ECOv003-L2T-STARS 1.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
|
@@ -0,0 +1,201 @@
|
|
|
1
|
+
Apache License
|
|
2
|
+
Version 2.0, January 2004
|
|
3
|
+
http://www.apache.org/licenses/
|
|
4
|
+
|
|
5
|
+
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
|
6
|
+
|
|
7
|
+
1. Definitions.
|
|
8
|
+
|
|
9
|
+
"License" shall mean the terms and conditions for use, reproduction,
|
|
10
|
+
and distribution as defined by Sections 1 through 9 of this document.
|
|
11
|
+
|
|
12
|
+
"Licensor" shall mean the copyright owner or entity authorized by
|
|
13
|
+
the copyright owner that is granting the License.
|
|
14
|
+
|
|
15
|
+
"Legal Entity" shall mean the union of the acting entity and all
|
|
16
|
+
other entities that control, are controlled by, or are under common
|
|
17
|
+
control with that entity. For the purposes of this definition,
|
|
18
|
+
"control" means (i) the power, direct or indirect, to cause the
|
|
19
|
+
direction or management of such entity, whether by contract or
|
|
20
|
+
otherwise, or (ii) ownership of fifty percent (50%) or more of the
|
|
21
|
+
outstanding shares, or (iii) beneficial ownership of such entity.
|
|
22
|
+
|
|
23
|
+
"You" (or "Your") shall mean an individual or Legal Entity
|
|
24
|
+
exercising permissions granted by this License.
|
|
25
|
+
|
|
26
|
+
"Source" form shall mean the preferred form for making modifications,
|
|
27
|
+
including but not limited to software source code, documentation
|
|
28
|
+
source, and configuration files.
|
|
29
|
+
|
|
30
|
+
"Object" form shall mean any form resulting from mechanical
|
|
31
|
+
transformation or translation of a Source form, including but
|
|
32
|
+
not limited to compiled object code, generated documentation,
|
|
33
|
+
and conversions to other media types.
|
|
34
|
+
|
|
35
|
+
"Work" shall mean the work of authorship, whether in Source or
|
|
36
|
+
Object form, made available under the License, as indicated by a
|
|
37
|
+
copyright notice that is included in or attached to the work
|
|
38
|
+
(an example is provided in the Appendix below).
|
|
39
|
+
|
|
40
|
+
"Derivative Works" shall mean any work, whether in Source or Object
|
|
41
|
+
form, that is based on (or derived from) the Work and for which the
|
|
42
|
+
editorial revisions, annotations, elaborations, or other modifications
|
|
43
|
+
represent, as a whole, an original work of authorship. For the purposes
|
|
44
|
+
of this License, Derivative Works shall not include works that remain
|
|
45
|
+
separable from, or merely link (or bind by name) to the interfaces of,
|
|
46
|
+
the Work and Derivative Works thereof.
|
|
47
|
+
|
|
48
|
+
"Contribution" shall mean any work of authorship, including
|
|
49
|
+
the original version of the Work and any modifications or additions
|
|
50
|
+
to that Work or Derivative Works thereof, that is intentionally
|
|
51
|
+
submitted to Licensor for inclusion in the Work by the copyright owner
|
|
52
|
+
or by an individual or Legal Entity authorized to submit on behalf of
|
|
53
|
+
the copyright owner. For the purposes of this definition, "submitted"
|
|
54
|
+
means any form of electronic, verbal, or written communication sent
|
|
55
|
+
to the Licensor or its representatives, including but not limited to
|
|
56
|
+
communication on electronic mailing lists, source code control systems,
|
|
57
|
+
and issue tracking systems that are managed by, or on behalf of, the
|
|
58
|
+
Licensor for the purpose of discussing and improving the Work, but
|
|
59
|
+
excluding communication that is conspicuously marked or otherwise
|
|
60
|
+
designated in writing by the copyright owner as "Not a Contribution."
|
|
61
|
+
|
|
62
|
+
"Contributor" shall mean Licensor and any individual or Legal Entity
|
|
63
|
+
on behalf of whom a Contribution has been received by Licensor and
|
|
64
|
+
subsequently incorporated within the Work.
|
|
65
|
+
|
|
66
|
+
2. Grant of Copyright License. Subject to the terms and conditions of
|
|
67
|
+
this License, each Contributor hereby grants to You a perpetual,
|
|
68
|
+
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
|
|
69
|
+
copyright license to reproduce, prepare Derivative Works of,
|
|
70
|
+
publicly display, publicly perform, sublicense, and distribute the
|
|
71
|
+
Work and such Derivative Works in Source or Object form.
