MEDfl 0.2.1__py3-none-any.whl → 2.0.1__py3-none-any.whl

alembic/env.py

@@ -1,61 +1,61 @@
-from logging.config import fileConfig
-import logging
-from sqlalchemy import engine_from_config, create_engine
-from sqlalchemy import pool
-import sys
-import os
-from alembic import context
-
-sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
-from scripts.base import my_eng
-
-# this is the Alembic Config object, which provides
-# access to the values within the .ini file in use.
-config = context.config
-
-# Interpret the config file for Python logging.
-# This line sets up loggers basically.
-fileConfig(config.config_file_name)
-
-# add your model's MetaData object here
-# for 'autogenerate' support
-# from myapp import mymodel
-# target_metadata = mymodel.Base.metadata
-target_metadata = None
-
-# other values from the config, defined by the needs of env.py,
-# can be acquired:
-# my_important_option = config.get_main_option("my_important_option")
-# ... etc.
-def configure_logger(name):
-    # This is the standard logging configuration
-    logging.config.fileConfig(
-        'alembic_logging.ini',  # Path to your logging configuration file
-        defaults={
-            'logfilename': 'alembic.log',  # Log file name
-        },
-        disable_existing_loggers=False,
-    )
-
-    return logging.getLogger(name)
-
-
-
-def run_migrations_offline():
-    """Run migrations in 'offline' mode."""
-    pass
-
-def run_migrations_online():
-    """Run migrations in 'online' mode."""
-    pass
-
-if context.is_offline_mode():
-    run_migrations_offline()
-else:
-    run_migrations_online()
-
-
-if context.is_offline_mode():
-    run_migrations_offline()
-else:
-    run_migrations_online()
+from logging.config import fileConfig
+import logging
+from sqlalchemy import engine_from_config, create_engine
+from sqlalchemy import pool
+import sys
+import os
+from alembic import context
+
+sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
+from scripts.base import my_eng
+
+# this is the Alembic Config object, which provides
+# access to the values within the .ini file in use.
+config = context.config
+
+# Interpret the config file for Python logging.
+# This line sets up loggers basically.
+fileConfig(config.config_file_name)
+
+# add your model's MetaData object here
+# for 'autogenerate' support
+# from myapp import mymodel
+# target_metadata = mymodel.Base.metadata
+target_metadata = None
+
+# other values from the config, defined by the needs of env.py,
+# can be acquired:
+# my_important_option = config.get_main_option("my_important_option")
+# ... etc.
+def configure_logger(name):
+    # This is the standard logging configuration
+    logging.config.fileConfig(
+        'alembic_logging.ini',  # Path to your logging configuration file
+        defaults={
+            'logfilename': 'alembic.log',  # Log file name
+        },
+        disable_existing_loggers=False,
+    )
+
+    return logging.getLogger(name)
+
+
+
+def run_migrations_offline():
+    """Run migrations in 'offline' mode."""
+    pass
+
+def run_migrations_online():
+    """Run migrations in 'online' mode."""
