accusleepy 0.4.4__py3-none-any.whl → 0.5.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (15) hide show
  1. accusleepy/bouts.py +142 -0
  2. accusleepy/classification.py +2 -2
  3. accusleepy/constants.py +2 -0
  4. accusleepy/fileio.py +0 -53
  5. accusleepy/gui/images/primary_window.png +0 -0
  6. accusleepy/gui/main.py +84 -64
  7. accusleepy/gui/manual_scoring.py +76 -81
  8. accusleepy/gui/mplwidget.py +15 -10
  9. accusleepy/gui/primary_window.py +1 -0
  10. accusleepy/models.py +57 -7
  11. accusleepy/multitaper.py +9 -7
  12. accusleepy/signal_processing.py +5 -143
  13. {accusleepy-0.4.4.dist-info → accusleepy-0.5.0.dist-info}/METADATA +29 -19
  14. {accusleepy-0.4.4.dist-info → accusleepy-0.5.0.dist-info}/RECORD +15 -14
  15. {accusleepy-0.4.4.dist-info → accusleepy-0.5.0.dist-info}/WHEEL +0 -0
{accusleepy-0.4.4.dist-info → accusleepy-0.5.0.dist-info}/METADATA RENAMED
@@ -1,16 +1,16 @@
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  Metadata-Version: 2.3
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  Name: accusleepy
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- Version: 0.4.4
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+ Version: 0.5.0
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  Summary: Python implementation of AccuSleep
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  License: GPL-3.0-only
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  Author: Zeke Barger
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  Author-email: zekebarger@gmail.com
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- Requires-Python: >=3.10,<3.13
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+ Requires-Python: >=3.11,<3.14
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  Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
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  Classifier: Programming Language :: Python :: 3
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- Classifier: Programming Language :: Python :: 3.10
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: 3.13
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  Requires-Dist: fastparquet (>=2024.11.0,<2025.0.0)
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  Requires-Dist: joblib (>=1.4.2,<2.0.0)
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  Requires-Dist: matplotlib (>=3.10.1,<4.0.0)
@@ -18,7 +18,7 @@ Requires-Dist: numpy (>=2.2.4,<3.0.0)
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  Requires-Dist: pandas (>=2.2.3,<3.0.0)
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  Requires-Dist: pillow (>=11.1.0,<12.0.0)
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  Requires-Dist: pre-commit (>=4.2.0,<5.0.0)
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- Requires-Dist: pyside6 (>=6.7.1,<6.8.0)
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+ Requires-Dist: pyside6 (>=6.9.0,<7.0.0)
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  Requires-Dist: scipy (>=1.15.2,<2.0.0)
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  Requires-Dist: toml (>=0.10.2,<0.11.0)
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  Requires-Dist: torch (>=2.6.0,<3.0.0)
@@ -30,9 +30,17 @@ Description-Content-Type: text/markdown
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  ## Description
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- AccuSleePy is a python implementation of AccuSleep--a set of graphical user interfaces for scoring rodent
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- sleep using EEG and EMG recordings. It offers several improvements over the original MATLAB version
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- and is the only version that will be actively maintained.
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+ AccuSleePy is set of graphical user interfaces for scoring rodent sleep
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+ using EEG and EMG recordings.
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+ It offers the following improvements over the MATLAB version (AccuSleep):
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+
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+ - Up to 10 brain states can be configured through the user interface
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+ - Classification models can be trained through the user interface
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+ - Model files contain useful metadata (brain state configuration,
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+ epoch length, number of epochs)
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+ - Models optimized for real-time scoring can be trained
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+ - Lists of recordings can be imported and exported for repeatable batch processing
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+ - Undo/redo functionality in the manual scoring interface
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  If you use AccuSleep in your research, please cite our
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  [publication](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0224642):
@@ -43,28 +51,20 @@ The data and models associated with AccuSleep are available at https://osf.io/py
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  Please contact zekebarger (at) gmail (dot) com with any questions or comments about the software.
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- ## What's new
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-
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- AccuSleePy offers the following improvements over the MATLAB version:
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-
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- - Up to 10 brain states can be configured through the user interface
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- - Models can be trained through the user interface
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- - Model files contain useful metadata (brain state configuration,
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- epoch length, number of epochs)
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- - Models optimized for real-time scoring can be trained
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- - Lists of recordings can be imported and exported for repeatable batch processing
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- - Undo/redo functionality in the manual scoring interface
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  ## Installation
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  - (recommended) create a new virtual environment (using
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  [venv](https://docs.python.org/3/library/venv.html),
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  [conda](https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html),
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- etc.) using python >=3.10,<3.13
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+ etc.) with python >=3.11,<3.14
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  - (optional) if you have a CUDA device and want to speed up model training, [install PyTorch](https://pytorch.org/)
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  - `pip install accusleepy`
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  - (optional) download a classification model from https://osf.io/py5eb/ under /python_format/models/
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+ Note that upgrading or reinstalling the package will overwrite any changes
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+ to the [config file](accusleepy/config.json).