|
|
72
|
+
|
|
73
|
+
3. Grant of Patent License. Subject to the terms and conditions of
|
|
74
|
+
this License, each Contributor hereby grants to You a perpetual,
|
|
75
|
+
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
|
|
76
|
+
(except as stated in this section) patent license to make, have made,
|
|
77
|
+
use, offer to sell, sell, import, and otherwise transfer the Work,
|
|
78
|
+
where such license applies only to those patent claims licensable
|
|
79
|
+
by such Contributor that are necessarily infringed by their
|
|
80
|
+
Contribution(s) alone or by combination of their Contribution(s)
|
|
81
|
+
with the Work to which such Contribution(s) was submitted. If You
|
|
82
|
+
institute patent litigation against any entity (including a
|
|
83
|
+
cross-claim or counterclaim in a lawsuit) alleging that the Work
|
|
84
|
+
or a Contribution incorporated within the Work constitutes direct
|
|
85
|
+
or contributory patent infringement, then any patent licenses
|
|
86
|
+
granted to You under this License for that Work shall terminate
|
|
87
|
+
as of the date such litigation is filed.
|
|
88
|
+
|
|
89
|
+
4. Redistribution. You may reproduce and distribute copies of the
|
|
90
|
+
Work or Derivative Works thereof in any medium, with or without
|
|
91
|
+
modifications, and in Source or Object form, provided that You
|
|
92
|
+
meet the following conditions:
|
|
93
|
+
|
|
94
|
+
(a) You must give any other recipients of the Work or
|
|
95
|
+
Derivative Works a copy of this License; and
|
|
96
|
+
|
|
97
|
+
(b) You must cause any modified files to carry prominent notices
|
|
98
|
+
stating that You changed the files; and
|
|
99
|
+
|
|
100
|
+
(c) You must retain, in the Source form of any Derivative Works
|
|
101
|
+
that You distribute, all copyright, patent, trademark, and
|
|
102
|
+
attribution notices from the Source form of the Work,
|
|
103
|
+
excluding those notices that do not pertain to any part of
|
|
104
|
+
the Derivative Works; and
|
|
105
|
+
|
|
106
|
+
(d) If the Work includes a "NOTICE" text file as part of its
|
|
107
|
+
distribution, then any Derivative Works that You distribute must
|
|
108
|
+
include a readable copy of the attribution notices contained
|
|
109
|
+
within such NOTICE file, excluding those notices that do not
|
|
110
|
+
pertain to any part of the Derivative Works, in at least one
|
|
111
|
+
of the following places: within a NOTICE text file distributed
|
|
112
|
+
as part of the Derivative Works; within the Source form or
|
|
113
|
+
documentation, if provided along with the Derivative Works; or,
|
|
114
|
+
within a display generated by the Derivative Works, if and
|
|
115
|
+
wherever such third-party notices normally appear. The contents
|
|
116
|
+
of the NOTICE file are for informational purposes only and
|
|
117
|
+
do not modify the License. You may add Your own attribution
|
|
118
|
+
notices within Derivative Works that You distribute, alongside
|
|
119
|
+
or as an addendum to the NOTICE text from the Work, provided
|
|
120
|
+
that such additional attribution notices cannot be construed
|
|
121
|
+
as modifying the License.
|
|
122
|
+
|
|
123
|
+
You may add Your own copyright statement to Your modifications and
|
|
124
|
+
may provide additional or different license terms and conditions
|
|
125
|
+
for use, reproduction, or distribution of Your modifications, or
|
|
126
|
+
for any such Derivative Works as a whole, provided Your use,
|
|
127
|
+
reproduction, and distribution of the Work otherwise complies with
|
|
128
|
+
the conditions stated in this License.
|
|
129
|
+
|
|
130
|
+
5. Submission of Contributions. Unless You explicitly state otherwise,
|
|
131
|
+
any Contribution intentionally submitted for inclusion in the Work
|
|
132
|
+
by You to the Licensor shall be under the terms and conditions of
|
|
133
|
+
this License, without any additional terms or conditions.
|
|
134
|
+
Notwithstanding the above, nothing herein shall supersede or modify
|
|
135
|
+
the terms of any separate license agreement you may have executed
|
|
136
|
+
with Licensor regarding such Contributions.
