accusleepy 0.4.4__py3-none-any.whl → 0.5.0__py3-none-any.whl

accusleepy/gui/manual_scoring.py

@@ -12,7 +12,24 @@ from types import SimpleNamespace
 
 import matplotlib.pyplot as plt
 import numpy as np
-from PySide6 import QtCore, QtGui, QtWidgets
+from PySide6.QtCore import (
+    QKeyCombination,
+    QRect,
+    Qt,
+    QUrl,
+)
+from PySide6.QtGui import (
+    QCloseEvent,
+    QKeySequence,
+    QShortcut,
+)
+from PySide6.QtWidgets import (
+    QDialog,
+    QMessageBox,
+    QTextBrowser,
+    QVBoxLayout,
+    QWidget,
+)
 
 from accusleepy.constants import UNDEFINED_LABEL
 from accusleepy.fileio import load_config, save_labels
@@ -73,7 +90,7 @@ class StateChange:
     epoch: int  # first epoch affected
 
 
-class ManualScoringWindow(QtWidgets.QDialog):
+class ManualScoringWindow(QDialog):
     """AccuSleePy manual scoring GUI"""
 
     def __init__(
@@ -191,33 +208,25 @@ class ManualScoringWindow(QtWidgets.QDialog):
         self.update_lower_figure()
 
         # user input: keyboard shortcuts
-        keypress_right = QtGui.QShortcut(
-            QtGui.QKeySequence(QtCore.Qt.Key.Key_Right), self
-        )
+        keypress_right = QShortcut(QKeySequence(Qt.Key.Key_Right), self)
         keypress_right.activated.connect(partial(self.shift_epoch, DIRECTION_RIGHT))
 
-        keypress_left = QtGui.QShortcut(
-            QtGui.QKeySequence(QtCore.Qt.Key.Key_Left), self
-        )
+        keypress_left = QShortcut(QKeySequence(Qt.Key.Key_Left), self)
         keypress_left.activated.connect(partial(self.shift_epoch, DIRECTION_LEFT))
 
         keypress_zoom_in_x = list()
-        for zoom_key in [QtCore.Qt.Key.Key_Plus, QtCore.Qt.Key.Key_Equal]:
-            keypress_zoom_in_x.append(
-                QtGui.QShortcut(QtGui.QKeySequence(zoom_key), self)
-            )
+        for zoom_key in [Qt.Key.Key_Plus, Qt.Key.Key_Equal]:
+            keypress_zoom_in_x.append(QShortcut(QKeySequence(zoom_key), self))
             keypress_zoom_in_x[-1].activated.connect(partial(self.zoom_x, ZOOM_IN))
 
-        keypress_zoom_out_x = QtGui.QShortcut(
-            QtGui.QKeySequence(QtCore.Qt.Key.Key_Minus), self
-        )
+        keypress_zoom_out_x = QShortcut(QKeySequence(Qt.Key.Key_Minus), self)
         keypress_zoom_out_x.activated.connect(partial(self.zoom_x, ZOOM_OUT))
 
         keypress_modify_label = list()
         for brain_state in self.brain_state_set.brain_states:
             keypress_modify_label.append(
-                QtGui.QShortcut(
-                    QtGui.QKeySequence(QtCore.Qt.Key[f"Key_{brain_state.digit}"]),
+                QShortcut(
+                    QKeySequence(Qt.Key[f"Key_{brain_state.digit}"]),
                     self,
                 )
             )
@@ -225,25 +234,19 @@ class ManualScoringWindow(QtWidgets.QDialog):
                 partial(self.modify_current_epoch_label, brain_state.digit)
             )
 
-        keypress_delete_label = QtGui.QShortcut(
-            QtGui.QKeySequence(QtCore.Qt.Key.Key_Backspace), self
-        )
+        keypress_delete_label = QShortcut(QKeySequence(Qt.Key.Key_Backspace), self)
         keypress_delete_label.activated.connect(
             partial(self.modify_current_epoch_label, UNDEFINED_LABEL)
         )
 
-        keypress_quit = QtGui.QShortcut(
-            QtGui.QKeySequence(
-                QtCore.QKeyCombination(QtCore.Qt.Modifier.CTRL, QtCore.Qt.Key.Key_W)
-            ),
+        keypress_quit = QShortcut(
+            QKeySequence(QKeyCombination(Qt.Modifier.CTRL, Qt.Key.Key_W)),
             self,
         )
         keypress_quit.activated.connect(self.close)
 
