wuepgg3-track 3.0.4 → 4.0.1

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Files changed (64) hide show
  1. package/dist/{SharedSystems-D2-L-AEG.mjs → SharedSystems-C25A8QWM.mjs} +675 -433
  2. package/dist/{WebGLRenderer-0nbxwc6U.mjs → WebGLRenderer-5GDaDku_.mjs} +417 -382
  3. package/dist/{WebGPURenderer-DWuXep8H.mjs → WebGPURenderer-DPF_CZ2D.mjs} +277 -258
  4. package/dist/{browserAll-C-dLabXl.mjs → browserAll-BNzjEqpL.mjs} +2 -2
  5. package/dist/{colorToUniform-DQmiMhES.mjs → colorToUniform-C6ntO3i9.mjs} +9 -8
  6. package/dist/components/GenomeView/TrackComponents/DynseqComponents/DynseqTrackComponents.d.ts +3 -4
  7. package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/GenomeAlignComponents.d.ts +3 -1
  8. package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/HorizontalFragment.d.ts +1 -0
  9. package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/MultiAlignmentViewCalculator.d.ts +1 -0
  10. package/dist/components/GenomeView/TrackComponents/GroupedTrackManager.d.ts +3 -0
  11. package/dist/components/GenomeView/TrackComponents/InteractionComponents/DynamicInteractionTrackComponents.d.ts +59 -0
  12. package/dist/components/GenomeView/TrackComponents/InteractionComponents/InteractionTrackComponent.d.ts +6 -16
  13. package/dist/components/GenomeView/TrackComponents/MethylcComponents/MethylCTrackComputation.d.ts +6 -14
  14. package/dist/components/GenomeView/TrackComponents/QBedComponents/QBedTrackComponents.d.ts +10 -27
  15. package/dist/components/GenomeView/TrackComponents/RulerComponents/RulerComponent.d.ts +1 -1
  16. package/dist/components/GenomeView/TrackComponents/VcfComponents/Vcf.d.ts +1 -0
  17. package/dist/components/GenomeView/TrackComponents/VcfComponents/VcfTrack.d.ts +6 -25
  18. package/dist/components/GenomeView/TrackComponents/bedComponents/DynamicBedTrackComponents.d.ts +1 -0
  19. package/dist/components/GenomeView/TrackComponents/bedComponents/FiberTrackComponent.d.ts +5 -40
  20. package/dist/components/GenomeView/TrackComponents/commonComponents/HoverToolTips/HoverToolTip.d.ts +5 -0
  21. package/dist/components/GenomeView/TrackComponents/commonComponents/OutsideClickDetector.d.ts +1 -1
  22. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/DynamicNumericalTrack.d.ts +1 -0
  23. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/DynamicplotTrackComponent.d.ts +1 -0
  24. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/MatplotTrackComponent.d.ts +1 -1
  25. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/NumericalAggregator.d.ts +2 -1
  26. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/NumericalTrack.d.ts +3 -1
  27. package/dist/components/GenomeView/TrackComponents/commonComponents/stats/BoxplotTrackComponents.d.ts +4 -38
  28. package/dist/components/GenomeView/TrackComponents/displayModeComponentMap.d.ts +1 -1
  29. package/dist/genome-hub/GenomeSerializer.d.ts +1 -1
  30. package/dist/genome-hub/genome-schema.d.ts +1 -2
  31. package/dist/getLocalData/LocalBigSource.d.ts +47 -0
  32. package/dist/getRemoteData/BigSourceWorker.d.ts +47 -0
  33. package/dist/getRemoteData/BigSourceWorkerGmod.d.ts +10 -0
  34. package/dist/getRemoteData/VcfSource.d.ts +9 -0
  35. package/dist/getRemoteData/tabixSource.d.ts +18 -0
  36. package/dist/getRemoteData/vendor/bbi-js/main/bigwig.d.ts +1 -0
  37. package/dist/getRemoteData/vendor/bbi-js/utils/bin.d.ts +20 -0
  38. package/dist/getRemoteData/vendor/bbi-js/utils/das.d.ts +6 -0
  39. package/dist/getRemoteData/vendor/bbi-js/utils/jszlib.d.ts +1 -0
  40. package/dist/getRemoteData/vendor/bbi-js/utils/sha1.d.ts +1 -0