|
|
137
|
+
|
|
138
|
+
6. Trademarks. This License does not grant permission to use the trade
|
|
139
|
+
names, trademarks, service marks, or product names of the Licensor,
|
|
140
|
+
except as required for reasonable and customary use in describing the
|
|
141
|
+
origin of the Work and reproducing the content of the NOTICE file.
|
|
142
|
+
|
|
143
|
+
7. Disclaimer of Warranty. Unless required by applicable law or
|
|
144
|
+
agreed to in writing, Licensor provides the Work (and each
|
|
145
|
+
Contributor provides its Contributions) on an "AS IS" BASIS,
|
|
146
|
+
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
|
|
147
|
+
implied, including, without limitation, any warranties or conditions
|
|
148
|
+
of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
|
|
149
|
+
PARTICULAR PURPOSE. You are solely responsible for determining the
|
|
150
|
+
appropriateness of using or redistributing the Work and assume any
|
|
151
|
+
risks associated with Your exercise of permissions under this License.
|
|
152
|
+
|
|
153
|
+
8. Limitation of Liability. In no event and under no legal theory,
|
|
154
|
+
whether in tort (including negligence), contract, or otherwise,
|
|
155
|
+
unless required by applicable law (such as deliberate and grossly
|
|
156
|
+
negligent acts) or agreed to in writing, shall any Contributor be
|
|
157
|
+
liable to You for damages, including any direct, indirect, special,
|
|
158
|
+
incidental, or consequential damages of any character arising as a
|
|
159
|
+
result of this License or out of the use or inability to use the
|
|
160
|
+
Work (including but not limited to damages for loss of goodwill,
|
|
161
|
+
work stoppage, computer failure or malfunction, or any and all
|
|
162
|
+
other commercial damages or losses), even if such Contributor
|
|
163
|
+
has been advised of the possibility of such damages.
|
|
164
|
+
|
|
165
|
+
9. Accepting Warranty or Additional Liability. While redistributing
|
|
166
|
+
the Work or Derivative Works thereof, You may choose to offer,
|
|
167
|
+
and charge a fee for, acceptance of support, warranty, indemnity,
|
|
168
|
+
or other liability obligations and/or rights consistent with this
|
|
169
|
+
License. However, in accepting such obligations, You may act only
|
|
170
|
+
on Your own behalf and on Your sole responsibility, not on behalf
|
|
171
|
+
of any other Contributor, and only if You agree to indemnify,
|
|
172
|
+
defend, and hold each Contributor harmless for any liability
|
|
173
|
+
incurred by, or claims asserted against, such Contributor by reason
|
|
174
|
+
of your accepting any such warranty or additional liability.
|
|
175
|
+
|
|
176
|
+
END OF TERMS AND CONDITIONS
|
|
177
|
+
|
|
178
|
+
APPENDIX: How to apply the Apache License to your work.
|
|
179
|
+
|
|
180
|
+
To apply the Apache License to your work, attach the following
|
|
181
|
+
boilerplate notice, with the fields enclosed by brackets "[]"
|
|
182
|
+
replaced with your own identifying information. (Don't include
|
|
183
|
+
the brackets!) The text should be enclosed in the appropriate
|
|
184
|
+
comment syntax for the file format. We also recommend that a
|
|
185
|
+
file or class name and description of purpose be included on the
|
|
186
|
+
same "printed page" as the copyright notice for easier
|
|
187
|
+
identification within third-party archives.
|
|
188
|
+
|
|
189
|
+
Copyright [yyyy] [name of copyright owner]
|
|
190
|
+
|
|
191
|
+
Licensed under the Apache License, Version 2.0 (the "License");
|
|
192
|
+
you may not use this file except in compliance with the License.
|
|
193
|
+
You may obtain a copy of the License at
|
|
194
|
+
|
|
195
|
+
http://www.apache.org/licenses/LICENSE-2.0
|
|
196
|
+
|
|
197
|
+
Unless required by applicable law or agreed to in writing, software
|
|
198
|
+
distributed under the License is distributed on an "AS IS" BASIS,
|
|
199
|
+
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
200
|
+
See the License for the specific language governing permissions and
|
|
201
|
+
limitations under the License.