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+
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  ## Usage
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  `python -m accusleepy` will open the primary interface.
@@ -73,7 +73,17 @@ etc.) using python >=3.10,<3.13
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  [Guide to the manual scoring interface](accusleepy/gui/text/manual_scoring_guide.md)
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+ ## Changelog
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+
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+ - 0.5.0: Performance improvements
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+ - 0.4.5: Added support for python 3.13, **removed support for python 3.10.**
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+ - 0.4.4: Performance improvements
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+ - 0.4.3: Improved unit tests and user manuals
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+ - 0.4.0: Improved visuals and user manuals
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+ - 0.1.0-0.3.1: Early development versions
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+
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  ## Screenshots
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  Primary interface
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  ![AccuSleePy primary interface](accusleepy/gui/images/primary_window.png)
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{accusleepy-0.4.4.dist-info → accusleepy-0.5.0.dist-info}/RECORD RENAMED
@@ -1,10 +1,11 @@
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  accusleepy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  accusleepy/__main__.py,sha256=dKzl2N2Hg9lD264CWYNxThRyDKzWwyMwHRXmJxOmMis,104
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+ accusleepy/bouts.py,sha256=F_y6DxnpKFfImYb7vCZluZ2eD5I_33gZXmRM8mvebsg,5679
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  accusleepy/brain_state_set.py,sha256=fRkrArHLIbEKimub804yt_mUXoyfsjJEfiJnTjeCMkY,3233
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- accusleepy/classification.py,sha256=xrmPyMHlzYh0QfNCID1PRIYEIyNkWduOi7g1Bdb6xfg,8573
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+ accusleepy/classification.py,sha256=czRGcDYN28QK5Nsahy6y2C162OgbO1nhjJxWZT9AvWc,8579
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  accusleepy/config.json,sha256=F76WRLarMEW38BBMPwFlQ_d7Dur-ptqYmW8BxqnQF4A,464
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- accusleepy/constants.py,sha256=PnsPANggyIfMfd6OCR-kNztFOTybUEhMnPeibu5_eEU,1280
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- accusleepy/fileio.py,sha256=S5pf_hE-btJPMbrTplKLaQTULSJQoOJ-56LBH79Uz3I,6383
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+ accusleepy/constants.py,sha256=mb6Tjzat-tWOHdz2I1mqW7NtDzDKcy3rVjeqSdOQ2qE,1381
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+ accusleepy/fileio.py,sha256=qJfnAnGou337z9_ngBpqsyhCawKazh2DpQdneFZMaMg,4547
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  accusleepy/gui/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  accusleepy/gui/icons/brightness_down.png,sha256=PLT1fb83RHIhSRuU7MMMx0G7oJAY7o9wUcnqM8veZfM,12432
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  accusleepy/gui/icons/brightness_up.png,sha256=64GnUqgPvN5xZ6Um3wOzwqvUmdAWYZT6eFmWpBsHyks,12989
@@ -17,13 +18,13 @@ accusleepy/gui/icons/save.png,sha256=J3EA8iU1BqLYRSsrq_OdoZlqrv2yfL7oV54DklTy_DI
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  accusleepy/gui/icons/up_arrow.png,sha256=V9yF9t1WgjPaUu-mF1YGe_DfaRHg2dUpR_sUVVcvVvY,3329
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  accusleepy/gui/icons/zoom_in.png,sha256=MFWnKZp7Rvh4bLPq4Cqo4sB_jQYedUUtT8-ZO8tNYyc,13589
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  accusleepy/gui/icons/zoom_out.png,sha256=IB8Jecb3i0U4qjWRR46ridjLpvLCSe7PozBaLqQqYSw,13055
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- accusleepy/gui/images/primary_window.png,sha256=Taf9llcO_cVI76SImgcugTppxu7upLPQFv5YN2OC8NA,597005
