EvoScientist 0.0.1.dev4__py3-none-any.whl → 0.1.0rc1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (113) hide show
  1. EvoScientist/EvoScientist.py +26 -62
  2. EvoScientist/__init__.py +0 -19
  3. EvoScientist/backends.py +0 -26
  4. EvoScientist/cli.py +1111 -498
  5. EvoScientist/middleware.py +8 -61
  6. EvoScientist/stream/__init__.py +0 -25
  7. EvoScientist/stream/utils.py +16 -23
  8. EvoScientist/tools.py +2 -75
  9. evoscientist-0.1.0rc1.dist-info/METADATA +199 -0
  10. evoscientist-0.1.0rc1.dist-info/RECORD +21 -0
  11. evoscientist-0.1.0rc1.dist-info/entry_points.txt +2 -0
  12. EvoScientist/config.py +0 -274
  13. EvoScientist/llm/__init__.py +0 -21
  14. EvoScientist/llm/models.py +0 -99
  15. EvoScientist/memory.py +0 -715
  16. EvoScientist/onboard.py +0 -725
  17. EvoScientist/paths.py +0 -44
  18. EvoScientist/skills/accelerate/SKILL.md +0 -332
  19. EvoScientist/skills/accelerate/references/custom-plugins.md +0 -453
  20. EvoScientist/skills/accelerate/references/megatron-integration.md +0 -489
  21. EvoScientist/skills/accelerate/references/performance.md +0 -525
  22. EvoScientist/skills/bitsandbytes/SKILL.md +0 -411
  23. EvoScientist/skills/bitsandbytes/references/memory-optimization.md +0 -521
  24. EvoScientist/skills/bitsandbytes/references/qlora-training.md +0 -521
  25. EvoScientist/skills/bitsandbytes/references/quantization-formats.md +0 -447
  26. EvoScientist/skills/find-skills/SKILL.md +0 -133
  27. EvoScientist/skills/find-skills/scripts/install_skill.py +0 -211
  28. EvoScientist/skills/flash-attention/SKILL.md +0 -367
  29. EvoScientist/skills/flash-attention/references/benchmarks.md +0 -215
  30. EvoScientist/skills/flash-attention/references/transformers-integration.md +0 -293
  31. EvoScientist/skills/llama-cpp/SKILL.md +0 -258
  32. EvoScientist/skills/llama-cpp/references/optimization.md +0 -89
  33. EvoScientist/skills/llama-cpp/references/quantization.md +0 -213
  34. EvoScientist/skills/llama-cpp/references/server.md +0 -125
  35. EvoScientist/skills/lm-evaluation-harness/SKILL.md +0 -490
  36. EvoScientist/skills/lm-evaluation-harness/references/api-evaluation.md +0 -490
  37. EvoScientist/skills/lm-evaluation-harness/references/benchmark-guide.md +0 -488
  38. EvoScientist/skills/lm-evaluation-harness/references/custom-tasks.md +0 -602
  39. EvoScientist/skills/lm-evaluation-harness/references/distributed-eval.md +0 -519
  40. EvoScientist/skills/ml-paper-writing/SKILL.md +0 -937
  41. EvoScientist/skills/ml-paper-writing/references/checklists.md +0 -361
  42. EvoScientist/skills/ml-paper-writing/references/citation-workflow.md +0 -562
  43. EvoScientist/skills/ml-paper-writing/references/reviewer-guidelines.md +0 -367
  44. EvoScientist/skills/ml-paper-writing/references/sources.md +0 -159
  45. EvoScientist/skills/ml-paper-writing/references/writing-guide.md +0 -476
  46. EvoScientist/skills/ml-paper-writing/templates/README.md +0 -251
  47. EvoScientist/skills/ml-paper-writing/templates/aaai2026/README.md +0 -534
  48. EvoScientist/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-supp.tex +0 -144
  49. EvoScientist/skills/ml-paper-writing/templates/aaai2026/aaai2026-unified-template.tex +0 -952
  50. EvoScientist/skills/ml-paper-writing/templates/aaai2026/aaai2026.bib +0 -111
  51. EvoScientist/skills/ml-paper-writing/templates/aaai2026/aaai2026.bst +0 -1493
  52. EvoScientist/skills/ml-paper-writing/templates/aaai2026/aaai2026.sty +0 -315
  53. EvoScientist/skills/ml-paper-writing/templates/acl/README.md +0 -50
  54. EvoScientist/skills/ml-paper-writing/templates/acl/acl.sty +0 -312
  55. EvoScientist/skills/ml-paper-writing/templates/acl/acl_latex.tex +0 -377
  56. EvoScientist/skills/ml-paper-writing/templates/acl/acl_lualatex.tex +0 -101
  57. EvoScientist/skills/ml-paper-writing/templates/acl/acl_natbib.bst +0 -1940
  58. EvoScientist/skills/ml-paper-writing/templates/acl/anthology.bib.txt +0 -26
  59. EvoScientist/skills/ml-paper-writing/templates/acl/custom.bib +0 -70
  60. EvoScientist/skills/ml-paper-writing/templates/acl/formatting.md +0 -326
  61. EvoScientist/skills/ml-paper-writing/templates/colm2025/README.md +0 -3
  62. EvoScientist/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bib +0 -11
  63. EvoScientist/skills/ml-paper-writing/templates/colm2025/colm2025_conference.bst +0 -1440
  64. EvoScientist/skills/ml-paper-writing/templates/colm2025/colm2025_conference.pdf +0 -0
  65. EvoScientist/skills/ml-paper-writing/templates/colm2025/colm2025_conference.sty +0 -218
  66. EvoScientist/skills/ml-paper-writing/templates/colm2025/colm2025_conference.tex +0 -305
  67. EvoScientist/skills/ml-paper-writing/templates/colm2025/fancyhdr.sty +0 -485
  68. EvoScientist/skills/ml-paper-writing/templates/colm2025/math_commands.tex +0 -508
  69. EvoScientist/skills/ml-paper-writing/templates/colm2025/natbib.sty +0 -1246