|
|
@@ -0,0 +1,248 @@
|
|
|
1
|
+
Metadata-Version: 2.1
|
|
2
|
+
Name: ECOv003_L2T_STARS
|
|
3
|
+
Version: 1.0.0
|
|
4
|
+
Summary: ECOSTRESS Collection 3 JPL STARS Data Fusion Product Generating Executable (PGE)
|
|
5
|
+
Author-email: "Gregory H. Halverson" <gregory.h.halverson@jpl.nasa.gov>
|
|
6
|
+
Project-URL: Homepage, https://github.com/ECOSTRESS-Collection-3/ECOv003-L2T-STARS
|
|
7
|
+
Classifier: Programming Language :: Python :: 3
|
|
8
|
+
Classifier: Operating System :: OS Independent
|
|
9
|
+
Requires-Python: >=3.11
|
|
10
|
+
Description-Content-Type: text/markdown
|
|
11
|
+
License-File: LICENSE
|
|
12
|
+
Requires-Dist: colored-logging
|
|
13
|
+
Requires-Dist: ECOv002-granules
|
|
14
|
+
Requires-Dist: ECOv002-CMR
|
|
15
|
+
Requires-Dist: pandas
|
|
16
|
+
Requires-Dist: pillow
|
|
17
|
+
Requires-Dist: geopandas
|
|
18
|
+
Requires-Dist: geos5fp
|
|
19
|
+
Requires-Dist: harmonized-landsat-sentinel>=1.1.0
|
|
20
|
+
Requires-Dist: h5py
|
|
21
|
+
Requires-Dist: matplotlib
|
|
22
|
+
Requires-Dist: modland
|
|
23
|
+
Requires-Dist: msgpack
|
|
24
|
+
Requires-Dist: msgpack-numpy
|
|
25
|
+
Requires-Dist: netCDF4
|
|
26
|
+
Requires-Dist: numpy
|
|
27
|
+
Requires-Dist: pyproj
|
|
28
|
+
Requires-Dist: rasterio
|
|
29
|
+
Requires-Dist: shapely
|
|
30
|
+
Requires-Dist: scikit-image
|
|
31
|
+
Requires-Dist: affine
|
|
32
|
+
Requires-Dist: astropy
|
|
33
|
+
Requires-Dist: pycksum
|
|
34
|
+
Requires-Dist: pykdtree
|
|
35
|
+
Requires-Dist: pyresample
|
|
36
|
+
Requires-Dist: rasters
|
|
37
|
+
Requires-Dist: scikit-learn
|
|
38
|
+
Requires-Dist: scipy
|
|
39
|
+
Requires-Dist: sentinel-tiles
|
|
40
|
+
Requires-Dist: six
|
|
41
|
+
Requires-Dist: tensorflow
|
|
42
|
+
Requires-Dist: untangle
|
|
43
|
+
Requires-Dist: xmltodict
|
|
44
|
+
Provides-Extra: dev
|
|
45
|
+
Requires-Dist: pytest>=6.0; extra == "dev"
|
|
46
|
+
Requires-Dist: pytest-cov; extra == "dev"
|
|
47
|
+
|
|
48
|
+
# ECOSTRESS Collection 3 Level 2 STARS Vegetation Index & Albedo
|
|
49
|
+
|
|
50
|
+
This is the main repository for the ECOsystem Spaceborne Thermal Radiometer Experiment on Space Station (ECOSTRESS) collection 3 level 2 STARS NDVI and albedo data product. This product will utilize the [Spatial Timeseries for Automated high-Resolution multi-Sensor (STARS)](https://github.com/STARS-Data-Fusion) data fusion system to produce normalized difference vegetation index (NDVI) and albedo estimates corresponding to ECOSTRESS surface temperature measurements, to support the [evapotranspiration product](https://github.com/ECOSTRESS-Collection-3/ECOv003-L3-JET).
|
|
51
|
+
|
|
52
|
+
The ECOSTRESS collection 3 level 2 vegetation index and albedo data product is the pre-cursor to the [Surface Biology and Geology (SBG) collection 1 level 2 vegetation index and albedo data product algorithm](https://github.com/sbg-tir/SBG-TIR-L2-STARS).