  41. package/dist/getRemoteData/vendor/bbi-js/utils/spans.d.ts +13 -0
  42. package/dist/{index-DryYmDPe.mjs → index-BjfzAHgP.mjs} +63585 -64977
  43. package/dist/index.es.js +11 -11
  44. package/dist/index.umd.js +243 -231
  45. package/dist/{init-D8gtYsaQ.mjs → init-B9EV4EW9.mjs} +370 -355
  46. package/dist/models/FeatureAggregator.d.ts +3 -4
  47. package/dist/models/FeatureArranger.d.ts +7 -1
  48. package/dist/models/NavigationContext.d.ts +1 -0
  49. package/dist/models/TrackModel.d.ts +2 -0
  50. package/dist/models/genomes/allGenomes.d.ts +20 -0
  51. package/dist/models/genomes/mCalJa1.2.pat.X/mCalJa1.2.pat.X.d.ts +17 -0
  52. package/dist/models/getXSpan/FeaturePlacer.d.ts +2 -9
  53. package/dist/models/trackModels/trackProps.d.ts +1 -0
  54. package/dist/style.css +1 -1
  55. package/dist/track-container/index.d.ts +1 -1
  56. package/dist/trackConfigs/config-menu-components.tsx/ColorConfig.d.ts +1 -0
  57. package/dist/trackConfigs/config-menu-components.tsx/DownsamplingConfig.d.ts +8 -0
  58. package/dist/types/track-container.d.ts +5 -0
  59. package/dist/webworkerAll-DBeEkdnk.mjs +2 -0
  60. package/package.json +2 -4
  61. package/dist/components/GenomeView/TrackComponents/CommonTrackStateChangeFunctions.tsx/createNewTrackState.d.ts +0 -18
  62. package/dist/components/GenomeView/TrackComponents/CommonTrackStateChangeFunctions.tsx/getDataAfterConfigChange.d.ts +0 -11
  63. package/dist/components/testCustomGenome.d.ts +0 -505
  64. package/dist/webworkerAll-BYF_bwOo.mjs +0 -2
@@ -1,5 +1,5 @@
1
- import { T as A, U as Z, P as g, r as te, E as b, b as ie, w as y, e as w, C as V } from "./index-DryYmDPe.mjs";
2
- import "./init-D8gtYsaQ.mjs";
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+ import { T as A, U as Z, P as g, r as te, E as b, b as ie, w as y, e as w, C as V } from "./index-BjfzAHgP.mjs";
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+ import "./init-B9EV4EW9.mjs";
3
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  class q {
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  constructor(e) {
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  this._lastTransform = "", this._observer = null, this._tickerAttached = !1, this.updateTranslation = () => {
@@ -1,4 +1,4 @@
1
- import { S as M, G as x, a as F } from "./index-DryYmDPe.mjs";
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+ import { S as M, G as x, a as F } from "./index-BjfzAHgP.mjs";
2
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  const T = {
3
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  normal: 0,
4
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  add: 1,
@@ -135,8 +135,8 @@ const p = class f extends M {
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  * @param output - The target to output to.
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  * @param clearMode - Should the output be cleared before rendering to it
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  */
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- apply(t, e, i, r) {
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- t.applyFilter(this, e, i, r);
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+ apply(t, e, s, r) {
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+ t.applyFilter(this, e, s, r);
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  }
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  /**
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  * Get the blend mode of the filter.
@@ -155,9 +155,9 @@ const p = class f extends M {
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  * @returns A shiny new PixiJS filter!
