AOT-biomaps 2.1.3__py3-none-any.whl → 2.9.233__py3-none-any.whl

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Files changed (50) hide show
  1. AOT_biomaps/AOT_Acoustic/AcousticEnums.py +64 -0
  2. AOT_biomaps/AOT_Acoustic/AcousticTools.py +221 -0
  3. AOT_biomaps/AOT_Acoustic/FocusedWave.py +244 -0
  4. AOT_biomaps/AOT_Acoustic/IrregularWave.py +66 -0
  5. AOT_biomaps/AOT_Acoustic/PlaneWave.py +43 -0
  6. AOT_biomaps/AOT_Acoustic/StructuredWave.py +392 -0
  7. AOT_biomaps/AOT_Acoustic/__init__.py +15 -0
  8. AOT_biomaps/AOT_Acoustic/_mainAcoustic.py +978 -0
  9. AOT_biomaps/AOT_Experiment/Focus.py +55 -0
  10. AOT_biomaps/AOT_Experiment/Tomography.py +505 -0
  11. AOT_biomaps/AOT_Experiment/__init__.py +9 -0
  12. AOT_biomaps/AOT_Experiment/_mainExperiment.py +532 -0
  13. AOT_biomaps/AOT_Optic/Absorber.py +24 -0
  14. AOT_biomaps/AOT_Optic/Laser.py +70 -0
  15. AOT_biomaps/AOT_Optic/OpticEnums.py +17 -0
  16. AOT_biomaps/AOT_Optic/__init__.py +10 -0
  17. AOT_biomaps/AOT_Optic/_mainOptic.py +204 -0
  18. AOT_biomaps/AOT_Recon/AOT_Optimizers/DEPIERRO.py +191 -0
  19. AOT_biomaps/AOT_Recon/AOT_Optimizers/LS.py +106 -0
  20. AOT_biomaps/AOT_Recon/AOT_Optimizers/MAPEM.py +456 -0
  21. AOT_biomaps/AOT_Recon/AOT_Optimizers/MLEM.py +333 -0
  22. AOT_biomaps/AOT_Recon/AOT_Optimizers/PDHG.py +221 -0
  23. AOT_biomaps/AOT_Recon/AOT_Optimizers/__init__.py +5 -0
  24. AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/Huber.py +90 -0
  25. AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/Quadratic.py +86 -0
  26. AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/RelativeDifferences.py +59 -0
  27. AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/__init__.py +3 -0
  28. AOT_biomaps/AOT_Recon/AlgebraicRecon.py +1023 -0
  29. AOT_biomaps/AOT_Recon/AnalyticRecon.py +154 -0
  30. AOT_biomaps/AOT_Recon/BayesianRecon.py +230 -0
  31. AOT_biomaps/AOT_Recon/DeepLearningRecon.py +35 -0
  32. AOT_biomaps/AOT_Recon/PrimalDualRecon.py +210 -0
  33. AOT_biomaps/AOT_Recon/ReconEnums.py +375 -0
  34. AOT_biomaps/AOT_Recon/ReconTools.py +273 -0
  35. AOT_biomaps/AOT_Recon/__init__.py +11 -0
  36. AOT_biomaps/AOT_Recon/_mainRecon.py +288 -0
  37. AOT_biomaps/Config.py +95 -0
  38. AOT_biomaps/Settings.py +45 -13
  39. AOT_biomaps/__init__.py +271 -18
  40. aot_biomaps-2.9.233.dist-info/METADATA +22 -0
  41. aot_biomaps-2.9.233.dist-info/RECORD +43 -0
  42. {AOT_biomaps-2.1.3.dist-info → aot_biomaps-2.9.233.dist-info}/WHEEL +1 -1
  43. AOT_biomaps/AOT_Acoustic.py +0 -1881
  44. AOT_biomaps/AOT_Experiment.py +0 -541
  45. AOT_biomaps/AOT_Optic.py +0 -219
  46. AOT_biomaps/AOT_Reconstruction.py +0 -1416
  47. AOT_biomaps/config.py +0 -54
  48. AOT_biomaps-2.1.3.dist-info/METADATA +0 -20
  49. AOT_biomaps-2.1.3.dist-info/RECORD +0 -11
  50. {AOT_biomaps-2.1.3.dist-info → aot_biomaps-2.9.233.dist-info}/top_level.txt +0 -0
AOT_biomaps/config.py DELETED
@@ -1,54 +0,0 @@
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- import GPUtil
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-
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- class Config:
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- _instance = None
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-
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- def __new__(cls, *args, **kwargs):
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- if not cls._instance:
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- cls._instance = super(Config, cls).__new__(cls, *args, **kwargs)
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- return cls._instance
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-
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- def __init__(self):
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- if not hasattr(self, 'initialized'):
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- gpus = GPUtil.getGPUs()
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- if not gpus:
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- self.process = 'cpu'
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- self.bestGPU = None
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- print("No GPUs found. Defaulting to CPU.")
