DiadFit 0.0.84__py3-none-any.whl → 0.0.88__py3-none-any.whl

DiadFit/importing_data_files.py

@@ -14,6 +14,70 @@ import datetime
 import calendar
 
 encode="ISO-8859-1"
+## GEt video mag
+
+# Function to check if "Video Image" is in the first line, considering variations
+def line_contains_video_image(line):
+    """ This function returns video image information """
+    return "video image" in line.lower()
+    
+
+def get_video_mag(metadata_path):
+    """ This function finds all the video files in a single folder, and returns a dataframe of the filename and the magnification used. 
+    """
+    folder_path=metadata_path
+    data=[]
+    
+    
+    # Code below this
+    
+    
+    
+    # Ensure the directory exists and contains files
+    if os.path.exists(folder_path) and os.path.isdir(folder_path):
+        # Go through each file in the folder
+        for filename in os.listdir(folder_path):
+            if filename.endswith('.txt'):  # Confirming it's a text file
+                file_path = os.path.join(folder_path, filename)
+                with open(file_path, 'r', encoding="ISO-8859-1") as file:
+                    first_line = file.readline()
+                    # Initialize placeholders for magnification, width, and height
+                    magnification = None
+                    image_width = None
+                    image_height = None
+                    
+                    if "video image" in first_line.lower():  # Checks if "Video Image" is in the line
+                        for line in file:
+                            if "Objective Magnification:" in line:
+                                magnification = line.split(":")[-1].strip()
+                            elif "Image Width [µm]:" in line:
+                                image_width = line.split(":")[-1].strip()
+                            elif "Image Height [µm]:" in line:
+                                image_height = line.split(":")[-1].strip()
+                                
+                        # Add to data if magnification is found (assuming it's mandatory)
+                        if magnification:
+                            data.append({
+                                "Filename": filename,
+                                "Mag": magnification,
+                                "Width (µm)": image_width,
+                                "Height (µm)": image_height
+                            })
+    else:
+        print(f"The specified path {folder_path} does not exist or is not a directory.")
+    
+    # Create a DataFrame from the data
+    df = pd.DataFrame(data)
+    
+    # Display the DataFrame or a message if empty
+    if not df.empty:
+        return df
+    else:
+        print("No data found. Please check the folder path and the content of the files.")
+
+
+
+
 
 ## Functions for getting file names
 
@@ -37,7 +101,7 @@ def check_for_duplicates(spectra_path, prefix=True, prefix_str=' ', exception=Tr
 
     All_files_spectra= [f for f in listdir(spectra_path) if isfile(join(spectra_path, f))]
 
-    file_m=np.empty(len(All_files_spectra), dtype=object)
+    file_m=np.zeros(len(All_files_spectra), dtype=object)
     for i in range(0, len(All_files_spectra)):
         name=All_files_spectra[i]
         # If no prefix or suffix to remove, simple
@@ -129,6 +193,8 @@ def get_all_txt_files(path):
         if '.txt' in file and 'pandas' not in file:
             All_files.append(format(file))
     return All_files
+    
+# Function to get magnification of 
 
 
 ## Functions to just simply get data to plot up
@@ -925,14 +991,14 @@ def stitch_metadata_in_loop_witec(*, Allfiles, path, prefix=True, trupower=False
     date_str=[]
     month_str=[]
     # Numerical values
-    Int_time=np.empty(len(Allfiles), dtype=float)
-    objec=np.empty(len(Allfiles), dtype=float)
-    time=np.empty(len(Allfiles), dtype=float)
+    Int_time=np.zeros(len(Allfiles), dtype=float)
+    objec=np.zeros(len(Allfiles), dtype=float)
+    time=np.zeros(len(Allfiles), dtype=float)
 
-    Day=np.empty(len(Allfiles), dtype=float)
-    power=np.empty(len(Allfiles), dtype=float)
-    accumulations=np.empty(len(Allfiles), dtype=float)
-    spectral_cent=np.empty(len(Allfiles), dtype=float)
+    Day=np.zeros(len(Allfiles), dtype=float)
+    power=np.zeros(len(Allfiles), dtype=float)
+    accumulations=np.zeros(len(Allfiles), dtype=float)
+    spectral_cent=np.zeros(len(Allfiles), dtype=float)
 
     for i in tqdm(range(0, len(Allfiles))):
         filename1=Allfiles[i] #.rsplit('.',1)[0]
@@ -1081,7 +1147,7 @@ def extracting_filenames_generic(*, names, prefix=False,
 
     file_m=list(names)
 
-    file_m=np.empty(len(names), dtype=object)
+    file_m=np.zeros(len(names), dtype=object)
     for i in range(0, len(names)):
         name=names.iloc[i]
         # If no prefix or suffix to remove, simple
@@ -1126,12 +1192,12 @@ def extract_temp_Aranet(df):
     """ Extracts temperature data from the aranet
     """
     TD=str(Temp['Time(dd/mm/yyyy)'])
-    hour=np.empty(len(Temp), dtype=object)
-    date=np.empty(len(Temp), dtype=object)
-    time=np.empty(len(Temp), dtype=object)
-    minutes=np.empty(len(Temp), dtype=object)
-    seconds=np.empty(len(Temp), dtype=object)
-    secs_sm=np.empty(len(Temp), dtype=object)
+    hour=np.zeros(len(Temp), dtype=object)
+    date=np.zeros(len(Temp), dtype=object)
+    time=np.zeros(len(Temp), dtype=object)
+    minutes=np.zeros(len(Temp), dtype=object)
+    seconds=np.zeros(len(Temp), dtype=object)
+    secs_sm=np.zeros(len(Temp), dtype=object)
     for i in range(0, len(Temp)):
         TD=str(Temp['Time(dd/mm/yyyy)'].iloc[i])
         date[i]=TD.split(' ')[0]