|
|
53
|
+
|
|
54
|
+
[Gregory H. Halverson](https://github.com/gregory-halverson-jpl) (they/them)<br>
|
|
55
|
+
[gregory.h.halverson@jpl.nasa.gov](mailto:gregory.h.halverson@jpl.nasa.gov)<br>
|
|
56
|
+
NASA Jet Propulsion Laboratory 329G
|
|
57
|
+
|
|
58
|
+
[Margaret C. Johnson](https://github.com/majohnso) (she/her)<br>
|
|
59
|
+
[maggie.johnson@jpl.nasa.gov](mailto:maggie.johnson@jpl.nasa.gov)<br>
|
|
60
|
+
NASA Jet Propulsion Laboratory 398L
|
|
61
|
+
|
|
62
|
+
[Evan Davis](https://github.com/evandjpl) (he/him)<br>
|
|
63
|
+
[evan.w.davis@jpl.nasa.gov](mailto:evan.w.davis@jpl.nasa.gov)<br>
|
|
64
|
+
NASA Jet Propulsion Laboratory 397K
|
|
65
|
+
|
|
66
|
+
[Kerry Cawse-Nicholson](https://github.com/kcawse) (she/her)<br>
|
|
67
|
+
[kerry-anne.cawse-nicholson@jpl.nasa.gov](mailto:kerry-anne.cawse-nicholson@jpl.nasa.gov)<br>
|
|
68
|
+
NASA Jet Propulsion Laboratory 329G
|
|
69
|
+
|
|
70
|
+
[Claire Villanueva-Weeks](https://github.com/clairesvw) (she/her)<br>
|
|
71
|
+
[claire.s.villanueva-weeks@jpl.nasa.gov](mailto:claire.s.villanueva-weeks@jpl.nasa.gov)<br>
|
|
72
|
+
NASA Jet Propulsion Laboratory 329G
|
|
73
|
+
|
|
74
|
+
The code for the ECOSTRESS level 2 STARS PGE will be developed using open-science practices based on the [ECOSTRESS collection 2 gridded and tiled product generation software](https://github.com/ECOSTRESS-Collection-2/ECOSTRESS-Collection-2).
|
|
75
|
+
|
|
76
|
+
This software will produce estimates of:
|
|
77
|
+
- Normalized Difference Vegetation Index (NDVI)
|
|
78
|
+
- albedo
|
|
79
|
+
|
|
80
|
+
NDVI and albedo are estimated at 70 m ECOSTRESS standard resolution for each daytime ECOSTRESS overpass by fusing temporally sparse but fine spatial resolution images from the Harmonized Landsat Sentinel (HLS) 2.0 product with daily, moderate spatial resolution images from the Suomi NPP Visible Infrared Imaging Radiometer Suite (VIIRS) VNP09GA product. The data fusion is performed using a variant of the Spatial Timeseries for Automated high-Resolution multi-Sensor data fusion (STARS) algorithm developed by Dr. Margaret Johnson and Gregory Halverson at the Jet Propulsion Laboratory. STARS is a Bayesian timeseries methodology that provides streaming data fusion and uncertainty quantification through efficient Kalman filtering.
|
|
81
|
+
|
|
82
|
+
Operationally, each L2T STARS tile run loads the means and covariances of the STARS model saved from the most recent tile run, then iteratively advances the means and covariances forward each day updating with fine imagery from HLS and/or moderate resolution imagery from VIIRS up to the day of the target SBG overpass. A pixelwise, lagged 16-day implementation of the VNP43 algorithm (Schaaf, 2017) is used for a near-real-time BRDF correction on the VNP09GA products to produce VIIRS NDVI and albedo.
|
|
83
|
+
|
|
84
|
+
## 1. Introduction to Data Products
|
|
85
|
+
|
|
86
|
+
The data format for the ECOSTRESS products is described in the [ECOSTRESS Collection 3 landing page](https://github.com/ECOSTRESS-Collection-3).
