wuepgg3-track 3.0.2 → 3.0.4

package/dist/{SharedSystems-DIJv-DN5.mjs → SharedSystems-D2-L-AEG.mjs}

@@ -1,5 +1,5 @@
-import { u as Ee, m as ae, M as v, G as De, a as Oe, v as ne, E as u, e as D, x as S, y as Fe, z as O, F as b, R as F, H as ie, I as Le, t as m, c as f, j as B, w as L, J as Y, K as He, d as J, B as k, k as U, L as ze, N as M, l as T, O as w, Q as We, b as Ve, V as oe, W as le, X as ue, Y as de, C as P, Z as Ne, _ as A, $ as X, D as H, a0 as je, P as $e, h as qe, T as Q, a1 as Z, a2 as Ke, a3 as Ye, a4 as Je } from "./index-BY4pGSpV.mjs";
-import { F as Xe, S as Qe, B as ce, c as Ze } from "./colorToUniform-CsQEU8Js.mjs";
+import { u as Ee, m as ae, M as v, G as De, a as Oe, v as ne, E as u, e as D, x as S, y as Fe, z as O, F as b, R as F, H as ie, I as Le, t as m, c as f, j as B, w as L, J as Y, K as He, d as J, B as k, k as U, L as ze, N as M, l as T, O as w, Q as We, b as Ve, V as oe, W as le, X as ue, Y as de, C as P, Z as Ne, _ as A, $ as X, D as H, a0 as je, P as $e, h as qe, T as Q, a1 as Z, a2 as Ke, a3 as Ye, a4 as Je } from "./index-DryYmDPe.mjs";
+import { F as Xe, S as Qe, B as ce, c as Ze } from "./colorToUniform-DQmiMhES.mjs";
 var et = `in vec2 vMaskCoord;
 in vec2 vTextureCoord;
 

package/dist/{WebGLRenderer-CsTrvYOX.mjs → WebGLRenderer-0nbxwc6U.mjs}

@@ -1,6 +1,6 @@
-import { E as d, B, w as m, D as S, J as K, a as Be, S as U, t as b, a5 as Ae, l as $, a6 as Ne, c as p, O as H, k as A, j as N, m as F, M as z, a7 as Y, a8 as ye, a9 as Ce, aa as q, ab as De, A as Ie, R as Ge, e as T } from "./index-BY4pGSpV.mjs";
-import { S as O, b as Z } from "./colorToUniform-CsQEU8Js.mjs";
-import { e as Ue, G as Fe, c as Oe, b as Pe, U as Me, R as Le, B as J, d as y, f as He, S as we, a as Ve } from "./SharedSystems-DIJv-DN5.mjs";
+import { E as d, B, w as m, D as S, J as K, a as Be, S as U, t as b, a5 as Ae, l as $, a6 as Ne, c as p, O as H, k as A, j as N, m as F, M as z, a7 as Y, a8 as ye, a9 as Ce, aa as q, ab as De, A as Ie, R as Ge, e as T } from "./index-DryYmDPe.mjs";
+import { S as O, b as Z } from "./colorToUniform-DQmiMhES.mjs";
+import { e as Ue, G as Fe, c as Oe, b as Pe, U as Me, R as Le, B as J, d as y, f as He, S as we, a as Ve } from "./SharedSystems-D2-L-AEG.mjs";
 class Q {
   constructor() {
     this._tempState = O.for2d(), this._didUploadHash = {};

package/dist/{WebGPURenderer-DzVu_lWJ.mjs → WebGPURenderer-DWuXep8H.mjs}

@@ -1,6 +1,6 @@
-import { g as E, E as p, f as ae, D as S, c as C, B as T, d as ue, h as A, i as M, w as v, j as y, k as ce, l as de, m as L, n as w, M as k, o as D, p as he, q as pe, s as H, S as z, t as R, A as le, R as fe, e as B } from "./index-BY4pGSpV.mjs";
-import { S as F, l as ge, a as me } from "./colorToUniform-CsQEU8Js.mjs";
-import { c as _e, u as be, U as ye, B as xe, G as Ge, e as Se, R as Be, t as Pe, S as Te, a as Ce } from "./SharedSystems-DIJv-DN5.mjs";
+import { g as E, E as p, f as ae, D as S, c as C, B as T, d as ue, h as A, i as M, w as v, j as y, k as ce, l as de, m as L, n as w, M as k, o as D, p as he, q as pe, s as H, S as z, t as R, A as le, R as fe, e as B } from "./index-DryYmDPe.mjs";
+import { S as F, l as ge, a as me } from "./colorToUniform-DQmiMhES.mjs";
+import { c as _e, u as be, U as ye, B as xe, G as Ge, e as Se, R as Be, t as Pe, S as Te, a as Ce } from "./SharedSystems-D2-L-AEG.mjs";
 const x = F.for2d();
 class O {
   start(e, t, r) {