  70. EvoScientist/skills/ml-paper-writing/templates/iclr2026/fancyhdr.sty +0 -485
  71. EvoScientist/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bib +0 -24
  72. EvoScientist/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.bst +0 -1440
  73. EvoScientist/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.pdf +0 -0
  74. EvoScientist/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.sty +0 -246
  75. EvoScientist/skills/ml-paper-writing/templates/iclr2026/iclr2026_conference.tex +0 -414
  76. EvoScientist/skills/ml-paper-writing/templates/iclr2026/math_commands.tex +0 -508
  77. EvoScientist/skills/ml-paper-writing/templates/iclr2026/natbib.sty +0 -1246
  78. EvoScientist/skills/ml-paper-writing/templates/icml2026/algorithm.sty +0 -79
  79. EvoScientist/skills/ml-paper-writing/templates/icml2026/algorithmic.sty +0 -201
  80. EvoScientist/skills/ml-paper-writing/templates/icml2026/example_paper.bib +0 -75
  81. EvoScientist/skills/ml-paper-writing/templates/icml2026/example_paper.pdf +0 -0
  82. EvoScientist/skills/ml-paper-writing/templates/icml2026/example_paper.tex +0 -662
  83. EvoScientist/skills/ml-paper-writing/templates/icml2026/fancyhdr.sty +0 -864
  84. EvoScientist/skills/ml-paper-writing/templates/icml2026/icml2026.bst +0 -1443
  85. EvoScientist/skills/ml-paper-writing/templates/icml2026/icml2026.sty +0 -767
  86. EvoScientist/skills/ml-paper-writing/templates/icml2026/icml_numpapers.pdf +0 -0
  87. EvoScientist/skills/ml-paper-writing/templates/neurips2025/Makefile +0 -36
  88. EvoScientist/skills/ml-paper-writing/templates/neurips2025/extra_pkgs.tex +0 -53
  89. EvoScientist/skills/ml-paper-writing/templates/neurips2025/main.tex +0 -38
  90. EvoScientist/skills/ml-paper-writing/templates/neurips2025/neurips.sty +0 -382
  91. EvoScientist/skills/peft/SKILL.md +0 -431
  92. EvoScientist/skills/peft/references/advanced-usage.md +0 -514
  93. EvoScientist/skills/peft/references/troubleshooting.md +0 -480
  94. EvoScientist/skills/ray-data/SKILL.md +0 -326
  95. EvoScientist/skills/ray-data/references/integration.md +0 -82
  96. EvoScientist/skills/ray-data/references/transformations.md +0 -83
  97. EvoScientist/skills/skill-creator/LICENSE.txt +0 -202
  98. EvoScientist/skills/skill-creator/SKILL.md +0 -356
  99. EvoScientist/skills/skill-creator/references/output-patterns.md +0 -82
  100. EvoScientist/skills/skill-creator/references/workflows.md +0 -28
  101. EvoScientist/skills/skill-creator/scripts/init_skill.py +0 -303
  102. EvoScientist/skills/skill-creator/scripts/package_skill.py +0 -110
  103. EvoScientist/skills/skill-creator/scripts/quick_validate.py +0 -95
  104. EvoScientist/skills_manager.py +0 -391
  105. EvoScientist/stream/display.py +0 -604
  106. EvoScientist/stream/events.py +0 -415
  107. EvoScientist/stream/state.py +0 -343
  108. evoscientist-0.0.1.dev4.dist-info/METADATA +0 -367
  109. evoscientist-0.0.1.dev4.dist-info/RECORD +0 -117
  110. evoscientist-0.0.1.dev4.dist-info/entry_points.txt +0 -5
  111. {evoscientist-0.0.1.dev4.dist-info → evoscientist-0.1.0rc1.dist-info}/WHEEL +0 -0
  112. {evoscientist-0.0.1.dev4.dist-info → evoscientist-0.1.0rc1.dist-info}/licenses/LICENSE +0 -0
  113. {evoscientist-0.0.1.dev4.dist-info → evoscientist-0.1.0rc1.dist-info}/top_level.txt +0 -0
@@ -1,361 +0,0 @@
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- # Conference Paper Checklists
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-
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- This reference documents the mandatory checklist requirements for major ML/AI conferences. All major venues now require paper checklists—missing them results in desk rejection.
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-
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- ---
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-
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- ## Contents
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-
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- - [NeurIPS Paper Checklist](#neurips-paper-checklist)
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- - [ICML Paper Checklist](#icml-paper-checklist)
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- - [ICLR Requirements](#iclr-requirements)
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- - [ACL Requirements](#acl-requirements)
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- - [Universal Pre-Submission Checklist](#universal-pre-submission-checklist)
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-
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- ---
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-
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- ## NeurIPS Paper Checklist
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-
