wuepgg3-track 3.0.4 → 4.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (64) hide show
  1. package/dist/{SharedSystems-D2-L-AEG.mjs → SharedSystems-C25A8QWM.mjs} +675 -433
  2. package/dist/{WebGLRenderer-0nbxwc6U.mjs → WebGLRenderer-5GDaDku_.mjs} +417 -382
  3. package/dist/{WebGPURenderer-DWuXep8H.mjs → WebGPURenderer-DPF_CZ2D.mjs} +277 -258
  4. package/dist/{browserAll-C-dLabXl.mjs → browserAll-BNzjEqpL.mjs} +2 -2
  5. package/dist/{colorToUniform-DQmiMhES.mjs → colorToUniform-C6ntO3i9.mjs} +9 -8
  6. package/dist/components/GenomeView/TrackComponents/DynseqComponents/DynseqTrackComponents.d.ts +3 -4
  7. package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/GenomeAlignComponents.d.ts +3 -1
  8. package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/HorizontalFragment.d.ts +1 -0
  9. package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/MultiAlignmentViewCalculator.d.ts +1 -0
  10. package/dist/components/GenomeView/TrackComponents/GroupedTrackManager.d.ts +3 -0
  11. package/dist/components/GenomeView/TrackComponents/InteractionComponents/DynamicInteractionTrackComponents.d.ts +59 -0
  12. package/dist/components/GenomeView/TrackComponents/InteractionComponents/InteractionTrackComponent.d.ts +6 -16
  13. package/dist/components/GenomeView/TrackComponents/MethylcComponents/MethylCTrackComputation.d.ts +6 -14
  14. package/dist/components/GenomeView/TrackComponents/QBedComponents/QBedTrackComponents.d.ts +10 -27
  15. package/dist/components/GenomeView/TrackComponents/RulerComponents/RulerComponent.d.ts +1 -1
  16. package/dist/components/GenomeView/TrackComponents/VcfComponents/Vcf.d.ts +1 -0
  17. package/dist/components/GenomeView/TrackComponents/VcfComponents/VcfTrack.d.ts +6 -25
  18. package/dist/components/GenomeView/TrackComponents/bedComponents/DynamicBedTrackComponents.d.ts +1 -0
  19. package/dist/components/GenomeView/TrackComponents/bedComponents/FiberTrackComponent.d.ts +5 -40
  20. package/dist/components/GenomeView/TrackComponents/commonComponents/HoverToolTips/HoverToolTip.d.ts +5 -0
  21. package/dist/components/GenomeView/TrackComponents/commonComponents/OutsideClickDetector.d.ts +1 -1
  22. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/DynamicNumericalTrack.d.ts +1 -0
  23. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/DynamicplotTrackComponent.d.ts +1 -0
  24. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/MatplotTrackComponent.d.ts +1 -1
  25. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/NumericalAggregator.d.ts +2 -1
  26. package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/NumericalTrack.d.ts +3 -1
  27. package/dist/components/GenomeView/TrackComponents/commonComponents/stats/BoxplotTrackComponents.d.ts +4 -38
  28. package/dist/components/GenomeView/TrackComponents/displayModeComponentMap.d.ts +1 -1
  29. package/dist/genome-hub/GenomeSerializer.d.ts +1 -1
  30. package/dist/genome-hub/genome-schema.d.ts +1 -2
  31. package/dist/getLocalData/LocalBigSource.d.ts +47 -0
  32. package/dist/getRemoteData/BigSourceWorker.d.ts +47 -0
  33. package/dist/getRemoteData/BigSourceWorkerGmod.d.ts +10 -0
  34. package/dist/getRemoteData/VcfSource.d.ts +9 -0
  35. package/dist/getRemoteData/tabixSource.d.ts +18 -0
  36. package/dist/getRemoteData/vendor/bbi-js/main/bigwig.d.ts +1 -0
  37. package/dist/getRemoteData/vendor/bbi-js/utils/bin.d.ts +20 -0
  38. package/dist/getRemoteData/vendor/bbi-js/utils/das.d.ts +6 -0
  39. package/dist/getRemoteData/vendor/bbi-js/utils/jszlib.d.ts +1 -0
  40. package/dist/getRemoteData/vendor/bbi-js/utils/sha1.d.ts +1 -0
  41. package/dist/getRemoteData/vendor/bbi-js/utils/spans.d.ts +13 -0
  42. package/dist/{index-DryYmDPe.mjs → index-BjfzAHgP.mjs} +63585 -64977
  43. package/dist/index.es.js +11 -11
  44. package/dist/index.umd.js +243 -231
  45. package/dist/{init-D8gtYsaQ.mjs → init-B9EV4EW9.mjs} +370 -355
  46. package/dist/models/FeatureAggregator.d.ts +3 -4
  47. package/dist/models/FeatureArranger.d.ts +7 -1
  48. package/dist/models/NavigationContext.d.ts +1 -0
  49. package/dist/models/TrackModel.d.ts +2 -0
  50. package/dist/models/genomes/allGenomes.d.ts +20 -0
  51. package/dist/models/genomes/mCalJa1.2.pat.X/mCalJa1.2.pat.X.d.ts +17 -0
  52. package/dist/models/getXSpan/FeaturePlacer.d.ts +2 -9
  53. package/dist/models/trackModels/trackProps.d.ts +1 -0
  54. package/dist/style.css +1 -1
  55. package/dist/track-container/index.d.ts +1 -1
  56. package/dist/trackConfigs/config-menu-components.tsx/ColorConfig.d.ts +1 -0
  57. package/dist/trackConfigs/config-menu-components.tsx/DownsamplingConfig.d.ts +8 -0
  58. package/dist/types/track-container.d.ts +5 -0
  59. package/dist/webworkerAll-DBeEkdnk.mjs +2 -0
  60. package/package.json +2 -4
  61. package/dist/components/GenomeView/TrackComponents/CommonTrackStateChangeFunctions.tsx/createNewTrackState.d.ts +0 -18
  62. package/dist/components/GenomeView/TrackComponents/CommonTrackStateChangeFunctions.tsx/getDataAfterConfigChange.d.ts +0 -11
  63. package/dist/components/testCustomGenome.d.ts +0 -505
  64. package/dist/webworkerAll-BYF_bwOo.mjs +0 -2
@@ -1,505 +0,0 @@
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- export declare const testCustomGenome: {
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- name: string;
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- id: string;
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- group: string;
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- chromosomes: {
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- name: string;
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- length: number;
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- }[];
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- cytobands: {
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- chr1: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr10: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr11: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr12: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr13: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr14: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr15: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr16: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr17: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr18: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr19: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr2: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr20: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr21: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr22: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr3: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr4: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr5: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr6: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr7: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr8: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chr9: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chrX: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- chrY: {
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- chrom: string;
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- chromStart: number;
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- chromEnd: number;
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- name: string;
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- gieStain: string;
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- }[];
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- };
179
- defaultRegion: string;
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- defaultTracks: ({
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- type: string;
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- name: string;
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- genome: string;
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- options: {
