AeroViz 0.1.21__py3-none-any.whl

aeroviz-0.1.21.dist-info/METADATA

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+Metadata-Version: 2.4
+Name: AeroViz
+Version: 0.1.21
+Summary: Aerosol data processing and visualization toolkit. Read, QC, and analyze data from SMPS, APS, AE33, TEOM, Nephelometer, XRF, and 15+ atmospheric instruments.
+Author-email: Alex Chan <alex870521@gmail.com>
+License: MIT
+Project-URL: Homepage, https://github.com/Alex870521/AeroViz
+Project-URL: Documentation, https://alex870521.github.io/AeroViz/
+Project-URL: Repository, https://github.com/Alex870521/AeroViz
+Project-URL: Issues, https://github.com/Alex870521/AeroViz/issues
+Project-URL: Changelog, https://github.com/Alex870521/AeroViz/blob/main/docs/CHANGELOG.md
+Keywords: aerosol,atmospheric-science,air-quality,data-processing,visualization,PM2.5,PM10,black-carbon,particle-size-distribution,optical-properties,SMPS,APS,aethalometer,nephelometer,TEOM,XRF,OC-EC,environmental-monitoring,research,quality-control
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Developers
+Classifier: Topic :: Scientific/Engineering :: Atmospheric Science
+Classifier: Topic :: Scientific/Engineering :: Visualization
+Classifier: Topic :: Scientific/Engineering :: Chemistry
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: pandas>=2.2.0
+Requires-Dist: numpy>=1.26.4
+Requires-Dist: matplotlib>=3.8.4
+Requires-Dist: scipy>=1.14.0
+Requires-Dist: seaborn>=0.13.2
+Requires-Dist: scikit-learn>=1.5.1
+Requires-Dist: windrose>=1.9.2
+Requires-Dist: cartopy>=0.24.1
+Requires-Dist: tabulate>=0.9.0
+Requires-Dist: rich~=13.9.4
+Requires-Dist: numba~=0.61.0
+Provides-Extra: test
+Requires-Dist: pytest>=7.0.0; extra == "test"
+Requires-Dist: pytest-cov>=4.1.0; extra == "test"
+Requires-Dist: pytest-mock>=3.10.0; extra == "test"
+Provides-Extra: dev
+Requires-Dist: black>=23.0; extra == "dev"
+Requires-Dist: isort>=5.12.0; extra == "dev"
+Requires-Dist: flake8>=6.0.0; extra == "dev"
+Requires-Dist: mypy>=1.5.0; extra == "dev"
+Requires-Dist: build; extra == "dev"
+Requires-Dist: twine; extra == "dev"
+Provides-Extra: docs
+Requires-Dist: mkdocs>=1.4.0; extra == "docs"
+Requires-Dist: mkdocs-material>=8.0; extra == "docs"
+Requires-Dist: mkdocstrings[python]>=0.18.0; extra == "docs"
+Dynamic: license-file
+
+<div align="center">
+
+# AeroViz
+
+**Aerosol Data Processing and Visualization Toolkit for Atmospheric Research**
+
+[![Python](https://img.shields.io/pypi/pyversions/aeroviz?logo=python)](https://pypi.org/project/aeroviz/)
+[![PyPI](https://img.shields.io/pypi/v/aeroviz?logo=pypi)](https://pypi.org/project/aeroviz/)
+[![Pytest](https://img.shields.io/github/actions/workflow/status/Alex870521/aeroviz/pytest.yml?logo=pytest&label=pytest)](https://github.com/Alex870521/AeroViz/actions)
+[![Documentation](https://img.shields.io/badge/docs-MkDocs-blue?logo=materialformkdocs)](https://alex870521.github.io/AeroViz/)
+[![License](https://img.shields.io/badge/license-MIT-green)](LICENSE)
+
+</div>
+
+AeroViz is a Python toolkit for reading, processing, and visualizing aerosol measurement data. It supports 18+ atmospheric instruments with built-in quality control, data processing, and publication-ready visualizations.
+
+## Installation
+
+```bash
+pip install AeroViz
+```
+
+## Quick Start
+
+```python
+from AeroViz import RawDataReader
+
+# Read AE33 Aethalometer data (black carbon)
+df = RawDataReader(
+    instrument='AE33',
+    path='/path/to/data',
+    start='2024-01-01',
+    end='2024-12-31',
+    mean_freq='1h',  # Hourly averages
+    qc=True          # Apply quality control
+)
+
+# Output: DataFrame with columns like BC1-BC7, abs_370-abs_950, AAE, eBC