|
|
87
|
+
|
|
88
|
+
## 2. L2T STARS NDVI and Albedo Product
|
|
89
|
+
|
|
90
|
+
```mermaid
|
|
91
|
+
flowchart TB
|
|
92
|
+
subgraph VNP43NRT[VNP43NRT.jl]
|
|
93
|
+
VNP09GA_I[VNP09GA<br>I-Band<br>500m<br>Surface<br>Reflectance]
|
|
94
|
+
VNP09GA_M[VNP09GA<br>M-Band<br>1000m<br>Surface<br>Reflectance]
|
|
95
|
+
VIIRS_downscaling[VIIRS<br>Downscaling]
|
|
96
|
+
VNP09GA_downscaled[Downscaled<br>500m<br>VIIRS<br>Surface<br>Reflectance]
|
|
97
|
+
VNP43_BRDF[VNP43NRT.jl<br>BRDF<br>Correction]
|
|
98
|
+
VIIRS_corrected[VIIRS<br>BRDF-Corrected<br>500m<br>Surface<br>Reflectance]
|
|
99
|
+
VIIRS_NDVI[VIIRS<br>500m<br>NDVI]
|
|
100
|
+
VIIRS_albedo[VIIRS<br>500m<br>Albedo]
|
|
101
|
+
end
|
|
102
|
+
|
|
103
|
+
subgraph HLS_aquisition[HLS.jl]
|
|
104
|
+
direction TB
|
|
105
|
+
Landsat_reflectance[HLS<br>Landsat<br>30m<br>Surface<br>Reflectance]
|
|
106
|
+
Landsat_upsampled[Upsampled<br>Landsat<br>70m<br>Surface<br>Reflectance]
|
|
107
|
+
Landsat_NDVI[Landsat<br>70m<br>NDVI]
|
|
108
|
+
Sentinel_reflectance[HLS<br>Sentinel<br>30m<br>Surface<br>Reflectance]
|
|
109
|
+
Sentinel_upsampled[Upsampled<br>Sentinel<br>70m<br>Surface<br>Reflectance]
|
|
110
|
+
Sentinel_NDVI[Sentinel<br>70m<br>NDVI]
|
|
111
|
+
Landsat_albedo[Landsat<br>70m<br>Albedo]
|
|
112
|
+
Sentinel_albedo[Sentinel<br>70m<br>Albedo]
|
|
113
|
+
end
|
|
114
|
+
|
|
115
|
+
subgraph bayesian_state[Bayesian State]
|
|
116
|
+
NDVI_covariance_prior[NDVI<br>Fine-Coarse<br>Covariance<br>Prior<br>from<br>Previous<br>Overpass]
|
|
117
|
+
NDVI_covariance_posterior[NDVI<br>Fine-Coarse<br>Covariance<br>Posterior<br>for<br>Next<br>Overpass]
|
|
118
|
+
albedo_covariance_prior[Albedo<br>Fine-Coarse<br>Covariance<br>Prior<br>from<br>Previous<br>Overpass]
|
|
119
|
+
albedo_covariance_posterior[Albedo<br>Fine-Coarse<br>Covariance<br>Posterior<br>for<br>Next<br>Overpass]
|
|
120
|
+
end
|
|
121
|
+
|
|
122
|
+
fine_NDVI_input[NDVI<br>70m<br>Composite]
|
|
123
|
+
NDVI_data_fusion[STARS.jl<br>NDVI<br>Data<br>Fusion]
|
|
124
|
+
fine_NDVI_output[Fused<br>30m<br>NDVI]
|
|
125
|
+
fine_NDVI_uncertainty[NDVI<br>Uncertainty]
|
|
126
|
+
|
|
127
|
+
fine_albedo_input[Albedo<br>70m<br>Composite]
|
|
128
|
+
albedo_data_fusion[STARS.jl<br>Albedo<br>Data<br>Fusion]
|
|
129
|
+
fine_albedo_output[Fused<br>30m<br>Albedo]
|
|
130
|
+
fine_albedo_uncertainty[Albedo<br>Uncertainty]
|
|
131
|
+
|
|
132
|
+
SBG_L2T_STARS(ECOSTRESS<br>L2T<br>STARS<br>NDVI<br>&<br>Albedo<br>Product)
|
|
133
|
+
|
|
134
|
+
VNP09GA_I --> VIIRS_downscaling
|
|
135
|
+
VNP09GA_M --> VIIRS_downscaling
|
|
136
|
+
VIIRS_downscaling --> VNP09GA_downscaled
|
|
137
|
+
VNP09GA_downscaled --> VNP43_BRDF
|
|
138
|
+
VNP43_BRDF --> VIIRS_corrected
|
|
139
|
+
VIIRS_corrected --> VIIRS_NDVI
|
|
140
|
+
VIIRS_corrected --> VIIRS_albedo
|
|
141
|
+
|
|
142
|
+
Landsat_reflectance --> Landsat_upsampled
|
|
143
|
+
Sentinel_reflectance --> Sentinel_upsampled
|
|
144
|
+
|
|
145
|
+
Landsat_upsampled --> Landsat_NDVI
|
|
146
|
+
Sentinel_upsampled --> Sentinel_NDVI
|
|
147
|
+
|
|
148
|
+
Landsat_upsampled --> Landsat_albedo
|
|
149
|
+
Sentinel_upsampled --> Sentinel_albedo
|
|
150
|
+
|
|
151
|
+
Landsat_NDVI --> fine_NDVI_input
|
|
152
|
+
Sentinel_NDVI --> fine_NDVI_input
|
|
153
|
+
fine_NDVI_input --> NDVI_data_fusion
|
|
154
|
+
