EvoScientist 0.0.1.dev4__py3-none-any.whl → 0.1.0rc1__py3-none-any.whl

evoscientist-0.0.1.dev4.dist-info/METADATA

@@ -1,367 +0,0 @@
-Metadata-Version: 2.4
-Name: EvoScientist
-Version: 0.0.1.dev4
-Summary: EvoScientist: Towards Self-Evolving AI Scientists for End-to-End Scientific Discovery
-Author: Xi Zhang
-Maintainer: Xi Zhang
-License-Expression: MIT
-Project-URL: Homepage, https://github.com/EvoScientist/EvoScientist
-Project-URL: Bug Tracker, https://github.com/EvoScientist/EvoScientist/issues
-Project-URL: Documentation, https://github.com/EvoScientist/EvoScientist#readme
-Keywords: ai-scientific,scientific-discovery,self-evolving,ai-scientists,end-to-end
-Classifier: Programming Language :: Python :: 3
-Requires-Python: >=3.11
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: deepagents>=0.3.6
-Requires-Dist: langchain>=1.2
-Requires-Dist: langchain-anthropic>=1.3
-Requires-Dist: langchain-openai>=0.3
-Requires-Dist: langchain-nvidia-ai-endpoints>=0.3
-Requires-Dist: tavily-python>=0.7
-Requires-Dist: pyyaml>=6.0
-Requires-Dist: rich>=14.0
-Requires-Dist: prompt-toolkit>=3.0
-Requires-Dist: questionary>=2.0.1
-Requires-Dist: typer>=0.12
-Requires-Dist: python-dotenv>=1.0
-Requires-Dist: langgraph-cli[inmem]>=0.4
-Requires-Dist: httpx>=0.27
-Requires-Dist: markdownify>=0.14
-Provides-Extra: dev
-Requires-Dist: pytest>=8.0; extra == "dev"
-Requires-Dist: pytest-cov>=5.0; extra == "dev"
-Requires-Dist: ruff>=0.5; extra == "dev"
-Requires-Dist: build>=1.0; extra == "dev"
-Dynamic: license-file
-
-<!-- Add logo here -->
-<h1 align="center">
-  <!-- <img src="./assets/CCD_icon_logo.png" alt="CCD Logo" height="27" style="position: relative; top: -2px;"/> -->
-  <strong>EvoScientist</strong>
-</h1>
-
-
-<div align="center">
-
-<a href="https://git.io/typing-svg"><img src="https://readme-typing-svg.demolab.com?font=Fira+Code&pause=1000&width=435&lines=Towards+Self-Evolving+AI+Scientists+for+End-to-End+Scientific+Discovery" alt="Typing SVG" /></a>
-
-[![PyPI](https://img.shields.io/badge/PyPI-EvoScientist%20v0.0.1-3da9fc?style=for-the-badge&logo=python&logoColor=3da9fc)](https://pypi.org/project/EvoScientist/)
-[![Project Page](https://img.shields.io/badge/Project-Page-ff8e3c?style=for-the-badge&logo=googlelens&logoColor=ff8e3c)]()
-[![arXiv](https://img.shields.io/badge/arXiv-xxxx.xxxx-b31b1b?style=for-the-badge&logo=arxiv&logoColor=b31b1b)]()
-[![License](https://img.shields.io/badge/License-MIT-green?style=for-the-badge)]()
-<!-- [![Gradio Demo](https://img.shields.io/badge/Gradio-Online_Demo-FFCC00?style=for-the-badge&logo=gradio&logoColor=yellow&labelColor=grey)]()
-[![Evaluation Split](https://img.shields.io/badge/HF-Test_Dataset-AECBFA?style=for-the-badge&logo=huggingface&logoColor=FFCC00&labelColor=grey)]() -->
-
-</div>
-
-## 🔥 News
-> TODO
-- **[27 Sep 2025]** ⛳ Our preprint is now live on [arXiv] — check it out for details.
-
-
-## Overview
-> TODO
-
-
-## 📖 Contents
-- [🤖 Supported Models](#-supported-models)
-- [⛏️ Installation](#️-installation)
-- [🔑 API Key Configuration](#-api-key-configuration)
-- [⚡ Quick Start](#-quick-start)
-  - [CLI Inference](#cli-inference)
-  - [Script Inference](#script-inference)
-  - [Web Interface](#web-interface)
-- [📊 Evaluation](#-evaluation)
-- [📝 Citation](#-citation)
-- [📚 Acknowledgments](#-acknowledgments)
-- [📦 Codebase Contributors](#-codebase-contributors)
-- [📜 License](#-license)
-
-## 🤖 Supported Models
-
-| Provider | Short Name | Model ID |
-|----------|-----------|----------|
-| Anthropic | `claude-sonnet-4-5` | `claude-sonnet-4-5-20250929` |
-| Anthropic | `claude-opus-4-5` | `claude-opus-4-5-20251101` |
-| Anthropic | `claude-3-5-sonnet` | `claude-3-5-sonnet-20241022` |
-| Anthropic | `claude-3-5-haiku` | `claude-3-5-haiku-20241022` |
-| OpenAI | `gpt-4o` | `gpt-4o` |
-| OpenAI | `gpt-4o-mini` | `gpt-4o-mini` |
-| OpenAI | `o1` | `o1` |
-| OpenAI | `o1-mini` | `o1-mini` |
-| NVIDIA | `glm4.7` | `z-ai/glm4.7` |
-| NVIDIA | `deepseek-v3.1` | `deepseek-ai/deepseek-v3.1-terminus` |
-| NVIDIA | `nemotron-nano` | `nvidia/nemotron-3-nano-30b-a3b` |
-
-You can also use any full model ID directly — the provider will be inferred automatically.