+print(df[['eBC', 'AAE']].describe())
+```
+
+## Supported Instruments
+
+### Black Carbon Monitors
+
+| Instrument | Description | Output Columns |
+|------------|-------------|----------------|
+| **AE33** | Magee Aethalometer (7-wavelength) | `BC1`-`BC7`, `abs_370`-`abs_950`, `AAE`, `eBC` |
+| **AE43** | Magee Aethalometer (7-wavelength) | `BC1`-`BC7`, `abs_370`-`abs_950`, `AAE`, `eBC` |
+| **BC1054** | Met One Black Carbon Monitor | `BC`, `abs_880` |
+| **MA350** | AethLabs microAeth (5-wavelength) | `BC1`-`BC5`, `abs_375`-`abs_880` |
+
+```python
+# Example: Read black carbon data
+bc = RawDataReader('AE33', '/data/AE33', '2024-01-01', '2024-06-30')
+print(f"Mean eBC: {bc['eBC'].mean():.2f} ng/m³")
+print(f"Mean AAE: {-bc['AAE'].mean():.2f}")  # AAE stored as negative
+```
+
+### Particle Sizers
+
+| Instrument | Description | Size Range | Output Columns |
+|------------|-------------|------------|----------------|
+| **SMPS** | Scanning Mobility Particle Sizer | 10-1000 nm | Size bins, `total_num`, `GMD_num`, `GSD_num` |
+| **APS** | Aerodynamic Particle Sizer | 0.5-20 μm | Size bins, `total_num`, `GMD_num`, `GSD_num` |
+| **GRIMM** | Optical Particle Counter | 0.25-32 μm | Size bins, number concentrations |
+
+```python
+# Example: Read SMPS size distribution
+smps = RawDataReader(
+    'SMPS', '/data/SMPS', '2024-01-01', '2024-06-30',
+    size_range=(10, 500)  # Filter to 10-500 nm
+)
+print(f"Total number: {smps['total_num'].mean():.0f} #/cm³")
+print(f"GMD: {smps['GMD_num'].mean():.1f} nm")
+```
+
+### Mass Concentration
+
+| Instrument | Description | Output Columns |
+|------------|-------------|----------------|
+| **TEOM** | Tapered Element Oscillating Microbalance | `PM_NV`, `PM_Total`, `Volatile_Fraction` |
+| **BAM1020** | Beta Attenuation Monitor | `PM2.5`, `PM10` |
+
+```python
+# Example: Read TEOM PM mass data
+teom = RawDataReader('TEOM', '/data/TEOM', '2024-01-01', '2024-06-30')
+print(f"PM2.5 (non-volatile): {teom['PM_NV'].mean():.1f} μg/m³")
+print(f"PM2.5 (total): {teom['PM_Total'].mean():.1f} μg/m³")
+```
+
+### Optical Instruments
+
+| Instrument | Description | Output Columns |
+|------------|-------------|----------------|
+| **NEPH** | TSI Nephelometer | `scattering_B`, `scattering_G`, `scattering_R`, `SAE` |
+| **Aurora** | Ecotech Aurora 3000 | `scattering_B`, `scattering_G`, `scattering_R`, `SAE` |
+
+```python
+# Example: Read nephelometer scattering data
+neph = RawDataReader('Aurora', '/data/Aurora', '2024-01-01', '2024-06-30')
+print(f"Scattering (550nm): {neph['scattering_G'].mean():.1f} Mm⁻¹")
+```
+
+### Chemical Composition
+
+| Instrument | Description | Output Columns |
+|------------|-------------|----------------|
+| **Xact** | Cooper XRF Heavy Metals | `Fe`, `Zn`, `Pb`, `Cu`, `Mn`, `Cr`, `Ni`, `As`, `Cd`, ... |
+| **OCEC** | Sunset OC/EC Analyzer | `OC`, `EC`, `TC`, `OC1`-`OC4`, `EC1`-`EC3` |
+| **IGAC** | Ion Chromatograph | `SO4²⁻`, `NO3⁻`, `Cl⁻`, `NH4⁺`, `Na⁺`, `K⁺`, ... |
+| **Q-ACSM** | Aerosol Chemical Speciation Monitor | `Org`, `SO4`, `NO3`, `NH4`, `Chl` |
+
+```python
+# Example: Read XRF heavy metals data
+xrf = RawDataReader('Xact', '/data/Xact', '2024-01-01', '2024-06-30')
+print(f"Fe: {xrf['Fe'].mean():.1f} ng/m³")
+print(f"Pb: {xrf['Pb'].mean():.2f} ng/m³")
+```
+
+### Other Instruments
+
+| Instrument | Description |
+|------------|-------------|
+| **VOC** | Volatile Organic Compounds Analyzer |
+| **EPA** | Taiwan EPA Air Quality Data |
+| **Minion** | Low-cost Sensor Network |
+
+## Key Parameters
+
+| Parameter | Type | Description | Default |
+|-----------|------|-------------|---------|
+| `instrument` | str | Instrument name (see tables above) | Required |