-        keypress_save = QtGui.QShortcut(
-            QtGui.QKeySequence(
-                QtCore.QKeyCombination(QtCore.Qt.Modifier.CTRL, QtCore.Qt.Key.Key_S)
-            ),
+        keypress_save = QShortcut(
+            QKeySequence(QKeyCombination(Qt.Modifier.CTRL, Qt.Key.Key_S)),
             self,
         )
         keypress_save.activated.connect(self.save)
@@ -251,11 +254,11 @@ class ManualScoringWindow(QtWidgets.QDialog):
         keypress_roi = list()
         for brain_state in self.brain_state_set.brain_states:
             keypress_roi.append(
-                QtGui.QShortcut(
-                    QtGui.QKeySequence(
-                        QtCore.QKeyCombination(
-                            QtCore.Qt.Modifier.SHIFT,
-                            QtCore.Qt.Key[f"Key_{brain_state.digit}"],
+                QShortcut(
+                    QKeySequence(
+                        QKeyCombination(
+                            Qt.Modifier.SHIFT,
+                            Qt.Key[f"Key_{brain_state.digit}"],
                         )
                     ),
                     self,
@@ -265,11 +268,11 @@ class ManualScoringWindow(QtWidgets.QDialog):
                 partial(self.enter_label_roi_mode, brain_state.digit)
             )
         keypress_roi.append(
-            QtGui.QShortcut(
-                QtGui.QKeySequence(
-                    QtCore.QKeyCombination(
-                        QtCore.Qt.Modifier.SHIFT,
-                        QtCore.Qt.Key.Key_Backspace,
+            QShortcut(
+                QKeySequence(
+                    QKeyCombination(
+                        Qt.Modifier.SHIFT,
+                        Qt.Key.Key_Backspace,
                     )
                 ),
                 self,
@@ -279,22 +282,18 @@ class ManualScoringWindow(QtWidgets.QDialog):
             partial(self.enter_label_roi_mode, UNDEFINED_LABEL)
         )
 
-        keypress_esc = QtGui.QShortcut(
-            QtGui.QKeySequence(QtCore.Qt.Key.Key_Escape), self
-        )
+        keypress_esc = QShortcut(QKeySequence(Qt.Key.Key_Escape), self)
         keypress_esc.activated.connect(self.exit_label_roi_mode)
 
-        keypress_space = QtGui.QShortcut(
-            QtGui.QKeySequence(QtCore.Qt.Key.Key_Space), self
-        )
+        keypress_space = QShortcut(QKeySequence(Qt.Key.Key_Space), self)
         keypress_space.activated.connect(
             partial(self.jump_to_next_state, DIRECTION_RIGHT, DIFFERENT_STATE)
         )
-        keypress_shift_right = QtGui.QShortcut(
-            QtGui.QKeySequence(
-                QtCore.QKeyCombination(
-                    QtCore.Qt.Modifier.SHIFT,
-                    QtCore.Qt.Key.Key_Right,
+        keypress_shift_right = QShortcut(
+            QKeySequence(
+                QKeyCombination(
+                    Qt.Modifier.SHIFT,
+                    Qt.Key.Key_Right,
                 )
             ),
             self,
@@ -302,11 +301,11 @@ class ManualScoringWindow(QtWidgets.QDialog):
         keypress_shift_right.activated.connect(
             partial(self.jump_to_next_state, DIRECTION_RIGHT, DIFFERENT_STATE)
         )
-        keypress_shift_left = QtGui.QShortcut(
-            QtGui.QKeySequence(
-                QtCore.QKeyCombination(
-                    QtCore.Qt.Modifier.SHIFT,
-                    QtCore.Qt.Key.Key_Left,
+        keypress_shift_left = QShortcut(
+            QKeySequence(
+                QKeyCombination(
+                    Qt.Modifier.SHIFT,
+                    Qt.Key.Key_Left,
                 )
             ),
             self,
@@ -314,11 +313,11 @@ class ManualScoringWindow(QtWidgets.QDialog):
         keypress_shift_left.activated.connect(
             partial(self.jump_to_next_state, DIRECTION_LEFT, DIFFERENT_STATE)
         )
-        keypress_ctrl_right = QtGui.QShortcut(
-            QtGui.QKeySequence(
-                QtCore.QKeyCombination(
-                    QtCore.Qt.Modifier.CTRL,
-                    QtCore.Qt.Key.Key_Right,
+        keypress_ctrl_right = QShortcut(
+            QKeySequence(
+                QKeyCombination(
+                    Qt.Modifier.CTRL,
+                    Qt.Key.Key_Right,
                 )
             ),
             self,
@@ -326,11 +325,11 @@ class ManualScoringWindow(QtWidgets.QDialog):
         keypress_ctrl_right.activated.connect(
             partial(self.jump_to_next_state, DIRECTION_RIGHT, UNDEFINED_STATE)
         )
-        keypress_ctrl_left = QtGui.QShortcut(
-            QtGui.QKeySequence(
-                QtCore.QKeyCombination(
-                    QtCore.Qt.Modifier.CTRL,
-                    QtCore.Qt.Key.Key_Left,
+        keypress_ctrl_left = QShortcut(
+            QKeySequence(
+                QKeyCombination(
+                    Qt.Modifier.CTRL,
+                    Qt.Key.Key_Left,
                 )
             ),
             self,
@@ -339,17 +338,13 @@ class ManualScoringWindow(QtWidgets.QDialog):
             partial(self.jump_to_next_state, DIRECTION_LEFT, UNDEFINED_STATE)
         )
 