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- ### Mandatory Components
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- All NeurIPS submissions must include a completed paper checklist. Papers lacking this element face **automatic desk rejection**. The checklist appears after references and supplemental material, outside the page limit.
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-
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- ### 16 Required Checklist Items
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- #### 1. Claims Alignment
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- Authors must verify that abstract and introduction claims match theoretical and experimental results, with clearly stated contributions, assumptions, and limitations.
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-
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- **What to check:**
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- - [ ] Abstract claims match actual results
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- - [ ] Introduction doesn't overclaim
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- - [ ] Contributions are specific and falsifiable
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-
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- #### 2. Limitations Discussion
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- Papers should include a dedicated "Limitations" section addressing strong assumptions, robustness to violations, scope constraints, and performance-influencing factors.
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- **What to include:**
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- - [ ] Dedicated Limitations section
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- - [ ] Honest assessment of scope
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- - [ ] Conditions where method may fail
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- #### 3. Theory & Proofs
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- Theoretical contributions require full assumption statements and complete proofs (main paper or appendix with proof sketches for intuition).
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- **What to check:**
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- - [ ] All assumptions stated formally
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- - [ ] Complete proofs provided (main text or appendix)
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- - [ ] Proof sketches for intuition in main text
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- #### 4. Reproducibility
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- Authors must describe steps ensuring results verification through code release, detailed instructions, model access, or checkpoints appropriate to their contribution type.
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- **What to provide:**
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- - [ ] Clear reproducibility statement
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- - [ ] Code availability information
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- - [ ] Model checkpoints if applicable
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- #### 5. Data & Code Access
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- Instructions for reproducing main experimental results should be provided (supplemental material or URLs), including exact commands and environment specifications.
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- **What to include:**
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- - [ ] Exact commands to run experiments
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- - [ ] Environment specifications (requirements.txt, conda env)
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- - [ ] Data access instructions
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- #### 6. Experimental Details
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- Papers must specify training details: data splits, hyperparameters, and selection methods in the main paper or supplementary materials.
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- **What to document:**
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- - [ ] Train/val/test split details
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- - [ ] All hyperparameters used
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- - [ ] Hyperparameter selection method
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- #### 7. Statistical Significance
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- Results require error bars, confidence intervals, or statistical tests with clearly stated calculation methods and underlying assumptions.