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- maxRows: number;
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- label: string;
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- };
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- metadata: {
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- "Track type": string;
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- };
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- label: string;
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- isSelected: boolean;
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- url: string;
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- fileObj: string;
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- files: never[];
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- tracks: never[];
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- isText: boolean;
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- textConfig: {};
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- apiConfig: {};
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- queryEndpoint: {};
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- } | {
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- type: string;
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- name: string;
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- url: string;
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- options: {
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- label: string;
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- maxRows?: undefined;
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- };
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- metadata: {
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- "Track type": string;
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- };
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- label: string;
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- isSelected: boolean;
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- fileObj: string;
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- files: never[];
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- tracks: never[];
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- isText: boolean;
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- textConfig: {};
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- apiConfig: {};
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- queryEndpoint: {};
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- genome?: undefined;
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- })[];
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- publicHubList: ({
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- collection: string;
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- name: string;
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- numTracks: number;
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- oldHubFormat: boolean;
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- url: string;
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- description?: undefined;
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- } | {
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- collection: string;
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- name: string;
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- numTracks: number;
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- oldHubFormat: boolean;
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- url: string;
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- description: {
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- "hub built by": string;
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- "total number of images": string;
239
- "hub built notes": string;
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- "hub built date"?: undefined;
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- };
242
- } | {
243
- collection: string;
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- name: string;
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- numTracks: number;
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- oldHubFormat: boolean;
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- description: string;
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- url: string;
249
- } | {
250
- collection: string;
251
- name: string;
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- numTracks: number;
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- oldHubFormat: boolean;
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- url: string;
255
- description: {
256
- "hub built by": string;
257
- "hub built date": string;
258
- "hub built notes": string;
259
- "total number of images"?: undefined;
260
- };
261
- })[];
262
- publicHubData: {
263
- "Encyclopedia of DNA Elements (ENCODE)": string;
264
- "Reference human epigenomes from Roadmap Epigenomics Consortium": string;
265
- "3D structures": string;
266
- "Image collection": string;
267
- };
268
- annotationTracks: {
269
- Ruler: {
270
- type: string;
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- label: string;
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- name: string;
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- }[];
274
- Genes: ({
275
- name: string;
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- label: string;
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- filetype: string;
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- options?: undefined;
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- url?: undefined;
280
- } | {
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- name: string;
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- label: string;
283
- options: {
284
- categoryColors: {
285
- coding: string;
286
- nonCoding: string;
287
- pseudogene: string;
288
- problem: string;
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- polyA: string;
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- };
291
- };
292
- filetype: string;
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- url?: undefined;
294
- } | {
295
- name: string;
296
- label: string;
297
- url: string;
298
- options: {
299
- categoryColors: {
300
- coding: string;
301
- nonCoding: string;
302
- pseudogene: string;
303
- problem: string;
304
- polyA: string;
305
- };
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- };
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- filetype: string;
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- })[];
309
- "Transcription Factor": {
310
- name: string;
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- type: string;
312
- url: string;
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- }[];
314
- Variation: {
315
- name: string;
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- label: string;
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- type: string;
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- }[];
319
- RepeatMasker: {
320
- "All Repeats": {
321
- name: string;
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- label: string;
323
- filetype: string;
324
- url: string;
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- height: number;
326
- }[];
327
- };
328
- Conservation: ({
329
- name: string;
330
- label: string;
331
- filetype: string;
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- url: string;
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- height: number;
334
- options: {
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- color: string;
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- color2?: undefined;
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- };
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- } | {
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- name: string;
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- label: string;