+    pass
+
+if context.is_offline_mode():
+    run_migrations_offline()
+else:
+    run_migrations_online()
+
+
+if context.is_offline_mode():
+    run_migrations_offline()
+else:
+    run_migrations_online()

{MEDfl-0.2.1.dist-info → medfl-2.0.1.dist-info}/METADATA

@@ -1,108 +1,120 @@
-Metadata-Version: 2.1
-Name: MEDfl
-Version: 0.2.1
-Summary: Python Open-source package for simulating federated learning and differential privacy
-Home-page: https://github.com/MEDomics-UdeS/MEDfl
-Author: MEDomics consortium
-Author-email: medomics.info@gmail.com
-Project-URL: Documentation, https://
-Project-URL: Github, https://github.com/MEDomics-UdeS/MEDfl
-Keywords: federated learning differential privacy medical research
-Classifier: Development Status :: 3 - Alpha
-Classifier: Intended Audience :: Developers
-Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Requires-Python: >=3.8,<3.11
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: flwr ~=1.7.0
-Requires-Dist: matplotlib ~=3.6.3
-Requires-Dist: numpy ~=1.24.2
-Requires-Dist: opacus ~=1.3.0
-Requires-Dist: pandas ~=1.5.2
-Requires-Dist: PyYAML ~=6.0
-Requires-Dist: setuptools ~=68.0.0
-Requires-Dist: Sphinx ~=5.3.0
-Requires-Dist: SQLAlchemy ~=1.4.47
-Requires-Dist: torch ~=1.13.1
-Requires-Dist: datetime ~=5.1
-Requires-Dist: scikit-learn ~=1.1.1
-Requires-Dist: sphinx-jsonschema ==1.19.1
-Requires-Dist: sphinx-rtd-dark-mode ==1.2.4
-Requires-Dist: plotly ==5.19.0
-Requires-Dist: optuna ==3.5.0
-Requires-Dist: mysql
-Requires-Dist: mysql-connector-python
-
-# MEDfl: Federated Learning and Differential Privacy Simulation Tool for Tabular Data
-![Python Versions](https://img.shields.io/badge/python-3.9-blue)
-![Build Status](https://travis-ci.org/MEDomics-UdeS/MEDfl.svg?branch=main)
-
-![GitHub contributors](https://img.shields.io/github/contributors/scottydocs/README-template.md)
-![License: MIT](https://img.shields.io/badge/license-MIT-green)
-
-
-
-## Table of Contents
-  * [1. Introduction](#1-introduction)
-  * [2. Installation](#2-installation)
-  * [3. Documentation](#3-documentation)
-  * [4. Getting started](#4-Getting-started)
-  * [5. Acknowledgement](#5-acknowledgement)
-  * [6. Authors](#6-authors)
-
-## 1. Introduction
-This Python package is an open-source tool designed for simulating federated learning and incorporating differential privacy. It empowers researchers and developers to effortlessly create, execute, and assess federated learning pipelines while seamlessly working with various tabular datasets.
-
-
-## 2. Installation
-
-### Python installation
-The MEDfl package requires *python 3.9* or more to be run. If you don't have it installed  on your machine, check out the following link [Python](https://www.python.org/downloads/).
-It also requires MySQL database.
-
-### Package installation
-For now, you can  install the ``MEDfl``package as:
-```
-git clone https://github.com/MEDomics-UdeS/MEDfl.git
-cd MEDfl
-pip install -e .
-```
-### MySQL DB configuration
-MEDfl requires a MySQL DB connection, and this is in order to allow users to work with their own tabular datasets,  we have created a bash script to install and configure A MySQL DB with phpmyadmin monitoring system, run the following command then change your credential on the MEDfl/scripts/base.py and MEDfl/scripts/db_config.ini files
-```
-sudo bash MEDfl/scripts/setup_mysql.sh
-```
-
-### Project Base URL Update
-Please ensure to modify the `base_url` parameter in the `MEDfl/global_params.yaml` file. The `base_url` represents the path to the MEDfl project on your local machine. Update this value accordingly.
-
-## 3. Documentation
-We used sphinx to create the documentation for this project.  you can generate and host it locally by compiling the documentation source code using:
-```
-cd docs
-make clean
-make html
-```
-
-Then open it locally using:
-
-```
-cd _build/html
-python -m http.server
-```
-
-## 4. Getting started
-We have created a complete tutorial for the different functionalities of the package. It can be found here: [Tutorial](https://github.com/MEDomics-UdeS/MEDfl/blob/main/notebooks/First_Tuto.ipynb).
-
-
-## 5. Acknowledgment
-MEDfl is an open-source package that welcomes any contribution and feedback. We wish that this package could serve the growing research community in federated learning for health.