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  */
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  static from(t) {
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- const { gpu: e, gl: i, ...r } = t;
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+ const { gpu: e, gl: s, ...r } = t;
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  let m, g;
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- return e && (m = x.from(e)), i && (g = F.from(i)), new f({
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+ return e && (m = x.from(e)), s && (g = F.from(s)), new f({
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  gpuProgram: m,
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  glProgram: g,
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  ...r
@@ -257,11 +257,12 @@ class w {
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  this.renderable = null, this.texture = null, this._batcher = null, this._batch = null, this.bounds = null;
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  }
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  destroy() {
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+ this.reset();
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  }
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  }
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- function R(s, t, e) {
263
- const i = (s >> 24 & 255) / 255;
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- t[e++] = (s & 255) / 255 * i, t[e++] = (s >> 8 & 255) / 255 * i, t[e++] = (s >> 16 & 255) / 255 * i, t[e++] = i;
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+ function R(i, t, e) {
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+ const s = (i >> 24 & 255) / 255;
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+ t[e++] = (i & 255) / 255 * s, t[e++] = (i >> 8 & 255) / 255 * s, t[e++] = (i >> 16 & 255) / 255 * s, t[e++] = s;
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  }
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  export {
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  w as B,
@@ -33,18 +33,17 @@ interface DynseqTrackProps {
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  end: number;
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  };
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  forceSvg: boolean;
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- getNumLegend: any;
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+ updatedLegend: any;
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  basesByPixel: number;
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  genomeConfig: any;
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  xvaluesData: any;
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+ dataIdx: number;
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+ initialLoad: boolean;
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  }
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  declare class DynseqTrackComponents extends PureComponent<DynseqTrackProps> {
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- xToValue: Array<any> | null;
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- xToValue2: Array<any> | null;
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  allValues: Array<any>;
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  drawHeights: Array<any>;
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  scales: any;
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- hasReverse: boolean;
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  constructor(props: DynseqTrackProps);
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  computeScales: (xToValue: number[], xToValue2: number[], height: number) => {
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  valueToHeight: import("d3-scale").ScaleLinear<number, number, never>;
@@ -41,5 +41,7 @@ export declare function renderRoughStrand(strand: string, topY: number, viewWind
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  }, isPrimary: boolean): any;
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  export declare function renderRoughAlignment(placement: {
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  [key: string]: any;
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- }, plotReverse: boolean, roughHeight: number, targetGenome: any, queryGenome: any): any;
44
+ }, plotReverse: boolean, roughHeight: number, targetGenome: any, queryGenome: any, options: {
45
+ [key: string]: any;
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+ }): any;
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  export {};
@@ -12,6 +12,7 @@ interface HorizontalFragmentProps {
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  children?: React.ReactNode;
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  rectHeight: number;
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  relativeX: number;
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+ windowScrollY: number;
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  }
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  declare class HorizontalFragment extends Component<HorizontalFragmentProps> {
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  constructor(props: HorizontalFragmentProps);
@@ -75,6 +75,7 @@ export declare class MultiAlignmentViewCalculator {
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  refineRecordsArray(recordsArray: RecordsObj[], visData: ViewExpansion): RefinedObj;
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  alignFine(id: any, query: string, records: AlignmentRecord[], oldVisData: ViewExpansion, visData: ViewExpansion, allGaps: Gap[]): Alignment;
77
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  /**
78
+ *
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  * Groups and merges alignment records based on their proximity in the query (secondary) genome. Then, calculates
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  * draw positions for all records.