VIIRS_NDVI --> NDVI_data_fusion
|
|
155
|
+
NDVI_covariance_prior --> NDVI_data_fusion
|
|
156
|
+
NDVI_data_fusion --> fine_NDVI_output
|
|
157
|
+
NDVI_data_fusion --> fine_NDVI_uncertainty
|
|
158
|
+
NDVI_data_fusion --> NDVI_covariance_posterior
|
|
159
|
+
|
|
160
|
+
Landsat_albedo --> fine_albedo_input
|
|
161
|
+
Sentinel_albedo --> fine_albedo_input
|
|
162
|
+
fine_albedo_input --> albedo_data_fusion
|
|
163
|
+
VIIRS_albedo --> albedo_data_fusion
|
|
164
|
+
albedo_covariance_prior --> albedo_data_fusion
|
|
165
|
+
albedo_data_fusion --> fine_albedo_output
|
|
166
|
+
albedo_data_fusion --> fine_albedo_uncertainty
|
|
167
|
+
albedo_data_fusion --> albedo_covariance_posterior
|
|
168
|
+
|
|
169
|
+
fine_NDVI_output --> SBG_L2T_STARS
|
|
170
|
+
fine_NDVI_uncertainty --> SBG_L2T_STARS
|
|
171
|
+
fine_albedo_output --> SBG_L2T_STARS
|
|
172
|
+
fine_albedo_uncertainty --> SBG_L2T_STARS
|
|
173
|
+
|
|
174
|
+
click VNP43_BRDF "https://github.com/STARS-Data-Fusion/VNP43NRT.jl"
|
|
175
|
+
click NDVI_data_fusion "https://github.com/STARS-Data-Fusion/STARS.jl"
|
|
176
|
+
click albedo_data_fusion "https://github.com/STARS-Data-Fusion/STARS.jl"
|
|
177
|
+
```
|
|
178
|
+
|
|
179
|
+
*Figure 1. Flowchart of the ECOSTRESS Collection 3 L2T STARS processing workflow.*
|
|
180
|
+
|
|
181
|
+
NDVI and albedo are estimated at 70 m ECOSTRESS standard resolution with uncertainty for each UTC day in which there is an ECOSTRESS overpass by fusing temporally sparse but fine spatial resolution images from the Harmonized Landsat Sentinel (HLS) 2.0 product with daily, moderate spatial resolution images from the Suomi NPP Visible Infrared Imaging Radiometer Suite (VIIRS) VNP09GA product.
|
|
182
|
+
|
|
183
|
+
Landsat and Sentinel surface reflectances are collected using the [HLS.jl](https://github.com/STARS-Data-Fusion/HLS.jl) package.
|
|
184
|
+
|
|
185
|
+
VIIRS surface reflectance is downscaled and BRDF corrected using the [VNP43NRT.jl](https://github.com/STARS-Data-Fusion/VNP43NRT.jl) package. A pixelwise, lagged 16-day implementation of the VNP43 algorithm (Schaaf, 2017) is used for a near-real-time BRDF correction on the VNP09GA products to produce VIIRS NDVI and albedo.
|
|
186
|
+
|
|
187
|
+
The data fusion is performed with a variant of the Spatial Timeseries for Automated high-Resolution multi-Sensor data fusion (STARS) algorithm developed by Dr. Margaret Johnson and Gregory H. Halverson at the Jet Propulsion Laboratory using the [STARS.jl](https://github.com/STARS-Data-Fusion/STARS.jl) package. STARS is a Bayesian timeseries methodology that provides streaming data fusion and uncertainty quantification through efficient Kalman filtering. Operationally, each L2T STARS tile run loads the means and covariances of the STARS model saved from the most recent tile run, then iteratively advances the means and covariances forward each day updating with fine imagery from HLS and/or moderate resolution imagery from VIIRS up to the day of the target ECOSTRESS overpass.
|
|
188
|
+
|
|
189
|
+
The layers of the L2T STARS product are listed in Table 2. All layers of this product are represented by 32-bit floating point arrays. The NDVI estimates and 1σ uncertainties (-UQ) are unitless from -1 to 1. The albedo estimates and 1σ uncertainties (-UQ) are proportions from 0 to 1.