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- filetype: string;
342
- url: string;
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- height: number;
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- options: {
345
- color: string;
346
- color2: string;
347
- };
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- })[];
349
- "Genome Annotation": ({
350
- name: string;
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- label: string;
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- filetype: string;
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- url: string;
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- height: number;
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- options: {
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- color: string;
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- label?: undefined;
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- category?: undefined;
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- backgroundColor?: undefined;
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- color2?: undefined;
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- yScale?: undefined;
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- yMin?: undefined;
363
- yMax?: undefined;
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- };
365
- details: {
366
- source: string;
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- "download url": string;
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- };
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- type?: undefined;
370
- } | {
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- type: string;
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- name: string;
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- url: string;
374
- height: number;
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- options: {
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- label: string;
377
- category: {
378
- Island: {
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- name: string;
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- color: string;
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- };
382
- Shore: {
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- name: string;
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- color: string;
385
- };
386
- Shelf: {
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- name: string;
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- color: string;
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- };
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- CGI?: undefined;
391
- };
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- backgroundColor: string;
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- color?: undefined;
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- color2?: undefined;
395
- yScale?: undefined;
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- yMin?: undefined;
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- yMax?: undefined;
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- };
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- label?: undefined;
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- filetype?: undefined;
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- details?: undefined;
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- } | {
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- type: string;
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- name: string;
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- url: string;
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- height: number;
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- options: {
408
- label: string;
409
- category: {
410
- CGI: {
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- name: string;
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- color: string;
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- };
414
- Island?: undefined;
415
- Shore?: undefined;
416
- Shelf?: undefined;
417
- };
418
- color?: undefined;
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- backgroundColor?: undefined;
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- color2?: undefined;
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- yScale?: undefined;
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- yMin?: undefined;
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- yMax?: undefined;
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- };
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- label?: undefined;
426
- filetype?: undefined;
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- details?: undefined;
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- } | {
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- name: string;
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- label: string;
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- filetype: string;
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- url: string;
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- height: number;
434
- options: {
435
- color: string;
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- label?: undefined;
437
- category?: undefined;
438
- backgroundColor?: undefined;
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- color2?: undefined;
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- yScale?: undefined;
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- yMin?: undefined;
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- yMax?: undefined;
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- };
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- details?: undefined;
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- type?: undefined;
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- } | {
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- name: string;
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- label: string;
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- filetype: string;
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- url: string;
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- height: number;
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- options: {
453
- color: string;
454
- color2: string;
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- yScale: string;
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- yMin: number;
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- yMax: number;
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- label?: undefined;
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- category?: undefined;
460
- backgroundColor?: undefined;
461
- };
462
- details?: undefined;
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- type?: undefined;
464
- })[];
465
- "Genome Comparison": ({
466
- name: string;
467
- label: string;
468
- querygenome: string;
469
- filetype: string;
470
- url: string;
471
- details?: undefined;
472
- } | {
473
- name: string;
474
- label: string;
475
- querygenome: string;
476
- filetype: string;
477
- url: string;
478
- details: {
479
- source: string;
480
- "download url": string;
481
- };
482
- })[];
483
- Mappability: {
484
- name: string;
485
- label: string;
486
- filetype: string;
487
- url: string;
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- height: number;
489
- options: {
490
- yScale: string;
491
- yMin: number;
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- yMax: number;
493
- };
494
- details: {
495
- datafiletype: string;
496
- subId: number;
497
- size: string;
498
- uniqueness: string;
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- software: string;
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- download: string;
501
- };
502
- }[];
503
- };
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- twoBitURL: string;
505
- };
@@ -1,2 +0,0 @@
1
- import "./init-D8gtYsaQ.mjs";
2
- import "./index-DryYmDPe.mjs";