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  *
@@ -33,6 +33,9 @@ export declare class GroupedTrackManager {
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  * @returns list of groups found in the track list, their data, and their original indicies
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  */
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  aggregator: NumericalAggregator;
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+ dynseqAggregator: (data: any[], viewRegion: any, width: number, aggregatorId: string) => any;
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+ aggregateRecords: (data: any[], viewRegion: any, width: number) => any;
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+ aggregateFeaturesMatplot: (data: any, viewRegion: any, width: any, aggregatorId: any) => any;
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  constructor();
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  getGroupScale(tracks: TrackModel[], trackData: any, width: number, viewWindow: OpenInterval, dataIdx: number, trackFetchedDataCache: any): {
38
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  [groupId: number]: {
@@ -0,0 +1,59 @@
1
+ import React, { MouseEvent } from "react";
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+ import { FeaturePlacer } from "../../../../models/getXSpan/FeaturePlacer";
3
+ import { GenomeInteraction } from "../../../../getRemoteData/GenomeInteraction";
4
+ import { ScaleChoices } from "../../../../models/ScaleChoices";
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+ import { DynamicInteractionDisplayMode } from "../../../../trackConfigs/config-menu-models.tsx/DisplayModes";
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+ interface DynamicInteractionTrackComponentsProps {
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+ data: GenomeInteraction[];
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+ options: {
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+ color: string;
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+ color2?: string;
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+ backgroundColor?: string;
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+ binSize?: number;
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+ scoreScale?: string;
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+ scoreMax?: number;
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+ scoreMin?: number;
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+ height: number;
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+ playing?: boolean;
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+ speed?: number[];
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+ lineWidth?: number;
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+ displayMode: DynamicInteractionDisplayMode;
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+ dynamicColors?: any[];
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+ useDynamicColors?: boolean;
23
+ };
24
+ viewer3dNumFrames?: any;
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+ trackModel: any;
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+ visRegion: any;
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+ width: number;
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+ viewWindow: any;
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+ updatedLegend?: any;
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+ dataIdx: number;
31
+ }
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+ export declare const DEFAULT_OPTIONS: {
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+ color: string;
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+ color2: string;
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+ backgroundColor: string;
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+ scoreScale: ScaleChoices;
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+ scoreMax: number;
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+ scoreMin: number;
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+ height: number;
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+ playing: boolean;
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+ speed: number[];
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+ lineWidth: number;
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+ useDynamicColors: boolean;
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+ dynamicColors: any[];
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+ displayMode: DynamicInteractionDisplayMode;
46
+ };
47
+ declare class DynamicInteractionTrackComponents extends React.PureComponent<DynamicInteractionTrackComponentsProps> {
48
+ featurePlacer: FeaturePlacer;
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+ scales: any;
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+ constructor(props: DynamicInteractionTrackComponentsProps);
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+ computeScale: () => {
52
+ opacityScale: import("d3-scale").ScaleLinear<number, number, never>;
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+ min: any;
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+ max: any;
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+ };
56
+ showTooltip(event: MouseEvent, interaction: GenomeInteraction): void;
57
+ render(): any;
58
+ }
59
+ export default DynamicInteractionTrackComponents;
@@ -1,6 +1,5 @@
1
- import React, { JSX } from "react";
1
+ import React from "react";
2
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  import { InteractionDisplayMode } from "../../../../trackConfigs/config-menu-models.tsx/DisplayModes";
3
- import { FeaturePlacer } from "../../../../models/getXSpan/FeaturePlacer";
4
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  import { GenomeInteraction } from "../../../../getRemoteData/GenomeInteraction";
5
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  import { ScaleChoices } from "../../../../models/ScaleChoices";
6
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  import TrackModel from "../../../../models/TrackModel";
@@ -28,7 +27,9 @@ interface InteractionTrackProps {
28
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  bothAnchorsInView?: boolean;
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  clampHeight?: boolean;
30
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  getNumLegend?: any;
30
+ forceSvg?: boolean;
31
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  };
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+ dataIdx?: number;
32
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  forceSvg?: boolean;
33
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  getBeamRefs?: any;
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  onSetAnchors3d?: any;
@@ -37,7 +38,8 @@ interface InteractionTrackProps {
37
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  width: number;
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  viewWindow: OpenInterval;