package/dist/{browserAll-B3IbIX5M.mjs → browserAll-C-dLabXl.mjs}

@@ -1,5 +1,5 @@
-import { T as A, U as Z, P as g, r as te, E as b, b as ie, w as y, e as w, C as V } from "./index-BY4pGSpV.mjs";
-import "./init-BCc7WBpx.mjs";
+import { T as A, U as Z, P as g, r as te, E as b, b as ie, w as y, e as w, C as V } from "./index-DryYmDPe.mjs";
+import "./init-D8gtYsaQ.mjs";
 class q {
   constructor(e) {
     this._lastTransform = "", this._observer = null, this._tickerAttached = !1, this.updateTranslation = () => {

package/dist/{colorToUniform-CsQEU8Js.mjs → colorToUniform-DQmiMhES.mjs}

@@ -1,4 +1,4 @@
-import { S as M, G as x, a as F } from "./index-BY4pGSpV.mjs";
+import { S as M, G as x, a as F } from "./index-DryYmDPe.mjs";
 const T = {
   normal: 0,
   add: 1,

package/dist/components/GenomeView/TrackComponents/BamComponents/BamAnnotation.d.ts

@@ -17,7 +17,7 @@ interface BamAnnotationProps {
 /**
  * Draws a single BAM annotation.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export declare class BamAnnotation extends React.Component<BamAnnotationProps, {}> {
     static HEIGHT: number;

package/dist/components/GenomeView/TrackComponents/CategoricalComponents/CategoricalAnnotation.d.ts

@@ -22,7 +22,7 @@ interface CategoricalAnnotationProps {
 /**
  * Visualizer for Feature objects.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 declare class CategoricalAnnotation extends React.Component<CategoricalAnnotationProps> {
     static TEXT_HEIGHT: number;

package/dist/components/GenomeView/TrackComponents/RulerComponents/Ruler.d.ts

@@ -3,7 +3,7 @@ import DisplayedRegionModel from "../../../../models/DisplayedRegionModel";
 /**
  * Draws a ruler that displays feature coordinates.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface RulerProps {
     viewRegion: DisplayedRegionModel;

package/dist/components/GenomeView/TrackComponents/commonComponents/TrackLegend.d.ts

@@ -21,7 +21,7 @@ interface TrackLegendProps {
 /**
  * A box displaying labels, axes, and other important track info.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 declare class TrackLegend extends React.PureComponent<TrackLegendProps> {
     static defaultProps: {

package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/AnnotationArrows.d.ts

@@ -2,7 +2,7 @@ import React from "react";
 /**
  * A series of evenly-spaced arrows on a horizontal axis.  Renders SVG elements.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface ArrowProps {
     startX: number;

package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/NumericalTrack.d.ts

@@ -33,7 +33,7 @@ export declare const DEFAULT_OPTIONS: {
 /**
  * Track specialized in showing numerical data.
  *
- * @author Silas Hsu, Chanrung Seng
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 declare const NumericalTrack: React.FC<NumericalTrackProps>;
 export default NumericalTrack;

package/dist/components/GenomeView/TrackComponents/geneAnnotationTrackComponents/BackgroundedText.d.ts

@@ -4,7 +4,7 @@ import React from "react";
  * rather than measuring the text's bounding box.  It is reasonably good at this estimation; nonetheless, we are dealing
  * with a guess, so the background box may not be completely accurate.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface BackgroundedTextProps {
     x?: number;

package/dist/components/GenomeView/TrackComponents/geneAnnotationTrackComponents/GeneDetail.d.ts