+| `path` | str/Path | Directory containing raw data files | Required |
+| `start` | str/datetime | Start date (`'2024-01-01'` or `datetime`) | Required |
+| `end` | str/datetime | End date | Required |
+| `mean_freq` | str | Output frequency: `'1h'`, `'30min'`, `'1D'` | `'1h'` |
+| `qc` | bool/str | Quality control: `True`, `False`, or `'MS'` for monthly stats | `True` |
+| `reset` | bool/str | `True` to reprocess, `'append'` to add new data | `False` |
+| `size_range` | tuple | Size range in nm for SMPS/APS: `(min, max)` | `None` |
+
+## Quality Control
+
+AeroViz applies automatic QC based on instrument-specific rules. The `QC_Flag` column indicates data quality:
+
+| Flag | Description |
+|------|-------------|
+| `Valid` | Data passed all QC checks |
+| `Insufficient` | Not enough raw data points in period |
+| `Status Error` | Instrument reported error status |
+| `Invalid BC` | Black carbon outside valid range |
+| `Invalid Number Conc` | Particle count outside valid range |
+| `Spike` | Detected sudden unrealistic change |
+
+```python
+# Check data quality
+df = RawDataReader('AE33', '/data/AE33', '2024-01-01', '2024-06-30')
+print(df['QC_Flag'].value_counts())
+# Valid          8000
+# Insufficient    300
+# Status Error     60
+```
+
+## Data Processing
+
+Advanced analysis with specialized modules:
+
+```python
+from AeroViz import DataProcess
+from pathlib import Path
+
+# Optical property calculations
+optical = DataProcess(method='Optical', path_out=Path('./results'))
+
+# Available methods:
+# - 'Chemistry': Mass reconstruction, volume calculation, kappa
+# - 'Optical': Mie theory, IMPROVE extinction, RI retrieval
+# - 'SizeDistr': SMPS-APS merge, mode fitting, lung deposition
+# - 'VOC': OFP, SOAP, MIR calculations
+```
+
+## Visualization
+
+Publication-ready plots:
+
+```python
+from AeroViz import plot
+
+# Time series, diurnal patterns, wind rose, polar plots, etc.
+```
+
+## File Structure
+
+AeroViz expects data organized by station and instrument:
+
+```
+/data/
+├── Station_Instrument/
+│   ├── raw_file_001.dat
+│   ├── raw_file_002.dat
+│   └── instrument_outputs/    # Auto-generated
+│       ├── output_instrument.csv
+│       ├── _read_instrument_qc.csv
+│       └── report.json
+```
+
+## Documentation
+
+- [Full Documentation](https://alex870521.github.io/AeroViz/)
+- [API Reference](https://alex870521.github.io/AeroViz/api/RawDataReader/)
+- [Changelog](docs/CHANGELOG.md)
+
+## Contributing
+
+Contributions are welcome! Please see our [GitHub Issues](https://github.com/Alex870521/AeroViz/issues) for bug reports and feature requests.
+
+## License
+
+MIT License - see [LICENSE](LICENSE) for details.
+
+## Citation
+
+If you use AeroViz in your research, please cite:
+
+```
+AeroViz: Aerosol Data Processing and Visualization Toolkit
+https://github.com/Alex870521/AeroViz
+```
+
+<div align="center">
+
+## Contributors
+
+<a href="https://github.com/Alex870521"><img src="https://github.com/Alex870521.png" width="40" height="40" alt="Alex870521" style="border-radius: 50%;"></a>
+<a href="https://github.com/yrr-Su"><img src="https://github.com/yrr-Su.png" width="40" height="40" alt="yrr-Su" style="border-radius: 50%;"></a>
+<a href="https://github.com/Masbear"><img src="https://github.com/Masbear.png" width="40" height="40" alt="Masbear" style="border-radius: 50%;"></a>
+
+</div>

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aeroviz-0.1.21.dist-info/licenses/LICENSE

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+MIT License
+
+Copyright (c) 2024 Chih-Yu Chan
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

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