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  visRegion: DisplayedRegionModel;
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- getNumLegend: any;
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+ updatedLegend: any;
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+ initialLoad?: boolean;
41
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  }
42
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  export declare const DEFAULT_OPTIONS: {
43
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  color: string;
@@ -58,17 +60,5 @@ export declare const DEFAULT_OPTIONS: {
58
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  binSize: number;
59
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  normalization: NormalizationMode;
60
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  };
61
- declare class InteractionTrackComponent extends React.PureComponent<InteractionTrackProps, {}> {
62
- featurePlacer: FeaturePlacer;
63
- scales: any;
64
- constructor(props: InteractionTrackProps);
65
- computeScale: () => {
66
- opacityScale: import("d3-scale").ScaleLinear<number, number, never>;
67
- heightScale: import("d3-scale").ScaleLinear<number, number, never>;
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- min: any;
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- max: any;
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- };
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- filterData: (data: GenomeInteraction[]) => GenomeInteraction[];
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- render(): JSX.Element;
73
- }
63
+ declare const InteractionTrackComponent: React.FC<InteractionTrackProps>;
74
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  export default InteractionTrackComponent;
@@ -1,4 +1,4 @@
1
- import { PureComponent } from "react";
1
+ import React from "react";
2
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  export declare const DEFAULT_OPTIONS: {
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  height: number;
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  isCombineStrands: boolean;
@@ -35,6 +35,7 @@ interface MethylCTrackProps {
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  depthFilter: any;
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  maxMethyl: any;
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  forceSvg: boolean;
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+ usePrimaryNav: boolean;
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  };
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  isLoading?: boolean;
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  error?: any;
@@ -46,19 +47,10 @@ interface MethylCTrackProps {
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  end: number;
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  };
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  forceSvg: boolean;
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- getNumLegend: any;
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+ updatedLegend: any;
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  xvaluesData?: any;
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+ initialLoad: boolean;
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+ dataIdx: number;
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  }
52
- declare class MethylCTrack extends PureComponent<MethylCTrackProps> {
53
- aggregatedRecords: any[];
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- scales: any;
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- constructor(props: MethylCTrackProps);
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- aggregateRecords: (data: any[], viewRegion: any, width: number) => any[];
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- computeScales: (xMap: any[], height: number, maxMethyl: number) => {
58
- methylToY: import("d3-scale").ScaleLinear<number, number, never>;
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- depthToY: import("d3-scale").ScaleLinear<number, number, never>;
60
- };
61
- renderVisualizer(): any;
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- render(): any;
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- }
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+ declare const MethylCTrack: React.FC<MethylCTrackProps>;
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  export default MethylCTrack;
@@ -15,16 +15,13 @@ type Options = {
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  markerSize: number;
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  showHorizontalLine: boolean;
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  horizontalLineValue: number;
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- };
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- type QBed = {
20
- value: number;
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- strand: string;
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- annotation: string;
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- relativeX?: number;
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- relativeY?: number;
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+ packageVersion?: boolean;
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+ label?: string;
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+ usePrimaryNav?: boolean;
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+ forceSvg?: boolean;
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  };
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  type QBedTrackProps = {
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- data: QBed[];
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+ data: Array<any>;
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  options: Options;
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  isLoading: boolean;
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  error: any;
@@ -33,7 +30,10 @@ type QBedTrackProps = {
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  trackModel: any;
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  viewWindow: any;
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  forceSvg: boolean;
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- getNumLegend: any;
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+ updatedLegend: any;
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+ xvaluesData?: Array<any>;
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+ dataIdx: number;
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+ initialLoad: boolean;
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  };
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  export declare const DEFAULT_OPTIONS: {
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  height: number;
@@ -53,22 +53,5 @@ export declare const DEFAULT_OPTIONS: {
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  /**
54
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  * Track specialized in showing qBED data.
