wuepgg3-track 1.0.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/CanvasPool-BD4ZA6VU.mjs +46 -0
- package/dist/SharedSystems-BNa57PRW.mjs +2521 -0
- package/dist/WebGLRenderer-DWCYIsx2.mjs +2624 -0
- package/dist/WebGPURenderer-BxRqKjyD.mjs +1613 -0
- package/dist/browserAll-CQks4WgI.mjs +2134 -0
- package/dist/colorToUniform-BcHZBaJ_.mjs +218 -0
- package/dist/components/GenomeView/GenomeRoot.d.ts +5 -0
- package/dist/components/GenomeView/ToolComponents/HighlightMenu.d.ts +20 -0
- package/dist/components/GenomeView/ToolComponents/MetadataHeader.d.ts +9 -0
- package/dist/components/GenomeView/ToolComponents/MetadataSelectionMenu.d.ts +10 -0
- package/dist/components/GenomeView/ToolComponents/Tools.d.ts +32 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/ArrowList.d.ts +9 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/BigwigSource.d.ts +7 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/CategoryLegend.d.ts +7 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/ColorPicker.d.ts +12 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/FrameListMenu.d.ts +6 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/HoverInfo.d.ts +20 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/Legend.d.ts +6 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/ModelListMenu.d.ts +7 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/OpacityThickness.d.ts +4 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/ResolutionList.d.ts +8 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/ShapeList.d.ts +10 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/StaticLegend.d.ts +6 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/ThreedmolContainer.d.ts +261 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/binning.d.ts +36 -0
- package/dist/components/GenomeView/TrackComponents/3dmol/helpers-3dmol.d.ts +68 -0
- package/dist/components/GenomeView/TrackComponents/BamComponents/BamAnnotation.d.ts +45 -0
- package/dist/components/GenomeView/TrackComponents/CategoricalComponents/CategoricalAnnotation.d.ts +48 -0
- package/dist/components/GenomeView/TrackComponents/CommonTrackStateChangeFunctions.tsx/cacheFetchedData.d.ts +23 -0
- package/dist/components/GenomeView/TrackComponents/CommonTrackStateChangeFunctions.tsx/getDataAfterConfigChange.d.ts +11 -0
- package/dist/components/GenomeView/TrackComponents/CommonTrackStateChangeFunctions.tsx/getTrackPixelXOffset.d.ts +3 -0
- package/dist/components/GenomeView/TrackComponents/CommonTrackStateChangeFunctions.tsx/trackGlobalState.d.ts +6 -0
- package/dist/components/GenomeView/TrackComponents/DynseqComponents/DynseqTrackComponents.d.ts +80 -0
- package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/AlignmentCoordinate.d.ts +19 -0
- package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/GenomeAlignComponents.d.ts +45 -0
- package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/HorizontalFragment.d.ts +20 -0
- package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/MultiAlignmentViewCalculator.d.ts +112 -0
- package/dist/components/GenomeView/TrackComponents/GenomeAlignComponents/Sequence.d.ts +39 -0
- package/dist/components/GenomeView/TrackComponents/GroupedTrackManager.d.ts +54 -0
- package/dist/components/GenomeView/TrackComponents/InteractionComponents/ArcDisplay.d.ts +37 -0
- package/dist/components/GenomeView/TrackComponents/InteractionComponents/CubicCurveDisplay.d.ts +22 -0
- package/dist/components/GenomeView/TrackComponents/InteractionComponents/Heatmap.d.ts +40 -0
- package/dist/components/GenomeView/TrackComponents/InteractionComponents/InteractionTrackComponent.d.ts +74 -0
- package/dist/components/GenomeView/TrackComponents/InteractionComponents/PixiArc.d.ts +60 -0