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- **What to include:**
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- - [ ] Error bars or confidence intervals
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- - [ ] Number of runs/seeds
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- - [ ] Calculation method (std dev vs std error)
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- #### 8. Compute Resources
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- Specifications needed: compute worker types (CPU/GPU), memory, storage, execution time per run, and total project compute requirements.
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- **What to document:**
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- - [ ] GPU type and count
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- - [ ] Training time per run
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- - [ ] Total compute used
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- #### 9. Ethics Code Compliance
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- Authors confirm adherence to the NeurIPS Code of Ethics, noting any necessary deviations.
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- **What to verify:**
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- - [ ] Read NeurIPS Code of Ethics
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- - [ ] Confirm compliance
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- - [ ] Note any deviations with justification
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- #### 10. Broader Impacts
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- Discussion of potential negative societal applications, fairness concerns, privacy risks, and possible mitigation strategies when applicable.
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- **What to address:**
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- - [ ] Potential negative applications
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- - [ ] Fairness considerations
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- - [ ] Privacy implications
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- - [ ] Mitigation strategies
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- #### 11. Safeguards
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- High-risk models (language models, internet-scraped datasets) require controlled release mechanisms and usage guidelines.
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- **What to consider:**
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- - [ ] Release strategy for sensitive models
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- - [ ] Usage guidelines if needed
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- - [ ] Access controls if appropriate
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- #### 12. License Respect
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- All existing assets require creator citations, license names, URLs, version numbers, and terms-of-service acknowledgment.
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- **What to document:**
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- - [ ] Dataset licenses cited
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- - [ ] Code licenses respected
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- - [ ] Version numbers included
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- #### 13. Asset Documentation
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- New releases need structured templates documenting training details, limitations, consent procedures, and licensing information.
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- **For new datasets/models:**
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- - [ ] Datasheet or model card
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- - [ ] Training data documentation
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- - [ ] Known limitations
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- #### 14. Human Subjects
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- Crowdsourcing studies must include participant instructions, screenshots, compensation details, and comply with minimum wage requirements.
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- **What to include:**
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- - [ ] Task instructions
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- - [ ] Compensation details
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- - [ ] Time estimates
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- #### 15. IRB Approvals
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- Human subjects research requires documented institutional review board approval or equivalent, with risk descriptions disclosed (maintaining anonymity at submission).
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- **What to verify:**
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- - [ ] IRB approval obtained
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- - [ ] Risk assessment completed
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- - [ ] Anonymized at submission
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- #### 16. LLM Declaration
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- Usage of large language models as core methodology components requires disclosure; writing/editing use doesn't require declaration.
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- **What to disclose:**
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- - [ ] LLM used as core methodology component
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- - [ ] How LLM was used
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- - [ ] (Writing assistance doesn't require disclosure)
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- ### Response Format
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- Authors select "yes," "no," or "N/A" per question, with optional 1-2 sentence justifications.
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- **Important:** Reviewers are explicitly instructed not to penalize honest limitation acknowledgment.
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- ---
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- ## ICML Paper Checklist
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- ### Broader Impact Statement
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- ICML requires a Broader Impact Statement at the end of the paper, before references. This does NOT count toward the page limit.
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- **Required elements:**
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- - Potential positive impacts
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- - Potential negative impacts
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- - Mitigation strategies
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- - Who may be affected
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- ### ICML Specific Requirements
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- #### Reproducibility Checklist
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- - [ ] Data splits clearly specified
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- - [ ] Hyperparameters listed
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- - [ ] Search ranges documented
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- - [ ] Selection method explained
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- - [ ] Compute resources specified
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- - [ ] Code availability stated
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- #### Statistical Reporting
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- - [ ] Error bars on all figures
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- - [ ] Standard deviation vs standard error specified
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- - [ ] Number of runs stated
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- - [ ] Significance tests if comparing methods
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- #### Anonymization
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- - [ ] No author names in paper
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- - [ ] No acknowledgments
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- - [ ] No grant numbers
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- - [ ] Prior work cited in third person
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- - [ ] No identifiable repository URLs
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- ---
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- ## ICLR Requirements
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- ### LLM Disclosure Policy (New for 2026)
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- ICLR has a specific LLM disclosure requirement:
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- > "If LLMs played a significant role in research ideation and/or writing to the extent that they could be regarded as a contributor, authors must describe their precise role in a separate appendix section."