55
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  */
56
- declare class QBedTrackComponents extends React.PureComponent<QBedTrackProps> {
57
- private xToValue;
58
- private scales;
59
- constructor(props: QBedTrackProps);
60
- aggregateFeatures(data: Array<any>, viewRegion: any, width: number): [any[], any[]];
61
- computeScales(xToValue: any, height: number): {
62
- valueToY: import("d3-scale").ScaleLinear<number, number, never>;
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- min: number;
64
- max: any;
65
- };
66
- renderTooltip(relativeX: number, relativeY: number): any;
67
- formatCards: (quanta: QBed[]) => any;
68
- nearestCards: (quanta: QBed[], relativeX: number, relativeY: number, radius: number) => QBed[];
69
- shuffleArray: (a: any[]) => any[];
70
- randomCards: (quanta: any[], n: number) => any[];
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- downSample(xToValue: any[], sampleSize: number): any[];
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- render(): any;
73
- }
56
+ declare const QBedTrackComponents: React.FC<QBedTrackProps>;
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  export default QBedTrackComponents;
@@ -9,7 +9,7 @@ interface RulerComponentProps {
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  genomeConfig?: any;
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  trackModel: TrackModel;
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  selectedRegion: DisplayedRegionModel;
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- getNumLegend: any;
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+ updatedLegend: any;
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  options: any;
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  viewWindow: any;
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  }
@@ -17,6 +17,7 @@ export interface Variant {
17
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  }
18
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  declare class Vcf extends Feature {
19
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  variant: Variant;
20
+ samples: any;
20
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  constructor(variant: any);
21
22
  }
22
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  export default Vcf;
@@ -1,5 +1,4 @@
1
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  import React from "react";
2
- import { PlacedFeatureGroup } from "../../../../models/FeatureArranger";
3
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  import OpenInterval from "../../../../models/OpenInterval";
4
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  import DisplayedRegionModel from "../../../../models/DisplayedRegionModel";
5
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  import Vcf from "./Vcf";
@@ -28,6 +27,8 @@ interface VcfTrackProps {
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  hiddenPixels?: number;
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  colorScaleKey: string;
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  displayMode?: string;
30
+ usePrimaryNav?: boolean;
31
+ forceSvg?: boolean;
31
32
  };
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  renderTooltip: any;
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  svgHeight: any;
@@ -36,34 +37,14 @@ interface VcfTrackProps {
36
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  getGenePadding: any;
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  getHeight: any;
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  xvaluesData?: any;
39
- getNumLegend: any;
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+ forceSvg?: boolean;
41
+ dataIdx: number;
42
+ initialLoad?: boolean;
40
43
  }
41
44
  /**
42
45
  * Track component for VCF annotations.
43
46
  *
44
47
  * @author Daofeng Li
45
48
  */
46
- declare class VcfTrack extends React.Component<VcfTrackProps> {
47
- static displayName: string;
48
- scales: any;
49
- constructor(props: VcfTrackProps);
50
- computeColorScales: (data: Vcf[], colorKey: string, lowValueColor: any, highValueColor: any) => import("d3-scale").ScaleLinear<number, number, never>;
51
- /**
52
- * Renders the tooltip for a feature.
53
- *
54
- * @param {React.MouseEvent} event - mouse event that triggered the tooltip request
55
- * @param {Vcf} vcf - vcf for which to display details
56
- */
57
- /**
58
- * Renders one annotation.
59
- *
60
- * @param {PlacedFeature} - feature and drawing info
61
- * @param {number} y - y coordinate to render the annotation
62
- * @param {boolean} isLastRow - whether the annotation is assigned to the last configured row
63
- * @param {number} index - iteration index
64
- * @return {JSX.Element} element visualizing the feature
65
- */
66
- renderAnnotation(placedGroup: PlacedFeatureGroup, y: number, isLastRow: boolean, index: number): any[];
67
- render(): any;
68
- }
49
+ declare const VcfTrack: React.FC<VcfTrackProps>;
69
50
  export default VcfTrack;
@@ -23,6 +23,7 @@ interface DynamicBedTrackProps {
23
23
  trackModel: any;
24
24
  svgHeight?: any;
25
25
  updatedLegend?: any;
26
+ dataIdx: number;
26
27
  }
27
28
  declare const DynamicBedTrackComponents: React.FC<DynamicBedTrackProps>;
28
29
  export default DynamicBedTrackComponents;
@@ -16,10 +16,12 @@ interface FiberTrackProps {
16
16
  displayMode: FiberDisplayModes;
17
17
  hideMinimalItems: boolean;
18
18
  pixelsPadding?: number;
19
+ packageVersion?: boolean;
20
+ forceSvg?: boolean;
21
+ usePrimaryNav?: boolean;
19
22
  };
20
23
  forceSvg?: boolean;
21
24
  visRegion: DisplayedRegionModel;
22
- getNumLegend: any;
23
25
  getAnnotationTrack: any;
24
26
  trackState: any;
25
27
  renderTooltip: any;
@@ -34,11 +36,7 @@ interface FiberTrackProps {
34
36
  ROW_HEIGHT: any;
35
37
  onClose: any;
36
38
  xvaluesData?: any;
37
- }
38
- interface AggregatedFiber {
39
- on: number;
40
- off: number;
41
- count: number;
39
+ dataIdx?: number;
42
40
  }
43
41
  export declare const DEFAULT_OPTIONS: {
44
42
  hiddenPixels: number;
@@ -56,38 +54,5 @@ export declare const DEFAULT_OPTIONS: {
56
54
  *
57
55
  * @author Daofeng Li
58
56
  */
59
- declare class FiberTrackComponent extends React.Component<FiberTrackProps> {
60
- static displayName: string;
61
- xMap: AggregatedFiber[] | undefined;
62
- scales: any;
63
- constructor(props: FiberTrackProps);
64
- paddingFunc: (feature: Fiber, xSpan: OpenInterval) => number;
65
- /**
66
- * Renders one annotation.