@@ -3,7 +3,7 @@ import Gene from "../../../../models/Gene";
 /**
  * Box that contains gene details when a gene annotation is clicked.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface GeneDetailProps {
     gene: Gene;
@@ -13,7 +13,7 @@ interface GeneDetailProps {
 /**
  * Box that contains gene details when a gene annotation is clicked.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 declare const GeneDetail: React.FC<GeneDetailProps>;
 export default GeneDetail;

package/dist/components/GenomeView/genomeNavigator/Ruler.d.ts

@@ -3,7 +3,7 @@ import DisplayedRegionModel from "../../../models/DisplayedRegionModel";
 /**
  * Draws a ruler that displays feature coordinates.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface RulerProps {
     viewRegion: DisplayedRegionModel;

package/dist/components/GenomeView/genomeNavigator/SelectableGenomeArea.d.ts

@@ -20,7 +20,7 @@ interface SelectableGenomeAreaProps {
 /**
  * A SelectableArea, but also displays the selected length in base pairs, and puts a limit on the selected size.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export declare class SelectableGenomeArea extends React.PureComponent<SelectableGenomeAreaProps> {
     constructor(props: SelectableGenomeAreaProps);

package/dist/components/GenomeView/genomeNavigator/SelectedRegionBox.d.ts

@@ -3,7 +3,7 @@ import DisplayedRegionModel from "../../../models/DisplayedRegionModel";
 /**
  * A box that shows the currently selected region, or a GOTO button if the currently selected region is out of view.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 interface SelectedRegionBoxProps {
     viewRegion: DisplayedRegionModel;

package/dist/genome-hub/GenomeSerializer.d.ts

@@ -5,7 +5,7 @@ export default class GenomeSerializer {
     static deserialize(object: IGenome): GenomeConfig;
     static validateGenomeObject(object: any): {
         valid: boolean;
-        errors: import("ajv").ErrorObject<string, Record<string, any>, unknown>[] | null | undefined;
+        errors: import("ajv").ErrorObject[] | null | undefined;
     } | {
         valid: boolean;
         errors?: undefined;

package/dist/genome-hub/genome-schema.d.ts

@@ -1,3 +1,4 @@
+import Ajv from 'ajv';
 export declare const genomeDataSchema: {
     type: string;
     required: string[];
@@ -190,7 +191,7 @@ export declare const genomeDataSchema: {
 };
 export declare function validateGenomeData(data: any): {
     valid: boolean;
-    errors: import("ajv").ErrorObject<string, Record<string, any>, unknown>[] | null | undefined;
+    errors: Ajv.ErrorObject[] | null | undefined;
 } | {
     valid: boolean;
     errors?: undefined;

package/dist/getRemoteData/BigSourceWorkerGmod.d.ts

@@ -1,17 +1,16 @@
-export declare function resolveUriLocation(location: any): any;
+import { BigWig } from "@gmod/bbi";
 declare class BigSourceWorkerGmod {
     url: any;
-    bw: any;
+    private chromNamingCache;
+    bw: BigWig;
+    useEnsemblStyle: null | boolean;
     /**
      *
      * @param {string} url - the URL from which to fetch data
      */
     constructor(url: any);
     /**
-     * Creates a new BigWig instance (no caching between requests)
-     */
-    /**
-     * Detects if the BigWig file uses Ensembl chromosome naming convention
+     * Detects if the BigWig file uses Ensembl
      * @return {Promise<boolean>} True if Ensembl naming (1, 2, 3...), false if UCSC naming (chr1, chr2, chr3...)
      */
     detectChromosomeNaming(): Promise<boolean>;
@@ -23,6 +22,6 @@ declare class BigSourceWorkerGmod {
      * @return {Promise<DASFeature[]>} a Promise for the data
      * @override
      */
-    getData(loci: any, basesPerPixel: any, options: any): Promise<any[]>;
+    getData: (loci: any, basesPerPixel: any, options: any) => Promise<any[]>;
 }
 export default BigSourceWorkerGmod;

package/dist/getRemoteData/hicSource.d.ts

@@ -2,7 +2,7 @@ import { NormalizationMode } from "./HicDataModes";
 /**
  * Data source that fetches data from .hic files.
  *
- * @author Silas Hsu
+ * @author Chanrung(Chad) Seng, Silas Hsu
  */
 export declare class HicSource {
     currentBinSize: number;

package/dist/getRemoteData/io/remoteFile.d.ts

@@ -2,6 +2,6 @@ declare class RemoteFile {
     config: any;
     url: any;
     constructor(args: any);
-    read(position: any, length: any): Promise<any>;
+    read(position: any, length: any): Promise<ArrayBuffer>;
 }
 export default RemoteFile;