- package/dist/components/GenomeView/TrackComponents/InteractionComponents/PixiHeatmap.d.ts +78 -0
- package/dist/components/GenomeView/TrackComponents/InteractionComponents/SquareDisplay.d.ts +32 -0
- package/dist/components/GenomeView/TrackComponents/MethylcComponents/MethylCTrackComputation.d.ts +71 -0
- package/dist/components/GenomeView/TrackComponents/QBedComponents/QBedTrackComponents.d.ts +74 -0
- package/dist/components/GenomeView/TrackComponents/RulerComponents/Ruler.d.ts +17 -0
- package/dist/components/GenomeView/TrackComponents/RulerComponents/RulerComponent.d.ts +19 -0
- package/dist/components/GenomeView/TrackComponents/SnpComponents/SnpAnnotation.d.ts +17 -0
- package/dist/components/GenomeView/TrackComponents/SnpComponents/SnpDetail.d.ts +7 -0
- package/dist/components/GenomeView/TrackComponents/TrackFactory.d.ts +4 -0
- package/dist/components/GenomeView/TrackComponents/VcfComponents/Vcf.d.ts +22 -0
- package/dist/components/GenomeView/TrackComponents/VcfComponents/VcfAnnotation.d.ts +41 -0
- package/dist/components/GenomeView/TrackComponents/VcfComponents/VcfDetail.d.ts +14 -0
- package/dist/components/GenomeView/TrackComponents/VcfComponents/VcfTrack.d.ts +69 -0
- package/dist/components/GenomeView/TrackComponents/bedComponents/BedAnnotation.d.ts +33 -0
- package/dist/components/GenomeView/TrackComponents/bedComponents/Bedcolor.d.ts +13 -0
- package/dist/components/GenomeView/TrackComponents/bedComponents/BedcolorTrack.d.ts +6 -0
- package/dist/components/GenomeView/TrackComponents/bedComponents/DynamicBedTrackComponents.d.ts +28 -0
- package/dist/components/GenomeView/TrackComponents/bedComponents/FiberAnnotation.d.ts +33 -0
- package/dist/components/GenomeView/TrackComponents/bedComponents/FiberTrackComponent.d.ts +90 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/CopyToClipboard.d.ts +11 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/HoverToolTips/GenomicCoordinates.d.ts +23 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/HoverToolTips/HoverToolTip.d.ts +89 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/MetadataIndicator.d.ts +11 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/OutsideClickDetector.d.ts +8 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/Resize.d.ts +6 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/TrackLegend.d.ts +39 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/TrackMessage.d.ts +33 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/AnnotationArrows.d.ts +28 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/AnnotationTrack.d.ts +25 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/FeatureDetail.d.ts +20 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/FullDisplayMode.d.ts +45 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/JasparDetail.d.ts +12 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/annotation/PixiAnnotation.d.ts +67 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/art/DesignRenderer.d.ts +30 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/art/RulerDesigner.d.ts +102 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/check-obj-dupe.d.ts +8 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/chr-order/SortableItem.d.ts +11 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/chr-order/SortableTrack.d.ts +17 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/DynamicNumericalTrack.d.ts +37 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/DynamicplotTrackComponent.d.ts +80 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/GenomicCoordinates.d.ts +23 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/MatplotTrackComponent.d.ts +65 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/NumericalAggregator.d.ts +5 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/NumericalTrack.d.ts +39 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/numerical/PixiScene.d.ts +66 -0