67
- *
68
- * @param {PlacedFeature} - feature and drawing info
69
- * @param {number} y - y coordinate to render the annotation
70
- * @param {boolean} isLastRow - whether the annotation is assigned to the last configured row
71
- * @param {number} index - iteration index
72
- * @return {JSX.Element} element visualizing the feature
73
- */
74
- /**
75
- *
76
- * @param data
77
- * @param viewRegion
78
- * @param width
79
- * @returns
80
- */
81
- aggregateFibers: (data: Fiber[], viewRegion: DisplayedRegionModel, width: number) => any[];
82
- computeScales: () => {
83
- pctToY: import("d3-scale").ScaleLinear<number, number, never>;
84
- countToY: import("d3-scale").ScaleLinear<number, number, never>;
85
- pcts: number[];
86
- maxPct: any;
87
- counts: number[];
88
- };
89
- renderTooltipContents: (x: number) => any;
90
- visualizer: () => any;
91
- render(): any;
92
- }
57
+ declare const FiberTrackComponent: React.FC<FiberTrackProps>;
93
58
  export default FiberTrackComponent;
@@ -9,6 +9,11 @@ export declare const getHoverTooltip: {
9
9
  }) => {
10
10
  toolTip: any;
11
11
  };
12
+ qbed: (dataObj: {
13
+ [key: string]: any;
14
+ }) => {
15
+ toolTip: any;
16
+ } | undefined;
12
17
  dbedgraph: (dataObj: {
13
18
  [key: string]: any;
14
19
  }) => {
@@ -1,6 +1,6 @@
1
1
  import React from "react";
2
2
  interface OutsideClickDetectorProps {
3
- onOutsideClick?: (event: MouseEvent) => void;
3
+ onOutsideClick?: () => void;
4
4
  innerRef?: (node: Node | null) => void;
5
5
  children: React.ReactNode;
6
6
  }
@@ -32,6 +32,7 @@ interface DynamicNumericalTrackProps {
32
32
  end: number;
33
33
  };
34
34
  updatedLegend?: any;
35
+ dataIdx: number;
35
36
  }
36
37
  declare const DynamicNumericalTrack: React.FC<DynamicNumericalTrackProps>;
37
38
  export default DynamicNumericalTrack;
@@ -43,6 +43,7 @@ interface DynamicplotTrackProps {
43
43
  trackModel: TrackModel;
44
44
  width: number;
45
45
  updatedLegend: any;
46
+ dataIdx: number;
46
47
  }
47
48
  interface DynamicplotTrackState {
48
49
  xToValue: number[][] | null;
@@ -23,7 +23,7 @@ interface MatplotTrackProps {
23
23
  viewRegion: any;
24
24
  width: any;
25
25
  forceSvg: any;
26
- getNumLegend: any;
26
+ updatedLegend?: any;
27
27
  xvaluesData?: any;
28
28
  }
29
29
  /**
@@ -1,4 +1,5 @@
1
1
  export declare class NumericalAggregator {
2
2
  constructor();
3
- xToValueMaker(data: any, viewRegion: any, width: any, options: any, viewWindow: any): any[];
3
+ aggregateFeatures(data: any, viewRegion: any, width: any, aggregatorId: any): unknown[][];
4
+ xToValueMaker(data: any, viewRegion: any, width: any, options: any): any[];
4
5
  }
@@ -12,8 +12,10 @@ interface NumericalTrackProps {
12
12
  viewRegion?: any;
13
13
  width?: any;
14
14
  forceSvg?: any;
15
- getNumLegend?: any;
16
15
  xvaluesData?: Array<any>;
16
+ dataIdx: number;
17
+ initialLoad: any;
18
+ updatedLegend?: any;
17
19
  }
18
20
  export declare const DEFAULT_OPTIONS: {
19
21
  aggregateMethod: string;
@@ -1,5 +1,4 @@
1
1
  import React from "react";
2
- import * as d3 from "d3";
