wuepgg3-track 3.0.2 → 3.0.4

package/dist/{init-BCc7WBpx.mjs → init-D8gtYsaQ.mjs}

@@ -1,5 +1,5 @@
-import { E as m, U as ct, T as de, b as dt, a2 as w, a3 as U, t as C, ac as he, Z as I, ad as D, O as ht, n as Y, ae as ft, af as fe, _ as Se, ag as W, ah as pt, ai as P, w as X, G as Pe, a as Fe, M as R, m as A, h as Be, F, a5 as ie, R as se, z as Re, d as O, B, D as ne, x as K, aj as gt, ak as ae, J as te, al as V, S as oe, o as Me, s as Ue, a7 as Ge, aa as ze, p as mt, q as xt, a8 as _t, a9 as yt, ab as bt, am as vt, an as Tt, ao as N, e as T, ap as wt } from "./index-BY4pGSpV.mjs";
-import { F as Ct, S as j, c as $, a as St, b as Pt, B as Ae } from "./colorToUniform-CsQEU8Js.mjs";
+import { E as m, U as ct, T as de, b as dt, a2 as w, a3 as U, t as C, ac as he, Z as I, ad as D, O as ht, n as Y, ae as ft, af as fe, _ as Se, ag as W, ah as pt, ai as P, w as X, G as Pe, a as Fe, M as R, m as A, h as Be, F, a5 as ie, R as se, z as Re, d as O, B, D as ne, x as K, aj as gt, ak as ae, J as te, al as V, S as oe, o as Me, s as Ue, a7 as Ge, aa as ze, p as mt, q as xt, a8 as _t, a9 as yt, ab as bt, am as vt, an as Tt, ao as N, e as T, ap as wt } from "./index-DryYmDPe.mjs";
+import { F as Ct, S as j, c as $, a as St, b as Pt, B as Ae } from "./colorToUniform-DQmiMhES.mjs";
 class ke {
   /**
    * Initialize the plugin with scope of application instance

package/dist/models/AlignmentSegment.d.ts

@@ -5,7 +5,7 @@ import ChromosomeInterval from "./ChromosomeInterval";
 /**
  * A segment of an alignment record.  Has methods that get parts of the attached record's sequences and loci.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export declare class AlignmentSegment extends FeatureSegment {
     readonly feature: AlignmentRecord;

package/dist/models/AlignmentStringUtils.d.ts

@@ -33,7 +33,7 @@ export declare function makeBaseNumberLookup(sequence: string, baseAtStart: numb
 /**
  * An iterator that steps along a string, skipping '-' characters.  Instances start at index -1.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export declare class AlignmentIterator {
     sequence: string;

package/dist/models/BamAlignment.d.ts

@@ -15,7 +15,7 @@ interface AlignmentResult {
 /**
  * A BAM record.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  * @author David Ayeke
  * @author Daofeng Li
  */

package/dist/models/BedRecord.d.ts

@@ -1,7 +1,7 @@
 /**
  * Records returned by BedSource and its worker.  Each prop is a column in the bed file.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface BedRecord {
     chr: string;

package/dist/models/Chromosome.d.ts

@@ -1,7 +1,7 @@
 /**
  * Simple container for chromosome info.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export default class Chromosome {
     private _name;

package/dist/models/ChromosomeInterval.d.ts

@@ -20,7 +20,7 @@ interface MergedLocus<T> {
  * Basically an OpenInterval with a chromosome's name.  Expresses genomic coordinates.
  *
  * @implements {Serializable}
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 declare class ChromosomeInterval extends OpenInterval implements IChromosomeInterval {
     chr: string;

package/dist/models/DisplayedRegionModel.d.ts

@@ -6,7 +6,7 @@ import ChromosomeInterval from "./ChromosomeInterval";
  * Model that stores the view window/region in a larger navigation context (e.g. a genome).  Internally stores the
  * region as an open interval of nav context coordinates (@see {@link NavigationContext}).
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 declare class DisplayedRegionModel {
     _navContext: NavigationContext;

package/dist/models/Feature.d.ts

@@ -16,7 +16,7 @@ export declare const REVERSE_STRAND_CHAR = "-";
  * A feature, or annotation, in the genome.
  *
  * @implements {Serializable}
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export declare class Feature {
     locus: ChromosomeInterval;
@@ -78,7 +78,7 @@ export declare class Feature {
 /**
  * Everything a Feature is, plus a `value` prop.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export declare class NumericalFeature extends Feature {
     value: number | undefined;

package/dist/models/FeatureAggregator.d.ts

@@ -46,7 +46,7 @@ export declare const DefaultArrayAggregators: {
 /**
  * Aggregator of features.  Includes methods to construct x-to-data maps.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu, Chanrung(Chad) Seng
  */
 export declare class FeatureAggregator {
     /**

package/dist/models/NavigationContext.d.ts

@@ -10,7 +10,7 @@ import { Feature } from "./Feature";
  * have non-empty, unique names.  In addition to this implicit coordinate system, NavContext methods also support
  * feature coordinates, which are a feature and base number relative to the start of the feature.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 declare class NavigationContext {
     _name: string;