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- **When disclosure is required:**
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- - LLM used for significant research ideation
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- - LLM used for substantial writing
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- - LLM could be considered a contributor
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- **When disclosure is NOT required:**
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- - Grammar checking
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- - Minor editing assistance
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- - Code completion tools
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- **Consequences of non-disclosure:**
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- - Desk rejection
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- - Potential post-publication issues
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- ### ICLR Specific Requirements
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- #### Reproducibility Statement (Optional but Recommended)
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- Add a statement referencing:
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- - Supporting materials
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- - Code availability
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- - Data availability
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- - Model checkpoints
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- #### Ethics Statement (Optional)
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- Address potential concerns in ≤1 page. Does not count toward page limit.
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- #### Reciprocal Reviewing
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- - Authors on 3+ papers must serve as reviewers for ≥6 papers
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- - Each submission needs ≥1 author registered to review ≥3 papers
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- ---
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- ## ACL Requirements
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- ### Limitations Section (Mandatory)
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- ACL specifically requires a Limitations section:
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- **What to include:**
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- - Strong assumptions made
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- - Scope limitations
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- - When method may fail
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- - Generalization concerns
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- **Important:** The Limitations section does NOT count toward the page limit.
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- ### ACL Specific Checklist
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- #### Responsible NLP
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- - [ ] Bias considerations addressed
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- - [ ] Fairness evaluated if applicable
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- - [ ] Dual-use concerns discussed
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- #### Multilingual Considerations
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- If applicable:
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- - [ ] Language diversity addressed
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- - [ ] Non-English languages included
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- - [ ] Translation quality verified
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- #### Human Evaluation
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- If applicable:
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- - [ ] Annotator details provided
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- - [ ] Agreement metrics reported
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- - [ ] Compensation documented
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- ---
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- ## Universal Pre-Submission Checklist
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- ### Before Every Submission
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- #### Paper Content
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- - [ ] Abstract ≤ word limit (usually 250-300 words)
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- - [ ] Main content within page limit
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- - [ ] References complete and verified
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- - [ ] Limitations section included
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- - [ ] All figures/tables have captions
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- - [ ] Captions are self-contained
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- #### Formatting
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- - [ ] Correct template used (venue + year specific)
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- - [ ] Margins not modified
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- - [ ] Font sizes not modified
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- - [ ] Double-blind requirements met
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- - [ ] Page numbers (for review) or none (camera-ready)
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- #### Technical
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- - [ ] All claims supported by evidence
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- - [ ] Error bars included
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- - [ ] Baselines appropriate
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- - [ ] Hyperparameters documented
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- - [ ] Compute resources stated
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- #### Reproducibility
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- - [ ] Code will be available (or justification)
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- - [ ] Data will be available (or justification)
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- - [ ] Environment documented
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- - [ ] Commands to reproduce provided
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- #### Ethics
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- - [ ] Broader impacts considered
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- - [ ] Limitations honestly stated
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- - [ ] Licenses respected
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- - [ ] IRB obtained if needed
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- #### Final Checks
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- - [ ] PDF compiles without errors
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- - [ ] All figures render correctly
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- - [ ] All citations resolve
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- - [ ] Supplementary material organized
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- - [ ] Conference checklist completed
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- ---
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- ## Quick Reference: Page Limits
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- | Conference | Main Content | References | Appendix |
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- |------------|-------------|------------|----------|
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- | NeurIPS 2025 | 9 pages | Unlimited | Unlimited (checklist separate) |
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- | ICML 2026 | 8 pages (+1 camera) | Unlimited | Unlimited |
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- | ICLR 2026 | 9 pages (+1 camera) | Unlimited | Unlimited |
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- | ACL 2025 | 8 pages (long) | Unlimited | Unlimited |
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- | AAAI 2026 | 7 pages (+1 camera) | Unlimited | Unlimited |
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- | COLM 2025 | 9 pages (+1 camera) | Unlimited | Unlimited |
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- ---
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- ## Template Locations
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- All conference templates are in the `templates/` directory:
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- ```
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- templates/
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- ├── icml2026/ # ICML 2026 official
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- ├── iclr2026/ # ICLR 2026 official
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- ├── neurips2025/ # NeurIPS 2025
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- ├── acl/ # ACL style files
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- ├── aaai2026/ # AAAI 2026
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- └── colm2025/ # COLM 2025
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- ```