-        keypress_undo = QtGui.QShortcut(
-            QtGui.QKeySequence(
-                QtCore.QKeyCombination(QtCore.Qt.Modifier.CTRL, QtCore.Qt.Key.Key_Z)
-            ),
+        keypress_undo = QShortcut(
+            QKeySequence(QKeyCombination(Qt.Modifier.CTRL, Qt.Key.Key_Z)),
             self,
         )
         keypress_undo.activated.connect(self.undo)
-        keypress_redo = QtGui.QShortcut(
-            QtGui.QKeySequence(
-                QtCore.QKeyCombination(QtCore.Qt.Modifier.CTRL, QtCore.Qt.Key.Key_Y)
-            ),
+        keypress_redo = QShortcut(
+            QKeySequence(QKeyCombination(Qt.Modifier.CTRL, Qt.Key.Key_Y)),
             self,
         )
         keypress_redo.activated.connect(self.redo)
@@ -483,34 +478,34 @@ class ManualScoringWindow(QtWidgets.QDialog):
         )
         self.click_to_jump(simulated_click)
 
-    def closeEvent(self, event: QtGui.QCloseEvent) -> None:
+    def closeEvent(self, event: QCloseEvent) -> None:
         """Check if there are unsaved changes before closing"""
         if not all(self.labels == self.last_saved_labels):
-            result = QtWidgets.QMessageBox.question(
+            result = QMessageBox.question(
                 self,
                 "Unsaved changes",
                 "You have unsaved changes. Really quit?",
-                QtWidgets.QMessageBox.Yes | QtWidgets.QMessageBox.No,
+                QMessageBox.Yes | QMessageBox.No,
             )
-            if result == QtWidgets.QMessageBox.Yes:
+            if result == QMessageBox.Yes:
                 event.accept()
             else:
                 event.ignore()
 
     def show_user_manual(self) -> None:
         """Show a popup window with the user manual"""
-        self.popup = QtWidgets.QWidget()
-        self.popup_vlayout = QtWidgets.QVBoxLayout(self.popup)
-        self.guide_textbox = QtWidgets.QTextBrowser(self.popup)
+        self.popup = QWidget()
+        self.popup_vlayout = QVBoxLayout(self.popup)
+        self.guide_textbox = QTextBrowser(self.popup)
         self.popup_vlayout.addWidget(self.guide_textbox)
 
-        url = QtCore.QUrl.fromLocalFile(
+        url = QUrl.fromLocalFile(
             os.path.join(os.path.dirname(os.path.abspath(__file__)), USER_MANUAL_FILE)
         )
         self.guide_textbox.setSource(url)
         self.guide_textbox.setOpenLinks(False)
 
-        self.popup.setGeometry(QtCore.QRect(100, 100, 830, 600))
+        self.popup.setGeometry(QRect(100, 100, 830, 600))
         self.popup.show()
 
     def jump_to_next_state(self, direction: str, target: str) -> None:

accusleepy/gui/mplwidget.py

@@ -339,18 +339,23 @@ def resample_x_ticks(x_ticks: np.array) -> np.array:
     """Choose a subset of x_ticks to display
 
     The x-axis can get crowded if there are too many timestamps shown.
-    This function resamples the x-axis ticks by a factor of either
-    MAX_LOWER_X_TICK_N or MAX_LOWER_X_TICK_N - 2, whichever is closer
-    to being a factor of the number of ticks.
+    This function finds a subset of evenly spaced x-axis ticks that
+    includes the one at the beginning of the central epoch.
 
