1OO8N9HRylh6fwoqyjYlGdpkngkElBNqH40Zo,237
-aiagents4pharma/talk2biomodels/tools/ask_question.py,sha256=UEdT46DIFZHlAOF4cNX4_s7VjHvbbiGpNmEY2-XW2iA,2655
-aiagents4pharma/talk2biomodels/tools/custom_plotter.py,sha256=BfLSivWqtRVZDeqD7RP5sgZP6B9rET47IWdNrA3gmIE,3825
-aiagents4pharma/talk2biomodels/tools/get_modelinfo.py,sha256=czxjRa9jvjTow-POGU5wSV8_lwfknAezBnzCFA0gQ8E,5189
+aiagents4pharma/talk2biomodels/tools/ask_question.py,sha256=uxCQ4ON8--D0ACPvT14t6x_aqm9LP6woBA4GM7bPXc4,3061
+aiagents4pharma/talk2biomodels/tools/custom_plotter.py,sha256=HWwKTX3o4dk0GcRVTO2hPrFSu98mtJ4TKC_hbHXOe1c,4018
+aiagents4pharma/talk2biomodels/tools/get_modelinfo.py,sha256=68KmeEpgvgaDQM9airOWVy4fGT33rG10RlXhps5W6C0,5279
 aiagents4pharma/talk2biomodels/tools/load_biomodel.py,sha256=pyVzLQoMnuJYEwsjeOlqcUrbU1F1Z-pNlgkhFaoKpy0,689
 aiagents4pharma/talk2biomodels/tools/search_models.py,sha256=Iq2ddofOOfZYtAurCISq3bAq5rbwB3l_rL1lgEFyFCI,2653
-aiagents4pharma/talk2biomodels/tools/simulate_model.py,sha256=hBRrSLVGcaT157FCe8ajVKJZ2fi9CJhGeniGLaZJ-KE,6251
+aiagents4pharma/talk2biomodels/tools/simulate_model.py,sha256=1HVoI5SkktvpOmTnAG8hxrhpoxpg_he-bb5ZJ_UllI4,6833
 aiagents4pharma/talk2cells/__init__.py,sha256=zmOP5RAhabgKIQP-W4P4qKME2tG3fhAXM3MeO5_H8kE,120
 aiagents4pharma/talk2cells/agents/__init__.py,sha256=38nK2a_lEFRjO3qD6Fo9a3983ZCYat6hmJKWY61y2Mo,128
 aiagents4pharma/talk2cells/agents/scp_agent.py,sha256=gDMfhUNWHa_XWOqm1Ql6yLAdI_7bnIk5sRYn43H2sYk,3090
@@ -34,7 +34,22 @@ aiagents4pharma/talk2cells/tools/__init__.py,sha256=38nK2a_lEFRjO3qD6Fo9a3983ZCY
 aiagents4pharma/talk2cells/tools/scp_agent/__init__.py,sha256=s7g0lyH1lMD9pcWHLPtwRJRvzmTh2II7DrxyLulpjmQ,163
 aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py,sha256=6q59gh_NQaiOU2rn55A3sIIFKlXi4SK3iKgySvUDrtQ,600
 aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py,sha256=MLe-twtFnOu-P8P9diYq7jvHBHbWFRRCZLcfpUzqPMg,2806
-aiagents4pharma/talk2competitors/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+aiagents4pharma/talk2competitors/__init__.py,sha256=haaikzND3c0Euqq86ndA4fl9q42aOop5rYG_8Zh1D-o,119
+aiagents4pharma/talk2competitors/agents/__init__.py,sha256=ykszlVGxz3egLHZAttlNoTPxIrnQJZYva_ssR8fwIFk,117
+aiagents4pharma/talk2competitors/agents/main_agent.py,sha256=UoHCpZd-HoeG0B6_gAF1cEP2OqMvrTuGe7MZDwL_u1U,3878
+aiagents4pharma/talk2competitors/agents/s2_agent.py,sha256=eTrhc4ZPvWOUWMHNYxK0WltsZedZUnAWNu-TeUa-ruk,2501
+aiagents4pharma/talk2competitors/config/__init__.py,sha256=HyM6paOpKZ5_tZnyVheSAFmxjT6Mb3PxvWKfP0rz-dE,113
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+aiagents4pharma/talk2competitors/tools/__init__.py,sha256=YudBDRwaEzDnAcpxGZvEOfyh5-6xd51CTvTKTkywgXw,68
+aiagents4pharma/talk2competitors/tools/s2/__init__.py,sha256=9RQH3efTj6qkXk0ICKSc7Mzpkitt4gRGsQ1pGPrrREU,181
+aiagents4pharma/talk2competitors/tools/s2/display_results.py,sha256=B8JJGohi1Eyx8C3MhO_SiyQP3R6hPyUKJOAzcHmq3FU,584
+aiagents4pharma/talk2competitors/tools/s2/multi_paper_rec.py,sha256=FYLt47DAk6WOKfEk1Gj9zVvJGNyxA283PCp8IKW9U5M,4262
+aiagents4pharma/talk2competitors/tools/s2/search.py,sha256=pppjrQv5-8ep4fnqgTSBNgnbSnQsVIcNrRrH0p2TP1o,4025
+aiagents4pharma/talk2competitors/tools/s2/single_paper_rec.py,sha256=dAfUQxI7T5eu0eDxK8VAl7-JH0Wnw24CVkOQqwj-hXc,4810
 aiagents4pharma/talk2knowledgegraphs/__init__.py,sha256=SW7Ys2A4eXyFtizNPdSw91SHOPVUBGBsrCQ7TqwSUL0,91
 aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py,sha256=L3gPuHskSegmtXskVrLIYr7FXe_ibKgJ2GGr1_Wok6k,173
 aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py,sha256=QlzDXmXREoa9MA6-GwzqRjdzndQeGBAF11Td6NFk_9Y,23426
@@ -55,8 +70,8 @@ aiagents4pharma/talk2knowledgegraphs/utils/embeddings/__init__.py,sha256=xRb0x7S
 aiagents4pharma/talk2knowledgegraphs/utils/embeddings/embeddings.py,sha256=1nGznrAj-xT0xuSMBGz2dOujJ7M_IwSR84njxtxsy9A,2523
 aiagents4pharma/talk2knowledgegraphs/utils/embeddings/huggingface.py,sha256=2vi_elf6EgzfagFAO5QnL3a_aXZyN7B1EBziu44MTfM,3806
 aiagents4pharma/talk2knowledgegraphs/utils/embeddings/sentence_transformer.py,sha256=36iKlisOpMtGR5xfTAlSHXWvPqVC_Jbezod8kbBBMVg,2136
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-aiagents4pharma-1.8.3.dist-info/RECORD,,
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