-
-## 6. Authors
-* [MEDomics-UdeS](https://www.medomics-udes.org/en/)
-* [Hithem Lamri](https://github.com/HaithemLamri)
-* [Ouael Nedjem Eddine SAHBI](https://github.com/ouaelesi)
-
+Metadata-Version: 2.4
+Name: MEDfl
+Version: 2.0.1
+Summary: Python Open-source package for simulating federated learning and differential privacy
+Home-page: https://github.com/MEDomics-UdeS/MEDfl
+Author: MEDomics consortium
+Author-email: medomics.info@gmail.com
+Project-URL: Documentation, https://
+Project-URL: Github, https://github.com/MEDomics-UdeS/MEDfl
+Keywords: federated learning differential privacy medical research
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Developers
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Requires-Python: >=3.8,<3.13
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: flwr~=1.18.0
+Requires-Dist: matplotlib~=3.6.3
+Requires-Dist: numpy~=1.26.4
+Requires-Dist: opacus~=1.5.3
+Requires-Dist: pandas~=1.5.2
+Requires-Dist: PyYAML~=6.0
+Requires-Dist: setuptools~=68.0.0
+Requires-Dist: Sphinx~=5.3.0
+Requires-Dist: SQLAlchemy~=1.4.47
+Requires-Dist: torch>=2.0.0
+Requires-Dist: datetime~=5.1
+Requires-Dist: scikit-learn~=1.6.1
+Requires-Dist: sphinx-jsonschema==1.19.1
+Requires-Dist: sphinx-rtd-dark-mode==1.2.4
+Requires-Dist: plotly==5.19.0
+Requires-Dist: optuna==3.5.0
+Requires-Dist: mysql-connector-python~=9.3.0
+Requires-Dist: seaborn~=0.13.2
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: keywords
+Dynamic: license-file
+Dynamic: project-url
+Dynamic: requires-dist
+Dynamic: requires-python
+Dynamic: summary
+
+# MEDfl: Federated Learning and Differential Privacy Simulation Tool for Tabular Data
+![Python Versions](https://img.shields.io/badge/python-3.9-blue)
+![Build Status](https://travis-ci.org/MEDomics-UdeS/MEDfl.svg?branch=main)
+
+![GitHub contributors](https://img.shields.io/github/contributors/scottydocs/README-template.md)
+![License: MIT](https://img.shields.io/badge/license-MIT-green)
+
+
+
+## Table of Contents
+  * [1. Introduction](#1-introduction)
+  * [2. Installation](#2-installation)
+  * [3. Documentation](#3-documentation)
+  * [4. Getting started](#4-Getting-started)
+  * [5. Acknowledgement](#5-acknowledgement)
+  * [6. Authors](#6-authors)
+
+## 1. Introduction
+This Python package is an open-source tool designed for simulating federated learning and incorporating differential privacy. It empowers researchers and developers to effortlessly create, execute, and assess federated learning pipelines while seamlessly working with various tabular datasets.
+
+
+## 2. Installation
+
+### Python installation
+The MEDfl package requires *python 3.9* or more to be run. If you don't have it installed  on your machine, check out the following link [Python](https://www.python.org/downloads/).
+It also requires MySQL database.
+
+### Package installation
+For now, you can  install the ``MEDfl``package as:
+```
+git clone https://github.com/MEDomics-UdeS/MEDfl.git
+cd MEDfl
+pip install -e .
+```
+### MySQL DB configuration
+MEDfl requires a MySQL DB connection, and this is in order to allow users to work with their own tabular datasets,  we have created a bash script to install and configure A MySQL DB with phpmyadmin monitoring system, run the following command then change your credential on the MEDfl/scripts/base.py and MEDfl/scripts/db_config.ini files
+```
+sudo bash MEDfl/scripts/setup_mysql.sh
+```
+
+### Project Base URL Update
+Please ensure to modify the `base_url` parameter in the `MEDfl/global_params.yaml` file. The `base_url` represents the path to the MEDfl project on your local machine. Update this value accordingly.
+
+## 3. Documentation
+We used sphinx to create the documentation for this project.  you can generate and host it locally by compiling the documentation source code using:
+```
+cd docs
+make clean
+make html
+```
+
+Then open it locally using:
+
+```
+cd _build/html
+python -m http.server
+```
+
+## 4. Getting started
+We have created a complete tutorial for the different functionalities of the package. It can be found here: [Tutorial](https://github.com/MEDomics-UdeS/MEDfl/blob/main/notebooks/First_Tuto.ipynb).
+
+
+## 5. Acknowledgment
+MEDfl is an open-source package that welcomes any contribution and feedback. We wish that this package could serve the growing research community in federated learning for health.