|
|
190
|
+
|
|
191
|
+
| **Name** | **Description** | **Type** | **Units** | **Fill Value** | **No Data Value** | **Valid Min** | **Valid Max** |**Scale Factor** | **Size** |
|
|
192
|
+
| --- | --- | --- | --- | --- | --- | --- | --- | --- | -- |
|
|
193
|
+
| NDVI | Normalized Difference Vegetation Index | float32 | Index | NaN | N/A | -1 | 1 | N/A | 13.4 mb |
|
|
194
|
+
| NDVI-UQ | Normalized Difference Vegetation Index Uncertainty | float32 | Index | NaN | N/A | -1 | 1 | N/A | 13.4 mb |
|
|
195
|
+
| albedo | Albedo | float32 | Ratio | NaN | N/A | 0 | 1 | N/A | 13.4 mb |
|
|
196
|
+
| albedo-UQ | Albedo Uncertainty | float32 | Ratio | NaN | N/A | 0 | 1 | N/A | 13.4 mb |
|
|
197
|
+
|
|
198
|
+
*Table 2. Listing of L2T STARS data layers.*
|
|
199
|
+
|
|
200
|
+
## Prerequisites
|
|
201
|
+
|
|
202
|
+
This is a Python package that calls Julia code. Julia must be installed in order to run this package.
|
|
203
|
+
|
|
204
|
+
## Authentication
|
|
205
|
+
|
|
206
|
+
This package requires an [EarthData](https://urs.earthdata.nasa.gov/) account and reads EarthData credentials from `~/.netrc` in the following format:
|
|
207
|
+
|
|
208
|
+
```
|
|
209
|
+
machine urs.earthdata.nasa.gov
|
|
210
|
+
login <USERNAME>
|
|
211
|
+
password <PASSWORD>
|
|
212
|
+
```
|
|
213
|
+
|
|
214
|
+
## Environment
|
|
215
|
+
|
|
216
|
+
On macOS, there are issues with installing `pykdtree` using pip, so it's better to use a mamba environment and install the `pykdtree` mamba package.
|
|
217
|
+
|
|
218
|
+
```
|
|
219
|
+
mamba create -y -n ECOv003-L2T-STARS -c conda-forge python=3.11 jupyter pykdtree
|
|
220
|
+
mamba activate ECOv003-L2T-STARS
|
|
221
|
+
```
|
|
222
|
+
|
|
223
|
+
## Installation
|
|
224
|
+
|
|
225
|
+
Install this package from PyPi using the name `ECOv003-L2T-STARS` with dashes:
|
|
226
|
+
|
|
227
|
+
```
|
|
228
|
+
pip install ECOv003-L2T-STARS
|
|
229
|
+
```
|
|
230
|
+
|
|
231
|
+
You can also install development versions of this package directly from a clone of this repository:
|
|
232
|
+
|
|
233
|
+
```
|
|
234
|
+
pip install .
|
|
235
|
+
```
|
|
236
|
+
|
|
237
|
+
## Usage
|
|
238
|
+
|
|
239
|
+
Import this package with the name `ECOv003_L2T_STARS` with underscores:
|
|
240
|
+
|
|
241
|
+
```
|
|
242
|
+
import ECOv003_L2T_STARS
|
|
243
|
+
```
|
|
244
|
+
|
|
245
|
+
|
|
246
|
+
## References
|
|
247
|
+
|
|
248
|
+
Schaaf, C. B. et al. (2017). *Algorithm Theoretical Basis Document for MODIS Bidirectional Reflectance Distribution Function and Albedo (MOD43) Products*. NASA. [Link to source](https://lpdaac.usgs.gov/documents/110/MOD43_ATBD.pdf)
|
|
@@ -0,0 +1,5 @@
|
|
|
1
|
+
ECOv003_L2T_STARS-1.0.0.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
|
|
2
|
+
ECOv003_L2T_STARS-1.0.0.dist-info/METADATA,sha256=CPg_xIBBTlCsj6GPjNKkFwxEw17WhkYk27hzxFB-pT4,12724
|
|
3
|
+
ECOv003_L2T_STARS-1.0.0.dist-info/WHEEL,sha256=a7TGlA-5DaHMRrarXjVbQagU3Man_dCnGIWMJr5kRWo,91
|
|
4
|
+
ECOv003_L2T_STARS-1.0.0.dist-info/top_level.txt,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
|
|
5
|
+
ECOv003_L2T_STARS-1.0.0.dist-info/RECORD,,
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
|