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+ accusleepy/gui/images/primary_window.png,sha256=-JHTb7bvRS-mUoSl9XRNmhBjQHHiwwuO80jwblp-IO8,598790
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  accusleepy/gui/images/viewer_window.png,sha256=gKwIXkgsl1rTMfmMeMwNyjEAUL5I6FXk9-hpMR92qTI,970630
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  accusleepy/gui/images/viewer_window_annotated.png,sha256=M5NmoWDHRLS334Rp8SsfOPUUXzPltH1p7aB0BrISgQU,261481
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- accusleepy/gui/main.py,sha256=QLtxVvBz81CjDeBddJZNDCLd207j9WJga1n45nlsxWI,54384
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- accusleepy/gui/manual_scoring.py,sha256=Sy4vwMmMLY_SreXUyxd0t-at2F-1pHkvvz1UGIbzVic,40496
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- accusleepy/gui/mplwidget.py,sha256=f9O3u_96whQGUwpi3o_QGc7yjiETX5vE0oj3ePXTJWE,12279
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- accusleepy/gui/primary_window.py,sha256=RXpDvcb7zy8Ea4Da1VhMG1T6GC54KW3vyGjqqQJN45k,104582
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+ accusleepy/gui/main.py,sha256=VW4dYk4a2NPA3zl9omBkxaVRJDAvECTLYHsE0uIlnyo,54502
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+ accusleepy/gui/manual_scoring.py,sha256=f4y_33kFzZ6krdtfkUDJqQ4LRhn7aC1Fwm6nwus4x1I,39853
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+ accusleepy/gui/mplwidget.py,sha256=Jy3hdkTayo8KzKx1AJ7jS0n_w-CCLlAYqUK7uSEzIBY,12389
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+ accusleepy/gui/primary_window.py,sha256=gk-IRcsjw4Sf7b1mQbf5RhZiPprv2BtvxGfYjAjrUmc,104583
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  accusleepy/gui/primary_window.ui,sha256=09k4xFcjgOL9mlhFlg6mXCc_tgj4_FY9CZ3H03e3z3A,147074
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  accusleepy/gui/resources.qrc,sha256=ByNEmJqr0YbKBqoZGvONZtjyNYr4ST4enO6TEdYSqWg,802
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  accusleepy/gui/resources_rc.py,sha256=Z2e34h30U4snJjnYdZVV9B6yjATKxxfvgTRt5uXtQdo,329727
@@ -32,9 +33,9 @@ accusleepy/gui/text/main_guide.md,sha256=VS6A5_CzQOBwIotNgEA_X0KHKfMT4lEK43Ki_Dk
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  accusleepy/gui/text/manual_scoring_guide.md,sha256=ow_RMSjFy05NupEDSCuJtu-V65-BPnIkrZqtssFoZCQ,999
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  accusleepy/gui/viewer_window.py,sha256=5PkbuYMXUegH1CExCoqSGDZ9GeJqCCUz0-3WWkM8Vfc,24049
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  accusleepy/gui/viewer_window.ui,sha256=D1LwUFR-kZ_GWGZFFtXvGJdFWghLrOWZTblQeLQt9kI,30525
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- accusleepy/models.py,sha256=Muapsw088AUHqRIbW97Rkbv0oiwCtQvO9tEoBCC-MYg,1476
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- accusleepy/multitaper.py,sha256=V6MJDk0OSWhg2MFhrnt9dvYrHiNsk2T7IxAA7paZVyE,25549
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- accusleepy/signal_processing.py,sha256=-aXnywfp1LBsk3DcbIMmZlgv3f8j6sZ6js0bizZId0o,21718
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- accusleepy-0.4.4.dist-info/METADATA,sha256=-ljW9uyRze3PQhDr85hTMrKzOWveDCALUH2cPs2sT_E,3653
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- accusleepy-0.4.4.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
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- accusleepy-0.4.4.dist-info/RECORD,,
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+ accusleepy/models.py,sha256=IJcMy102p8RndidqZ9HrL-eIGLOjQqc1hwebZHRvl5Q,3390
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+ accusleepy/multitaper.py,sha256=D5-iglwkFBRciL5tKSNcunMtcq0rM3zHwRHUVPgem1U,25679
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+ accusleepy/signal_processing.py,sha256=dxq0Nq9ae8ze5hX8vX7LXBqz1IJ3SoBsNQYmNSY5n2E,16023
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+ accusleepy-0.5.0.dist-info/METADATA,sha256=F1AZtdxlgo70PPCJucnVhYyUa922FXsjMzS942wfqSs,3909
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+ accusleepy-0.5.0.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
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+ accusleepy-0.5.0.dist-info/RECORD,,