+
+## 6. Authors
+* [MEDomics-UdeS](https://www.medomics-udes.org/en/)
+* [Hithem Lamri](https://github.com/HaithemLamri)
+* [Ouael Nedjem Eddine SAHBI](https://github.com/ouaelesi)
+

medfl-2.0.1.dist-info/RECORD

@@ -0,0 +1,55 @@
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+MEDfl/LearningManager/__init__.py,sha256=IMHJVeyx5ew0U_90LNMNCd4QISzWv3XCCri7fQRvcsM,341
+MEDfl/LearningManager/client.py,sha256=9Y_Zb0yxvCxx3dVCPQ1bXS5mCKasylSBnoVj-RDN270,5933
+MEDfl/LearningManager/dynamicModal.py,sha256=q8u7xPpj_TdZnSr8kYj0Xx7Sdz-diXsKBAfVce8-qSU,10534
+MEDfl/LearningManager/federated_dataset.py,sha256=InsZ5Rys2dgqaPxVyP5G3TrJMwiCNHOoTd3tCpUwUVM,2081
+MEDfl/LearningManager/flpipeline.py,sha256=5lT2uod5EqnkRQ04cgm0gYyZz0djumfIYipCrzX1fdo,7111
+MEDfl/LearningManager/model.py,sha256=vp8FIMxBdz3FTF5wJaea2IO_WGeANLZgBxTKVe3gW3Q,7456
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+MEDfl/LearningManager/params_optimiser.py,sha256=8e0gCt4imwQHlNSJ3A2EAuc3wSr6yfSI6JDghohfmZQ,17618
+MEDfl/LearningManager/plot.py,sha256=A6Z8wC8J-H-OmWBPKqwK5eiTB9vzOBGMaFv1SaNA9Js,7698
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+MEDfl/NetManager/database_connector.py,sha256=G8DAsD_pAIK1U67x3Q8gmSJGW7iJyxQ_NE5lWpT-P0Q,1474
+MEDfl/NetManager/dataset.py,sha256=HTV0jrJ4Qlhl2aSJzdFU1lkxGBKtmJ390eBpwfKf_4o,2777
+MEDfl/NetManager/flsetup.py,sha256=CVu_TIU7l3G6DDnwtY6JURbhIZk7gKC3unqWnU-YtlM,11434
+MEDfl/NetManager/net_helper.py,sha256=tyfxmpbleSdfPfo2ezKT0VOvZu660v9nhBuHCpl8pG4,6812
+MEDfl/NetManager/net_manager_queries.py,sha256=j-CLQPjtTLyZuFPhIcwJStD7L7xtZpkmkhe_h3pDuTs,4086
+MEDfl/NetManager/network.py,sha256=5t705fzWc-BRg-QPAbAcDv5ckDGzsPwj_Q5V0iTgkx0,6829
+MEDfl/NetManager/node.py,sha256=t90QuYZ8M1X_AG1bwTta0CnlOuodqkmpVda2K7NOgHc,6542
+MEDfl/scripts/__init__.py,sha256=Pq1weevsPaU7MRMHfBYeyT0EOFeWLeVM6Y1DVz6jw1A,48
+MEDfl/scripts/base.py,sha256=QrmG7gkiPYkAy-5tXxJgJmOSLGAKeIVH6i0jq7G9xnA,752
+MEDfl/scripts/create_db.py,sha256=MnFtZkTueRZ-3qXPNX4JsXjOKj-4mlkxoRhSFdRcvJw,3817
+Medfl/__init__.py,sha256=-BV6VpkX931dhU_qLqRJyhhRP9ftIrlHBvTgQVC-jK0,79
+Medfl/LearningManager/__init__.py,sha256=IMHJVeyx5ew0U_90LNMNCd4QISzWv3XCCri7fQRvcsM,341
+Medfl/LearningManager/client.py,sha256=9Y_Zb0yxvCxx3dVCPQ1bXS5mCKasylSBnoVj-RDN270,5933
+Medfl/LearningManager/dynamicModal.py,sha256=q8u7xPpj_TdZnSr8kYj0Xx7Sdz-diXsKBAfVce8-qSU,10534