     :param x_ticks: full set of x_ticks
     :return: smaller subset of x_ticks
     """
-    # add one since the tick at the rightmost edge isn't shown
-    n_ticks = len(x_ticks) + 1
-    if n_ticks < MAX_LOWER_X_TICK_N:
+    if len(x_ticks) <= MAX_LOWER_X_TICK_N:
         return x_ticks
-    elif n_ticks % MAX_LOWER_X_TICK_N < n_ticks % (MAX_LOWER_X_TICK_N - 2):
-        return x_ticks[:: int(n_ticks / MAX_LOWER_X_TICK_N)]
-    else:
-        return x_ticks[:: int(n_ticks / (MAX_LOWER_X_TICK_N - 2))]
+
+    # number of ticks to the left of the central epoch
+    # this will always be an integer
+    nl = round((len(x_ticks) - 1) / 2)
+
+    # search for even tick spacings that include the central epoch
+    # if necessary, skip the leftmost tick
+    for offset in [0, 1]:
+        if (nl - offset) % 3 == 0:
+            return x_ticks[offset :: round((nl - offset) / 3)]
+        elif (nl - offset) % 2 == 0:
+            return x_ticks[offset :: round((nl - offset) / 2)]

accusleepy/gui/primary_window.py

@@ -30,6 +30,7 @@ from PySide6.QtWidgets import (
     QVBoxLayout,
     QWidget,
 )
+
 import accusleepy.gui.resources_rc  # noqa F401
 
 

accusleepy/models.py

@@ -1,8 +1,9 @@
 import numpy as np
-import torch
-import torch.nn.functional as F
-from torch import nn
+from torch import device, flatten, nn
+from torch import load as torch_load
+from torch import save as torch_save
 
+from accusleepy.brain_state_set import BRAIN_STATES_KEY, BrainStateSet
 from accusleepy.constants import (
     DOWNSAMPLING_START_FREQ,
     EMG_COPIES,
@@ -41,8 +42,57 @@ class SSANN(nn.Module):
 
     def forward(self, x):
         x = x.float()
-        x = self.pool(F.relu(self.conv1_bn(self.conv1(x))))
-        x = self.pool(F.relu(self.conv2_bn(self.conv2(x))))
-        x = self.pool(F.relu(self.conv3_bn(self.conv3(x))))
-        x = torch.flatten(x, 1)  # flatten all dimensions except batch
+        x = self.pool(nn.functional.relu(self.conv1_bn(self.conv1(x))))
+        x = self.pool(nn.functional.relu(self.conv2_bn(self.conv2(x))))
+        x = self.pool(nn.functional.relu(self.conv3_bn(self.conv3(x))))
+        x = flatten(x, 1)  # flatten all dimensions except batch
         return self.fc1(x)
+
+
+def save_model(
+    model: SSANN,
+    filename: str,
+    epoch_length: int | float,
+    epochs_per_img: int,
+    model_type: str,
+    brain_state_set: BrainStateSet,
+) -> None:
+    """Save classification model and its metadata
+
+    :param model: classification model
+    :param epoch_length: epoch length used when training the model
+    :param epochs_per_img: number of epochs in each model input
+    :param model_type: default or real-time
+    :param brain_state_set: set of brain state options
+    :param filename: filename
+    """
+    state_dict = model.state_dict()
+    state_dict.update({"epoch_length": epoch_length})
+    state_dict.update({"epochs_per_img": epochs_per_img})
+    state_dict.update({"model_type": model_type})
+    state_dict.update(
+        {BRAIN_STATES_KEY: brain_state_set.to_output_dict()[BRAIN_STATES_KEY]}
+    )
+
+    torch_save(state_dict, filename)
+
+
+def load_model(filename: str) -> tuple[SSANN, int | float, int, str, dict]:
+    """Load classification model and its metadata
+
+    :param filename: filename
+    :return: model, epoch length used when training the model,
+        number of epochs in each model input, model type
+        (default or real-time), set of brain state options
+        used when training the model
+    """
+    state_dict = torch_load(filename, weights_only=True, map_location=device("cpu"))
+    epoch_length = state_dict.pop("epoch_length")
+    epochs_per_img = state_dict.pop("epochs_per_img")
+    model_type = state_dict.pop("model_type")
+    brain_states = state_dict.pop(BRAIN_STATES_KEY)
+    n_classes = len([b for b in brain_states if b["is_scored"]])
+
+    model = SSANN(n_classes=n_classes)
+    model.load_state_dict(state_dict)
+    return model, epoch_length, epochs_per_img, model_type, brain_states