3
2
  import TrackModel from "../../../../../models/TrackModel";
4
3
  import DisplayedRegionModel from "../../../../../models/DisplayedRegionModel";
5
4
  export declare const DEFAULT_OPTIONS: {
@@ -22,44 +21,11 @@ interface BoxplotTrackProps {
22
21
  options: any;
23
22
  forceSvg: boolean;
24
23
  viewWindow: any;
25
- getNumLegend: any;
26
- }
27
- declare class BoxplotTrackComponents extends React.PureComponent<BoxplotTrackProps> {
28
- xMap: {};
29
- xAlias: {};
30
- scales: any;
31
- constructor(props: any);
32
- /**
33
- * make a map for x to the start x of each window, used for tooltip
34
- * @param {number} width
35
- * @param {number} size
36
- * @returns
37
- */
38
- makeXalias: (width: any, sizeInput: any) => {};
39
- computeBoxStats: (features: any) => {
40
- q1: number | undefined;
41
- q3: number | undefined;
42
- median: number | undefined;
43
- min: number;
44
- max: number;
45
- count: any;
46
- } | null;
47
- aggregateFeatures(data: any, viewRegion: any, width: any, useCenter: any, windowSize: any): {};
48
- computeScales(xMap: any, xAlias: any, height: any): {
49
- valueToY: d3.ScaleLinear<number, number, never>;
50
- min: any;
51
- max: any;
52
- };
53
- /**
54
- * Renders the default tooltip that is displayed on hover.
55
- *
56
- * @param {number} relativeX - x coordinate of hover relative to the visualizer
57
- * @param {number} value -
58
- * @return {JSX.Element} tooltip to render
59
- */
60
- renderTooltip(relativeX: any): any;
61
- render(): any;
24
+ updatedLegend?: any;
25
+ dataIdx?: number;
26
+ initialLoad?: boolean;
62
27
  }
28
+ declare const BoxplotTrackComponents: React.FC<BoxplotTrackProps>;
63
29
  interface BoxplotProps {
64
30
  xMap: object;
65
31
  scales: any;
@@ -13,6 +13,6 @@ export declare function getDisplayModeFunction(drawData: {
13
13
  [key: string]: any;
14
14
  }): any;
15
15
  export declare const twoDataTypeTracks: {};
16
- export declare function formatDataByType(genesArr: any[], type: string): any[] | {
16
+ export declare function formatDataByType(genesArr: any[], type: string, reverse: any): any[] | {
17
17
  error: any;
18
18
  };
@@ -5,7 +5,7 @@ export default class GenomeSerializer {
5
5
  static deserialize(object: IGenome): GenomeConfig;
6
6
  static validateGenomeObject(object: any): {
7
7
  valid: boolean;
8
- errors: import("ajv").ErrorObject[] | null | undefined;
8
+ errors: import("ajv").ErrorObject<string, Record<string, any>, unknown>[] | null | undefined;
9
9
  } | {
10
10
  valid: boolean;
11
11
  errors?: undefined;
@@ -1,4 +1,3 @@
1
- import Ajv from 'ajv';
2
1
  export declare const genomeDataSchema: {
3
2
  type: string;
4
3
  required: string[];
@@ -191,7 +190,7 @@ export declare const genomeDataSchema: {
191
190
  };
192
191
  export declare function validateGenomeData(data: any): {
193
192
  valid: boolean;
194
- errors: Ajv.ErrorObject[] | null | undefined;
193
+ errors: import("ajv").ErrorObject<string, Record<string, any>, unknown>[] | null | undefined;
195
194
  } | {
196
195
  valid: boolean;
197
196
  errors?: undefined;