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- else:
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- self.process = 'gpu'
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- self.bestGPU = self.select_best_gpu()
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- print(f"GPUs found. Using {self.process.upper()} for processing.")
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-
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-
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- self.bestGPU = None
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- self.initialized = True
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-
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- def set_process(self, process):
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- if process not in ['cpu', 'gpu']:
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- raise ValueError("process must be 'cpu' or 'gpu'")
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- self.process = process
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-
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- def get_process(self):
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- return self.process
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-
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- def select_best_gpu(self):
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- gpus = GPUtil.getGPUs()
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-
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- best_gpu = 0
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- max_memory = 0
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-
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- for i, gpu in enumerate(gpus):
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- # Obtenez la mémoire totale et utilisée pour chaque GPU
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- total_memory = gpu.memoryTotal
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- used_memory = gpu.memoryUsed
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- available_memory = total_memory - used_memory
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-
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- # Sélectionnez le GPU avec le plus de mémoire disponible
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- if available_memory > max_memory:
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- max_memory = available_memory
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- best_gpu = i
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- print(f"Best GPU is GPU {best_gpu} with {max_memory:.2f} MB available.")
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- return best_gpu
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-
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- config = Config()
AOT_biomaps-2.1.3.dist-info/METADATA DELETED
@@ -1,20 +0,0 @@
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- Metadata-Version: 2.1
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- Name: AOT_biomaps
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- Version: 2.1.3
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- Summary: Acousto-Optic Tomography
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- Home-page: https://github.com/LucasDuclos/AcoustoOpticTomography
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- Author: Lucas Duclos
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- Author-email: lucas.duclos@universite-paris-saclay.fr
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- Requires-Dist: k-wave-python
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- Requires-Dist: setuptools
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- Requires-Dist: pyyaml
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- Requires-Dist: numba
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- Requires-Dist: tqdm
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- Requires-Dist: GPUtil
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- Requires-Dist: scikit-image
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- Provides-Extra: cpu
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- Provides-Extra: gpu
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- Requires-Dist: cupy; extra == "gpu"
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- Requires-Dist: nvidia-ml-py3; extra == "gpu"
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- Requires-Dist: torch; extra == "gpu"
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-
AOT_biomaps-2.1.3.dist-info/RECORD DELETED
@@ -1,11 +0,0 @@
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- AOT_biomaps/AOT_Acoustic.py,sha256=RLjEh5jqpTqRpEszKU0587KwStfRmbip2AGhON-sz48,82269
2
- AOT_biomaps/AOT_Experiment.py,sha256=-l_EMc-PnEY-w-2-5GUypMr0wuqkdP2qGCaiZyuLTwU,24016
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- AOT_biomaps/AOT_Optic.py,sha256=X7IhT8I4qbWtHrp6Rjg-lbbAl6kmaV9k3AVDz0y9-dc,8816
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- AOT_biomaps/AOT_Reconstruction.py,sha256=Ci0_aqVhlPOuLZrNUleGPP-MLnYLxiubsYpZojJUWAY,65683
5
- AOT_biomaps/Settings.py,sha256=vcxvrvHQuoZu5OQYp1Ub8GebISMedEQGasJaYp6k1Is,1541
6
- AOT_biomaps/__init__.py,sha256=MBlZFdaeo03xMjU89p7iB-GLs7GIFIq_pIBWk9EgpnY,461
7
- AOT_biomaps/config.py,sha256=NdROMVh42TMERBqgfrJWo0BZEcIn0416XK1ZZN5L5sY,1726
8
- AOT_biomaps-2.1.3.dist-info/METADATA,sha256=I6Lgv4z1kERS8jQ2TX2i9ToX96QJltq3ozbh_iAE71M,576
9
- AOT_biomaps-2.1.3.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
10
- AOT_biomaps-2.1.3.dist-info/top_level.txt,sha256=6STF-lT4kaAnBHJYCripmN5mZABoHjMuY689JdiDphk,12
11
- AOT_biomaps-2.1.3.dist-info/RECORD,,