accusleepy/multitaper.py

@@ -15,8 +15,9 @@ import warnings
 
 import numpy as np
 from joblib import Parallel, cpu_count, delayed
-from scipy.signal import detrend
-from scipy.signal.windows import dpss
+
+# from scipy.signal import detrend # unused by AccuSleePy
+# from scipy.signal.windows import dpss # lazily loaded later
 
 
 # MULTITAPER SPECTROGRAM #
@@ -28,14 +29,14 @@ def spectrogram(
     num_tapers=None,
     window_params=None,
     min_nfft=0,
-    detrend_opt="linear",
+    detrend_opt="off",  # this functionality is disabled
     multiprocess=False,
     n_jobs=None,
     weighting="unity",
     plot_on=False,
     return_fig=False,
     clim_scale=True,
-    verbose=True,
+    verbose=False,
     xyflip=False,
     ax=None,
 ):
@@ -121,6 +122,7 @@ def spectrogram(
 
     __________________________________________________________________________________________________________________
     """
+    from scipy.signal.windows import dpss
 
     #  Process user input
     [
@@ -618,9 +620,9 @@ def calc_mts_segment(
         ret.fill(np.nan)
         return ret
 
-    # Option to detrend data to remove low frequency DC component
-    if detrend_opt != "off":
-        data_segment = detrend(data_segment, type=detrend_opt)
+    # # Option to detrend data to remove low frequency DC component
+    # if detrend_opt != "off":
+    #     data_segment = detrend(data_segment, type=detrend_opt)
 
     # Multiply data by dpss tapers (STEP 2)
     tapered_data = np.multiply(np.asmatrix(data_segment).T, np.asmatrix(dpss_tapers.T))

accusleepy/signal_processing.py

@@ -1,17 +1,14 @@
 import os
-import re
 import warnings
-from dataclasses import dataclass
-from operator import attrgetter
 
 import numpy as np
 import pandas as pd
 from PIL import Image
-from scipy.signal import butter, filtfilt
 from tqdm import trange
 
 from accusleepy.brain_state_set import BrainStateSet
 from accusleepy.constants import (
+    ANNOTATIONS_FILENAME,
     DEFAULT_MODEL_TYPE,
     DOWNSAMPLING_START_FREQ,
     EMG_COPIES,
@@ -23,13 +20,13 @@ from accusleepy.constants import (
 from accusleepy.fileio import Recording, load_labels, load_recording
 from accusleepy.multitaper import spectrogram
 
+# note: scipy is lazily imported
+
 # clip mixture z-scores above and below this level
 # in the matlab implementation, I used 4.5
 ABS_MAX_Z_SCORE = 3.5
 # upper frequency limit when generating EEG spectrograms
 SPECTROGRAM_UPPER_FREQ = 64
-# filename used to store info about training image datasets
-ANNOTATIONS_FILENAME = "annotations.csv"
 
 
 def resample(
@@ -186,6 +183,8 @@ def get_emg_power(
     :param epoch_length: epoch length, in seconds
     :return: EMG "power" for each epoch
     """
+    from scipy.signal import butter, filtfilt
+
     # filter parameters
     order = 8
     bp_lower = 20
@@ -450,140 +449,3 @@ def create_training_images(
     )
 