-
-## ⛏️ Installation
-
-> [!TIP]  
-> Use [`uv`](https://pypi.org/project/uv) for installation — it's faster and more reliable than `pip`.
-### For Development
-
-```Shell
-# Create and activate a conda environment
-conda create -n EvoSci python=3.11 -y
-conda activate EvoSci
-
-# Install in development (editable) mode
-pip install EvoScientist
-# or
-pip install -e .
-```
-
-### Option 1:
-Install the latest version directly from GitHub for quick setup:
-> TODO
-### Option 2: 
-If you plan to modify the code or contribute to the project, you can clone the repository and install it in editable mode:
-
-> TODO
-
-<details>
-<summary> 🔄 Upgrade to the latest code base </summary>
-
-```Shell
-git pull
-uv pip install -e .
-```
-
-</details>
-
-## 🔑 API Key Configuration
-
-EvoScientist requires API keys for LLM inference and web search. You can configure them in three ways:
-
-### Option A: Interactive Setup Wizard (Recommended)
-
-```Shell
-EvoSci onboard
-```
-
-The wizard guides you through selecting a provider, entering API keys, choosing a model, and configuring workspace settings. Keys are validated automatically.
-
-### Option B: Environment Variables (Global)
-
-Set keys directly in your terminal session. Add these to your shell profile (`~/.bashrc`, `~/.zshrc`, etc.) to persist across sessions:
-
-```Shell
-export ANTHROPIC_API_KEY="your_anthropic_api_key_here"
-export TAVILY_API_KEY="your_tavily_api_key_here"
-
-# Optional: OpenAI or NVIDIA provider
-export OPENAI_API_KEY="your_openai_api_key_here"
-export NVIDIA_API_KEY="your_nvidia_api_key_here"
-```
-
-### Option C: `.env` File (Project-level)
-
-Create a `.env` file in the project root. This keeps keys scoped to the project and out of your shell history:
-
-```Shell
-cp .env.example .env
-```
-
-Then edit `.env` and fill in your keys:
-
-```
-ANTHROPIC_API_KEY=your_anthropic_api_key_here
-TAVILY_API_KEY=your_tavily_api_key_here
-```
-
-> [!WARNING]
-> Never commit `.env` files containing real API keys to version control. The `.env` file is already included in `.gitignore`.
-
-| Key | Required | Description |
-|-----|----------|-------------|
-| `ANTHROPIC_API_KEY` | For Anthropic | Anthropic API key for Claude ([console.anthropic.com](https://console.anthropic.com/)) |
-| `OPENAI_API_KEY` | For OpenAI | OpenAI API key for GPT models ([platform.openai.com](https://platform.openai.com/)) |
-| `NVIDIA_API_KEY` | For NVIDIA | NVIDIA API key for NIM models ([build.nvidia.com](https://build.nvidia.com/)) |
-| `TAVILY_API_KEY` | Yes | Tavily API key for web search ([app.tavily.com](https://app.tavily.com/)) |
-
-## ⚡ Quick Start
-
-### CLI Inference  
-You can perform inference directly from the command line using our CLI tool:
-
-![demo](./assets/EvoScientist_cli.png)
-
-```Shell
-python -m EvoScientist 
-```
-or
-```Shell
-EvoSci # or EvoScientist
-```
-**Optional arguments:**
-
-```
---mode <mode>      Workspace mode: 'daemon' (persistent) or 'run' (isolated per-session)
---workdir <path>   Override workspace directory for this session
---use-cwd          Use current working directory as workspace
---thread-id <id>   Resume a conversation thread
---no-thinking      Disable thinking display
--p, --prompt <q>   Single-shot mode: execute query and exit
-```
-
-**Configuration commands:**
-
-```Shell
-EvoSci onboard                # Interactive setup wizard
-EvoSci onboard --skip-validation  # Skip API key validation
-EvoSci config                 # List all configuration values
-EvoSci config get <key>       # Get a single value
-EvoSci config set <key> <val> # Set a single value
-EvoSci config reset --yes     # Reset to defaults
-EvoSci config path            # Show config file path
-```
-
-**Interactive Commands:**
-
-| Command | Description |
-|---------|-------------|
-| `/exit` | Quit the session |
-| `/new` | Start a new session (new workspace + thread) |
-| `/thread` | Show current thread ID and workspace path |
-| `/skills` | List installed user skills |
-| `/install-skill <source>` | Install a skill from local path or GitHub |
-| `/uninstall-skill <name>` | Uninstall a user-installed skill |
-
-**Skill Installation Examples:**
-
-```bash
-# Install from local path
-/install-skill ./my-skill
-
-# Install from GitHub URL
-/install-skill https://github.com/owner/repo/tree/main/skill-name
-
-# Install from GitHub shorthand
-/install-skill owner/repo@skill-name
-```
-
-### Runtime Directories
-
-By default, the **workspace** is created under the current directory:
-
-```
-./workspace/
-  memory/   # shared MEMORY.md (persistent across sessions)
-  skills/   # user-installed skills
-  runs/     # per-session workspaces
-```
-
-You can force workspace to be the current directory via `--use-cwd`.
