AOT-biomaps 2.1.3__py3-none-any.whl → 2.9.233__py3-none-any.whl

AOT_biomaps/__init__.py

@@ -1,19 +1,272 @@
-from .AOT_Acoustic import *
-from .AOT_Optic import *
-from .AOT_Reconstruction import *
-from .AOT_Experiment import *
-from .config import config
-
-__version__ = '2.1.3'
-
-if config.get_process() == 'gpu':
-    __process__ = 'gpu'
-else:
-    __process__ = 'cpu'
-
-def initialize(process='cpu'):
-    config.set_process(process)
-    if process == 'gpu':
-        config.select_best_gpu()
-    print(f"Initialized with process: {config.get_process()}")
+import os
+import warnings
+import torch
+import ctypes
+import platform
+
+# --- Configuration de l'environnement pour libsz.so.2 ---
+def _configure_libsz_environment():
+    """Configure l'environnement pour trouver libsz.so.2."""
+    conda_prefix = os.environ.get('CONDA_PREFIX', '')
+    if not conda_prefix:
+        raise RuntimeError("CONDA_PREFIX not set. Activate your Conda environment first.")
+
+    if platform.system() == 'Windows':
+        libsz_name = 'libsz.dll'
+        env_var = 'PATH'
+        lib_path = os.path.join(conda_prefix, 'Library', 'bin')
+    else:  # Linux/Mac
+        libsz_name = 'libsz.so.2'
+        env_var = 'LD_LIBRARY_PATH'
+        lib_path = os.path.join(conda_prefix, 'lib')
+
+    libsz_path = os.path.join(lib_path, libsz_name)
+    if not os.path.exists(libsz_path):
+        raise RuntimeError(
+            f"{libsz_name} not found at {libsz_path}. "
+            f"Install it with: conda install -c conda-forge libaec"
+        )
+
+    # Charge la bibliothèque pour le processus courant
+    try:
+        ctypes.CDLL(libsz_path, mode=ctypes.RTLD_GLOBAL)
+    except OSError as e:
+        raise RuntimeError(f"Failed to load {libsz_name}: {e}")
+
+    # Met à jour LD_LIBRARY_PATH pour le processus courant ET tous les sous-processus
+    if env_var in os.environ:
+        os.environ[env_var] = f"{lib_path}{os.pathsep}{os.environ[env_var]}"
+    else:
+        os.environ[env_var] = lib_path
+
+
+_configure_libsz_environment()
+
+# --- Imports normaux ---
+# ACOUSTIC
+from .AOT_Acoustic._mainAcoustic import *
+from .AOT_Acoustic.AcousticEnums import *
+from .AOT_Acoustic.AcousticTools import *
+from .AOT_Acoustic.FocusedWave import *
+from .AOT_Acoustic.IrregularWave import *
+from .AOT_Acoustic.PlaneWave import *
+from .AOT_Acoustic.StructuredWave import *
+# EXPERIMENT
+from .AOT_Experiment._mainExperiment import *
+from .AOT_Experiment.Focus import *
+from .AOT_Experiment.Tomography import *
+# OPTIC
+from .AOT_Optic._mainOptic import *
+from .AOT_Optic.Absorber import *
+from .AOT_Optic.Laser import *
+from .AOT_Optic.OpticEnums import *
+# RECONSTRUCTION
+from .AOT_Recon._mainRecon import *
+from .AOT_Recon.AlgebraicRecon import *
+from .AOT_Recon.AnalyticRecon import *
+from .AOT_Recon.BayesianRecon import *
+from .AOT_Recon.DeepLearningRecon import *
+from .AOT_Recon.PrimalDualRecon import *
+from .AOT_Recon.ReconEnums import *
+from .AOT_Recon.ReconTools import *
+# OPTIMIZERS
+from .AOT_Recon.AOT_Optimizers.DEPIERRO import *
+from .AOT_Recon.AOT_Optimizers.MAPEM import *
+from .AOT_Recon.AOT_Optimizers.MLEM import *
+from .AOT_Recon.AOT_Optimizers.PDHG import *
+# POTENTIAL FUNCTIONS
+from .AOT_Recon.AOT_PotentialFunctions.Huber import *
+from .AOT_Recon.AOT_PotentialFunctions.Quadratic import *
+from .AOT_Recon.AOT_PotentialFunctions.RelativeDifferences import *
+# CONFIG AND SETTINGS
+from .Config import config
+from .Settings import *
+
+__version__ = '2.9.233'
+__process__ = config.get_process()
+
+def initialize(process=None):
+    """
+    Initialise ou modifie le backend de calcul (GPU/CPU).
+    Args:
+        process (str, optional): 'gpu' pour forcer le GPU, 'cpu' pour forcer le CPU.
+    Raises:
+        ValueError: Si `process` n'est pas 'cpu' ou 'gpu'.
+    """
+    global __process__
+    if process is not None:
+        if process not in ['cpu', 'gpu']:
+            raise ValueError("process must be 'cpu' or 'gpu'")
+        config.set_process(process)
+        __process__ = process
+
+    if __process__ == 'gpu':
+        try:
+            if not torch.cuda.is_available():
+                warnings.warn("GPU requested but PyTorch cannot access it. Falling back to CPU.", UserWarning)
+                config.set_process('cpu')
+                __process__ = 'cpu'
+        except Exception as e:
+            warnings.warn(f"PyTorch GPU check failed: {e}. Falling back to CPU.", UserWarning)
+            config.set_process('cpu')
+            __process__ = 'cpu'
+
+    return __process__
+
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aot_biomaps-2.9.233.dist-info/METADATA