+Medfl/LearningManager/federated_dataset.py,sha256=InsZ5Rys2dgqaPxVyP5G3TrJMwiCNHOoTd3tCpUwUVM,2081
+Medfl/LearningManager/flpipeline.py,sha256=5lT2uod5EqnkRQ04cgm0gYyZz0djumfIYipCrzX1fdo,7111
+Medfl/LearningManager/model.py,sha256=vp8FIMxBdz3FTF5wJaea2IO_WGeANLZgBxTKVe3gW3Q,7456
+Medfl/LearningManager/params.yaml,sha256=_yAdYBtxNqKRWIhs_XebG_w1NGyq4-3NzVwWb8xiU5o,436
+Medfl/LearningManager/params_optimiser.py,sha256=8e0gCt4imwQHlNSJ3A2EAuc3wSr6yfSI6JDghohfmZQ,17618
+Medfl/LearningManager/plot.py,sha256=A6Z8wC8J-H-OmWBPKqwK5eiTB9vzOBGMaFv1SaNA9Js,7698
+Medfl/LearningManager/server.py,sha256=oTgW3K1UT6m4SQBk23FIf23km_BDq9vvjeC6OgY8DNw,7077
+Medfl/LearningManager/strategy.py,sha256=BHXpwmt7jx07y45YLUs8FZry2gYQbpiV4vNbHhsksQ4,3435
+Medfl/LearningManager/utils.py,sha256=B4RULJp-puJr724O6teI0PxnUyPV8NG-uPC6jqaiDKI,9605
+Medfl/NetManager/__init__.py,sha256=OpgsIiBg7UA6Bfnu_kqGfEPxU8JfpPxSFU98TOeDTP0,273
+Medfl/NetManager/database_connector.py,sha256=Yh3GxI0NmbftM7YUkqQBjsXAe3i1ucF9q5OyR9DOhDQ,1473
+Medfl/NetManager/dataset.py,sha256=HTV0jrJ4Qlhl2aSJzdFU1lkxGBKtmJ390eBpwfKf_4o,2777
+Medfl/NetManager/flsetup.py,sha256=CVu_TIU7l3G6DDnwtY6JURbhIZk7gKC3unqWnU-YtlM,11434
+Medfl/NetManager/net_helper.py,sha256=tyfxmpbleSdfPfo2ezKT0VOvZu660v9nhBuHCpl8pG4,6812
+Medfl/NetManager/net_manager_queries.py,sha256=j-CLQPjtTLyZuFPhIcwJStD7L7xtZpkmkhe_h3pDuTs,4086
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+Medfl/NetManager/node.py,sha256=t90QuYZ8M1X_AG1bwTta0CnlOuodqkmpVda2K7NOgHc,6542
+Medfl/scripts/__init__.py,sha256=Pq1weevsPaU7MRMHfBYeyT0EOFeWLeVM6Y1DVz6jw1A,48
+Medfl/scripts/base.py,sha256=QrmG7gkiPYkAy-5tXxJgJmOSLGAKeIVH6i0jq7G9xnA,752
+Medfl/scripts/create_db.py,sha256=MnFtZkTueRZ-3qXPNX4JsXjOKj-4mlkxoRhSFdRcvJw,3817
+alembic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+alembic/env.py,sha256=-aSZ6SlJeK1ZeqHgM-54hOi9LhJRFP0SZGjut-JnY-4,1588
+medfl-2.0.1.dist-info/licenses/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+medfl-2.0.1.dist-info/METADATA,sha256=zHjfr88Etr5-fG8de55QinubpfHZBoSl15_iF-peN64,4579
+medfl-2.0.1.dist-info/WHEEL,sha256=lTU6B6eIfYoiQJTZNc-fyaR6BpL6ehTzU3xGYxn2n8k,91
+medfl-2.0.1.dist-info/top_level.txt,sha256=dIL9X8HOFuaVSzpg40DVveDPrymWRoShHtspH7kkjdI,14
+medfl-2.0.1.dist-info/RECORD,,

{MEDfl-0.2.1.dist-info → medfl-2.0.1.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.43.0)
+Generator: setuptools (78.1.1)
 Root-Is-Purelib: true
 Tag: py3-none-any