-
-Override individual paths via environment variables:
-
-| Variable | Default | Description |
-|----------|---------|-------------|
-| `EVOSCIENTIST_WORKSPACE_DIR` | `./workspace` | Root workspace directory |
-| `EVOSCIENTIST_RUNS_DIR` | `./workspace/runs` | Per-session run directories |
-| `EVOSCIENTIST_MEMORY_DIR` | `./workspace/memory` | Shared memory storage |
-| `EVOSCIENTIST_SKILLS_DIR` | `./workspace/skills` | User-installed skills |
-
-### Script Inference
-```python
-from EvoScientist import EvoScientist_agent
-from langchain_core.messages import HumanMessage
-from EvoScientist.utils import format_messages
-
-thread = {"configurable": {"thread_id": "1"}}
-question = "Hi?"
-last_len = 0
-
-for state in EvoScientist_agent.stream(
-    {"messages": [HumanMessage(content=question)]},
-    config=thread,
-    stream_mode="values",
-):
-    msgs = state["messages"]
-    if len(msgs) > last_len:
-        format_messages(msgs[last_len:]) 
-        last_len = len(msgs)
-```
-
-<details>
-<summary> Output </summary>
-
-```json
-
-╭─────────────────────────────────────────────────── 🧑 Human ────────────────────────────────────────────────────╮
-│ Hi?                                                                                                             │
-╰─────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯
-╭───────────────────────────────────────────────────── 📝 AI ─────────────────────────────────────────────────────╮
-│ Hi! I'm here to help you with experimental research tasks. I can assist with:                                   │
-│                                                                                                                 │
-│ - **Planning experiments** - designing stages, success criteria, and workflows                                  │
-│ - **Running experiments** - implementing baselines, training models, analyzing results                          │
-│ - **Research** - finding papers, methods, datasets, and baselines                                               │
-│ - **Analysis** - computing metrics, creating visualizations, interpreting results                               │
-│ - **Writing** - drafting experimental reports and documentation                                                 │
-│                                                                                                                 │
-│ What would you like to work on today?                                                                           │
-╰─────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯
-```
-
-</details>
-
-### Web Interface  
-
-> TODO
-
-
-## 📊 Evaluation  
-
-> TODO
-
-## 📝 Citation
-
-If you find our paper and code useful in your research and applications, please cite using this BibTeX:
-
-> TODO
-
-## 📚 Acknowledgments
-
-This project builds upon the following outstanding open-source works:
-
-- [**Deep Agents**](https://github.com/langchain-ai/deepagents) — A framework for building AI agents that can interact with various tools and environments.
-- [**Deep Agents UI**](https://github.com/langchain-ai/deep-agents-ui) — A user interface for visualising and managing Deep Agents.
-
-We thank the authors for their valuable contributions to the open-source community.
-
-
-## 📦 Codebase Contributors
-
-<table>
-  <tbody>
-    <tr>
-      <td align="center">
-        <a href="https://youganglyu.github.io/">
-          <img src="https://youganglyu.github.io/images/profile.png"
-               width="100" height="100"
-               style="object-fit: cover; border-radius: 20%;" alt="Yougang Lyu"/>
-          <br />
-          <sub><b>Yougang Lyu</b></sub>
-        </a>
-      </td>
-      <td align="center">
-        <a href="https://x-izhang.github.io/">
-          <img src="https://x-izhang.github.io/author/xi-zhang/avatar_hu13660783057866068725.jpg"
-               width="100" height="100"
-               style="object-fit: cover; border-radius: 20%;" alt="Xi Zhang"/>
-          <br />
-          <sub><b>Xi Zhang</b></sub>
-        </a>
-      </td>
-    </tr>
-  </tbody>
-</table>
-
-For any enquiries or collaboration opportunities, please contact: [**youganglyu@gmail.com**](mailto:youganglyu@gmail.com)
-
-## 📜 License
-
-This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.

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@@ -1,5 +0,0 @@
-[console_scripts]
-EvoSci = EvoScientist.cli:main
-EvoScientist = EvoScientist.cli:main
-evosci = EvoScientist.cli:main
-evoscientist = EvoScientist.cli:main