@@ -0,0 +1,22 @@
+Metadata-Version: 2.4
+Name: AOT_biomaps
+Version: 2.9.233
+Summary: Acousto-Optic Tomography
+Home-page: https://github.com/LucasDuclos/AcoustoOpticTomography
+Author: Lucas Duclos
+Author-email: lucas.duclos@universite-paris-saclay.fr
+Requires-Dist: ipykernel==6.30.1
+Requires-Dist: k-wave-python==0.3.5
+Requires-Dist: setuptools==75.1.0
+Requires-Dist: pyyaml==6.0.2
+Requires-Dist: numba==0.61.2
+Requires-Dist: tqdm==4.67.1
+Requires-Dist: nvidia-ml-py3==7.352.0
+Requires-Dist: numpy==1.26.4
+Requires-Dist: torch==2.7.0
+Requires-Dist: scipy==1.13.1
+Dynamic: author
+Dynamic: author-email
+Dynamic: home-page
+Dynamic: requires-dist
+Dynamic: summary

aot_biomaps-2.9.233.dist-info/RECORD

@@ -0,0 +1,43 @@
+AOT_biomaps/Config.py,sha256=ghEOP1n8aO1pR-su13wMeAZAxZRfry5hH67NbtZ8SqI,3614
+AOT_biomaps/Settings.py,sha256=v8fPhnvvcfBJP29m1RLOTEr3jndGLGwbUiORXmsj2Bo,2853
+AOT_biomaps/__init__.py,sha256=mGXdd1sOEQC0Lvuyn1L1Gw7qSAxPsfWxrDcbUjgFwtg,4336
+AOT_biomaps/AOT_Acoustic/AcousticEnums.py,sha256=s5kXa6jKzbS4btwbubrVcynLOr0yg5tth5vL_FGfbMk,1802
+AOT_biomaps/AOT_Acoustic/AcousticTools.py,sha256=al7xXKMY5e-qQQ7nrQVPVAmqYiB320OluNlY6ti8iKc,7539
+AOT_biomaps/AOT_Acoustic/FocusedWave.py,sha256=3kGKKDx_3Msy5COYqIwzROPORGWvNjw8UsDanBfkMXE,11037
+AOT_biomaps/AOT_Acoustic/IrregularWave.py,sha256=yZhtxkR6zlciRcEpdTR0BAhvgQl40XHKFaF8f4VXarE,3035
+AOT_biomaps/AOT_Acoustic/PlaneWave.py,sha256=xza-rj5AUWDecLkGDxRcULrwZVWeBvGnEP2d51TyR04,1447
+AOT_biomaps/AOT_Acoustic/StructuredWave.py,sha256=jTLVlOhYLWJb5MxZPxhq3OFVlz2McoyMPBmfLvnekDU,18209
+AOT_biomaps/AOT_Acoustic/__init__.py,sha256=t9M2rRqa_L9pk7W2FeELTkHEMuP4DBr4gBRldMqsQbg,491
+AOT_biomaps/AOT_Acoustic/_mainAcoustic.py,sha256=RdmhRF1i0KAlpsP7_wnZ7F4J27br3eUc4XR91Qq7C64,44158
+AOT_biomaps/AOT_Experiment/Focus.py,sha256=B2nBawmv-NG2AWJx9zgQ8GlN6aFB9FwTSqX-M-phKXg,3193
+AOT_biomaps/AOT_Experiment/Tomography.py,sha256=Ri83b4GMrxJO60qWsK9JInS9a7HU2Q8uqpjD3Xkl9OY,24488
+AOT_biomaps/AOT_Experiment/__init__.py,sha256=H9zMLeBLA6uhbaHohAa-2u5mDDxqJi8oE5c6tShdQp8,308
+AOT_biomaps/AOT_Experiment/_mainExperiment.py,sha256=zSfuNrsz7nhiKrGIdK6CAXjlI2T6qYC5-JXHFgPNzhc,24674
+AOT_biomaps/AOT_Optic/Absorber.py,sha256=jEodzRy7gkEH-wbazVasRQiri0dU16BfapmR-qnTSvM,867
+AOT_biomaps/AOT_Optic/Laser.py,sha256=uzQwxswjU0kZWix3CmZLoWmhsBa3VhN27STprNv-xB8,2986
+AOT_biomaps/AOT_Optic/OpticEnums.py,sha256=b349_JyjHqQohmjK4Wke-A_HLGaqb3_BKbyUqFC4jxY,499
+AOT_biomaps/AOT_Optic/__init__.py,sha256=HSUVhfz0NzwHHZZ9KP9Xyfu33IgP_rYJX86J-gEROlo,321