     return failed_recordings
-
-
-@dataclass
-class Bout:
-    """Stores information about a brain state bout"""
-
-    length: int  # length, in number of epochs
-    start_index: int  # index where bout starts
-    end_index: int  # index where bout ends
-    surrounding_state: int  # brain state on both sides of the bout
-
-
-def find_last_adjacent_bout(sorted_bouts: list[Bout], bout_index: int) -> int:
-    """Find index of last consecutive same-length bout
-
-     When running the post-processing step that enforces a minimum duration
-     for brain state bouts, there is a special case when bouts below the
-     duration threshold occur consecutively. This function performs a
-     recursive search for the index of a bout at the end of such a sequence.
-     When initially called, bout_index will always be 0. If, for example, the
-     first three bouts in the list are consecutive, the function will return 2.
-
-    :param sorted_bouts: list of brain state bouts, sorted by start time
-    :param bout_index: index of the bout in question
-    :return: index of the last consecutive same-length bout
-    """
-    # if we're at the end of the bout list, stop
-    if bout_index == len(sorted_bouts) - 1:
-        return bout_index
-
-    # if there is an adjacent bout
-    if sorted_bouts[bout_index].end_index == sorted_bouts[bout_index + 1].start_index:
-        # look for more adjacent bouts using that one as a starting point
-        return find_last_adjacent_bout(sorted_bouts, bout_index + 1)
-    else:
-        return bout_index
-
-
-def enforce_min_bout_length(
-    labels: np.array, epoch_length: int | float, min_bout_length: int | float
-) -> np.array:
-    """Ensure brain state bouts meet the min length requirement
-
-    As a post-processing step for sleep scoring, we can require that any
-    bout (continuous period) of a brain state have a minimum duration.
-    This function sets any bout shorter than the minimum duration to the
-    surrounding brain state (if the states on the left and right sides
-    are the same). In the case where there are consecutive short bouts,
-    it either creates a transition at the midpoint or removes all short
-    bouts, depending on whether the number is even or odd. For example:
-    ...AAABABAAA...  -> ...AAAAAAAAA...
-    ...AAABABABBB... -> ...AAAAABBBBB...
-
-    :param labels: brain state labels (digits in the 0-9 range)
-    :param epoch_length: epoch length, in seconds
-    :param min_bout_length: minimum bout length, in seconds
-    :return: updated brain state labels
-    """
-    # if recording is very short, don't change anything
-    if labels.size < 3:
-        return labels
-
-    if epoch_length == min_bout_length:
-        return labels
-
-    # get minimum number of epochs in a bout
-    min_epochs = int(np.ceil(min_bout_length / epoch_length))
-    # get set of states in the labels
-    brain_states = set(labels.tolist())
-
-    while True:  # so true
-        # convert labels to a string for regex search
-        # There is probably a regex that can find all patterns like ab+a
-        # without consuming each "a" but I haven't found it :(
-        label_string = "".join(labels.astype(str))
-
-        bouts = list()
-
-        for state in brain_states:
-            for other_state in brain_states:
-                if state == other_state:
-                    continue
-                # get start and end indices of each bout
-                expression = (
-                    f"(?<={other_state}){state}{{1,{min_epochs - 1}}}(?={other_state})"
-                )
-                matches = re.finditer(expression, label_string)
-                spans = [match.span() for match in matches]
-
-                # if some bouts were found
-                for span in spans:
-                    bouts.append(
-                        Bout(
-                            length=span[1] - span[0],
-                            start_index=span[0],
-                            end_index=span[1],
-                            surrounding_state=other_state,
-                        )
-                    )
-
-        if len(bouts) == 0:
-            break
-
-        # only keep the shortest bouts
-        min_length_in_list = np.min([bout.length for bout in bouts])
-        bouts = [i for i in bouts if i.length == min_length_in_list]
-        # sort by start index
-        sorted_bouts = sorted(bouts, key=attrgetter("start_index"))
-
-        while len(sorted_bouts) > 0:
-            # get row index of latest adjacent bout (of same length)
-            last_adjacent_bout_index = find_last_adjacent_bout(sorted_bouts, 0)
-            # if there's an even number of adjacent bouts
-            if (last_adjacent_bout_index + 1) % 2 == 0:
-                midpoint = sorted_bouts[
-                    round((last_adjacent_bout_index + 1) / 2)
-                ].start_index
-                labels[sorted_bouts[0].start_index : midpoint] = sorted_bouts[
-                    0
-                ].surrounding_state
-                labels[midpoint : sorted_bouts[last_adjacent_bout_index].end_index] = (
-                    sorted_bouts[last_adjacent_bout_index].surrounding_state
-                )
-            else:
-                labels[
-                    sorted_bouts[0].start_index : sorted_bouts[
-                        last_adjacent_bout_index
-                    ].end_index
-                ] = sorted_bouts[0].surrounding_state
-
-            # delete the bouts we just fixed
-            if last_adjacent_bout_index == len(sorted_bouts) - 1:
-                sorted_bouts = []
-            else:
-                sorted_bouts = sorted_bouts[(last_adjacent_bout_index + 1) :]
-
-    return labels