package/dist/models/OpenInterval.d.ts

@@ -10,7 +10,7 @@ export interface IOpenInterval {
  *     `myFunction(...interval)` is equivalent to `myFunction(interval.start, interval.end)`
  *
  * @implements {Serializable}
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export default class OpenInterval implements IOpenInterval {
     readonly start: number;

package/dist/models/Snp.d.ts

@@ -2,7 +2,7 @@ import Feature from "./Feature";
 /**
  * A data container for snp.
  *
- * @author Daofeng Li and Silas Hsu
+ * @author Daofeng Li and Chanrung(Chad) Seng, Silas Hsu
  */
 declare class Snp extends Feature {
     id: string;

package/dist/models/TrackModel.d.ts

@@ -47,7 +47,7 @@ interface ITrackModel {
  * An object storing track metadata and state.
  *
  * @implements {Serializable}
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export declare class TrackModel {
     /**

package/dist/trackConfigs/config-menu-components.tsx/ColorConfig.d.ts

@@ -2,7 +2,7 @@ import React from "react";
 /**
  * A context menu item that configures tracks' colors in general.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface ColorConfigProps {
     color?: any;

package/dist/trackConfigs/config-menu-components.tsx/NumberConfig.d.ts

@@ -2,7 +2,7 @@ import React from "react";
 /**
  * A menu option that configures some integer-based property.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface NumberConfigProps {
     optionsObjects: any;

package/dist/webworkerAll-BYF_bwOo.mjs

@@ -0,0 +1,2 @@
+import "./init-D8gtYsaQ.mjs";
+import "./index-DryYmDPe.mjs";

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "wuepgg3-track",
   "private": false,
-  "version": "3.0.2",
+  "version": "3.0.4",
   "main": "dist/index.umd.js",
   "module": "dist/index.es.js",
   "types": "dist/index.d.ts",

package/dist/components/GenomeView/TrackComponents/bedComponents/BedcolorTrack.d.ts

@@ -1,6 +0,0 @@
-import Bedcolor from "./Bedcolor";
-export declare const DEFAULT_OPTIONS: {
-    rowHeight: number;
-    hiddenPixels: number;
-};
-export default Bedcolor;

package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/AnnotationTrack.d.ts

@@ -1,25 +0,0 @@
-import React from "react";
-export declare const DEFAULT_OPTIONS: {
-    displayMode: string;
-    color: string;
-    color2: string;
-    maxRows: number;
-    height: number;
-    hideMinimalItems: boolean;
-    sortItems: boolean;
-};
-/**
- * A component that visualizes annotations or Features.
- *
- * @author Silas Hsu
- */
-interface AnnotationTrackProps {
-    options: {
-        displayMode: string;
-        [key: string]: any;
-    };
-}
-export declare class AnnotationTrack extends React.PureComponent<AnnotationTrackProps> {
-    render(): any;
-}
-export default AnnotationTrack;

package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/FullDisplayMode.d.ts

@@ -1,45 +0,0 @@
-import React, { JSX } from "react";
-import { PlacedFeatureGroup, PaddingFunc } from "../../../../../models/FeatureArranger";
-import Feature from "../../../../../models/Feature";
-import { SortItemsOptions } from "../../../../../models/SortItemsOptions";
-/**
- * Callback for getting an annotation to render
- *
- * @param {PlacedFeatureGroup} placedGroup - the feature to draw, and drawing info
- * @param {number} y - suggested y coordinate of the top of the annotation
- * @param {boolean} isLastRow - whether the annotation is assigned to the last configured row
- * @param {number} index - iteration index; could be useful as a key
- * @return {JSX.Element} the annotation element to render
- */
-type AnnotationCallback = (placedGroup: PlacedFeatureGroup, y: number, isLastRow: boolean, index: number) => JSX.Element;
-interface FullDisplayModeProps {
-    data: Feature[];
-    rowHeight: number;
-    options: {
-        maxRows: number;
-        hiddenPixels?: number;
-        hideMinimalItems?: boolean;
-        sortItems?: SortItemsOptions;
-    };
-    visRegion?: any;
-    width?: number;
-    legend?: JSX.Element;
-    featurePadding?: number | PaddingFunc;
-    getAnnotationElement?: AnnotationCallback;
-    message?: JSX.Element;
-}
-/**
- * An arranger and renderer of features, or annotations.
- *
- * @author Silas Hsu
- */
-declare class FullDisplayMode extends React.Component<FullDisplayModeProps> {
-    static defaultProps: {
-        featurePadding: number;
-    };
-    private featureArranger;
-    constructor(props: FullDisplayModeProps);
-    getHeight(numRows: number): number;
-    render(): any;
-}
-export default FullDisplayMode;

package/dist/getRemoteData/JasparSource.d.ts

@@ -1,8 +0,0 @@
-import BigSourceWorkerGmod from "./BigSourceWorkerGmod";
-declare class JasparSource {
-    maxBasesPerPixel: number;
-    workerSource: BigSourceWorkerGmod;
-    constructor(url: any);
-    getData(region: any, basesPerPixel: any, options: any): Promise<any[]>;
-}
-export default JasparSource;

package/dist/webworkerAll-D1y9mAuB.mjs

@@ -1,2 +0,0 @@
-import "./init-BCc7WBpx.mjs";
-import "./index-BY4pGSpV.mjs";