+AOT_biomaps/AOT_Optic/_mainOptic.py,sha256=Wk63CcgWbU-ygMfjNK80islaUbGGJpTXgZY3_C2KQNY,8179
+AOT_biomaps/AOT_Recon/AlgebraicRecon.py,sha256=G3jET_uLMkaMuAKWeMZewU2lXPyPaXCHrehCRQfj2qs,49051
+AOT_biomaps/AOT_Recon/AnalyticRecon.py,sha256=vjeTUnaZrtnLHnx6goseeJsd165KbSugQYwUXJFXapU,7596
+AOT_biomaps/AOT_Recon/BayesianRecon.py,sha256=RnnPa-tTcvirwiNPnCRZnSM4NWeEEltYET-piBbp34g,12671
+AOT_biomaps/AOT_Recon/DeepLearningRecon.py,sha256=RfVcEsi4GeGqJn0_SPxwQPQx6IQjin79WKh2UarMRLI,1383
+AOT_biomaps/AOT_Recon/PrimalDualRecon.py,sha256=-7dqUxKXbHt7yR1I1kGcu1TOXn05ik6QoDDsuM0QvNU,10310
+AOT_biomaps/AOT_Recon/ReconEnums.py,sha256=wKksIx_xGgGOq0DqFpMTjbnjbaneZhTKup2Z-3PhC5o,19077
+AOT_biomaps/AOT_Recon/ReconTools.py,sha256=ApVZgztymdwuhbvoxdozo7oi3xyyZWxVuhKbzekuNBs,10636
+AOT_biomaps/AOT_Recon/__init__.py,sha256=LDbNpsjS8_TJrXMKzkpzSAj5trVuCW57AWQaJBrzd0I,244
+AOT_biomaps/AOT_Recon/_mainRecon.py,sha256=6yMQxj3IzBaicZbQlMtPh37E00GT1088__PGNCNPc4k,13217
+AOT_biomaps/AOT_Recon/AOT_Optimizers/DEPIERRO.py,sha256=qA1n722GLQJH3V8HcLr5q_GxEwBS_NRlIT3E6JZk-Ag,9479
+AOT_biomaps/AOT_Recon/AOT_Optimizers/LS.py,sha256=N7v1xN9I-adIe3c20LN9Drc4-fBSLc9SEmJS8B3Zmag,4343
+AOT_biomaps/AOT_Recon/AOT_Optimizers/MAPEM.py,sha256=vQLCB0L4FSXJKn2_6kdIdWrI6WZ82KuqUh7CSqBGVuo,25766
+AOT_biomaps/AOT_Recon/AOT_Optimizers/MLEM.py,sha256=TFyL4UNWmHkEPyjfutc5j_CsBrph675rEOGkIEFc_T4,13788
+AOT_biomaps/AOT_Recon/AOT_Optimizers/PDHG.py,sha256=5w4klYKAct9_gnlyocIiJfDrQUdz_VhXQVSpfjrjvNU,7927
+AOT_biomaps/AOT_Recon/AOT_Optimizers/__init__.py,sha256=tNGVulINaqQZzcs5cvCMAT5ypGdoFWRnxtl9y7ePECk,106
+AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/Huber.py,sha256=dRd1t5OBag_gVmfji3L0QrA1GJ_702LcCkLH32Bot0M,3285
+AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/Quadratic.py,sha256=wTbzcXxMdEl9ReEXrL43DOJQecokBwJYU_s2kQUASZY,2545
+AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/RelativeDifferences.py,sha256=ZlWaKsNPCMfy4fWxYFT2pSoKMbysQkJH4N1WbbWncq4,2493
+AOT_biomaps/AOT_Recon/AOT_PotentialFunctions/__init__.py,sha256=RwrJdLOFbAFBFnRxo5xdlOyeZgtQRDaRWDN9-uCGUiY,84
+aot_biomaps-2.9.233.dist-info/METADATA,sha256=d5LWlR-zGNLI0gnyEC3Jbq_5b3KLPo5pn1trpc_LvWg,663
+aot_biomaps-2.9.233.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+aot_biomaps-2.9.233.dist-info/top_level.txt,sha256=6STF-lT4kaAnBHJYCripmN5mZABoHjMuY689JdiDphk,12
+aot_biomaps-2.9.233.dist-info/RECORD,,

{AOT_biomaps-2.1.3.dist-info → aot_biomaps-2.9.233.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.1.0)
+Generator: setuptools (80.9.0)
 Root-Is-Purelib: true
 Tag: py3-none-any