- package/dist/components/GenomeView/TrackComponents/commonComponents/stats/BoxplotTrackComponents.d.ts +106 -0
- package/dist/components/GenomeView/TrackComponents/defaultOptionsMap.d.ts +3 -0
- package/dist/components/GenomeView/TrackComponents/displayModeComponentMap.d.ts +9 -0
- package/dist/components/GenomeView/TrackComponents/geneAnnotationTrackComponents/BackgroundedText.d.ts +50 -0
- package/dist/components/GenomeView/TrackComponents/geneAnnotationTrackComponents/GeneAnnotation.d.ts +33 -0
- package/dist/components/GenomeView/TrackComponents/geneAnnotationTrackComponents/GeneAnnotationScaffold.d.ts +26 -0
- package/dist/components/GenomeView/TrackComponents/geneAnnotationTrackComponents/GeneDetail.d.ts +19 -0
- package/dist/components/GenomeView/TrackComponents/geneAnnotationTrackComponents/TranslatableG.d.ts +15 -0
- package/dist/components/GenomeView/TrackComponents/imageTrackComponents/OmeroHtmlVisualizer.d.ts +41 -0
- package/dist/components/GenomeView/TrackComponents/imageTrackComponents/OmeroSvgVisualizer.d.ts +35 -0
- package/dist/components/GenomeView/TrackComponents/imageTrackComponents/OmeroTrackComponents.d.ts +33 -0
- package/dist/components/GenomeView/TrackManager.d.ts +31 -0
- package/dist/components/GenomeView/genomeNavigator/Chromosomes.d.ts +94 -0
- package/dist/components/GenomeView/genomeNavigator/DragAcrossDiv.d.ts +71 -0
- package/dist/components/GenomeView/genomeNavigator/GeneSearchBox.d.ts +15 -0
- package/dist/components/GenomeView/genomeNavigator/GeneSearchBox3D.d.ts +22 -0
- package/dist/components/GenomeView/genomeNavigator/GeneSearchBoxBase.d.ts +18 -0
- package/dist/components/GenomeView/genomeNavigator/GenomeNavigator.d.ts +87 -0
- package/dist/components/GenomeView/genomeNavigator/IsoformSelection.d.ts +11 -0
- package/dist/components/GenomeView/genomeNavigator/MainPane.d.ts +68 -0
- package/dist/components/GenomeView/genomeNavigator/Ruler.d.ts +23 -0
- package/dist/components/GenomeView/genomeNavigator/SelectableGenomeArea.d.ts +34 -0
- package/dist/components/GenomeView/genomeNavigator/SelectedRegionBox.d.ts +48 -0
- package/dist/components/GenomeView/genomeNavigator/SnpSearchBox.d.ts +14 -0
- package/dist/components/GenomeView/genomeNavigator/TrackRegionController.d.ts +19 -0
- package/dist/genome-hub/GenomeHubManager.d.ts +15 -0
- package/dist/genome-hub/GenomeSerializer.d.ts +13 -0
- package/dist/genome-hub/LocalGenomeRepository.d.ts +15 -0
- package/dist/genome-hub/genome-schema.d.ts +198 -0
- package/dist/genome-hub/index.d.ts +3 -0
- package/dist/getLocalData/BedTextSource.d.ts +22 -0
- package/dist/getLocalData/LocalBigSourceGmod.d.ts +28 -0
- package/dist/getLocalData/LongrangeAndreaTextSource.d.ts +11 -0
- package/dist/getLocalData/localFetchData.d.ts +6 -0
- package/dist/getLocalData/localTabixSource.d.ts +50 -0
- package/dist/getLocalData/localTextSource.d.ts +13 -0
- package/dist/getRemoteData/BamSource.d.ts +10 -0
- package/dist/getRemoteData/BigSourceWorker.d.ts +47 -0
- package/dist/getRemoteData/BigSourceWorkerGmod.d.ts +25 -0
- package/dist/getRemoteData/GenomeInteraction.d.ts +20 -0
- package/dist/getRemoteData/HicDataModes.d.ts +19 -0
- package/dist/getRemoteData/JasparSource.d.ts +8 -0
- package/dist/getRemoteData/RepeatSource.d.ts +8 -0
- package/dist/getRemoteData/TwoBitSource.d.ts +31 -0
- package/dist/getRemoteData/VcfSource.d.ts +10 -0
- package/dist/getRemoteData/fetchDataWorker.d.ts +61 -0
- package/dist/getRemoteData/fetchGenomeAlignWorker.d.ts +64 -0
- package/dist/getRemoteData/fetchTrackData.d.ts +4 -0
- package/dist/getRemoteData/g3dFileV2.d.ts +15 -0
- package/dist/getRemoteData/hicSource.d.ts +83 -0
- package/dist/getRemoteData/io/browserLocalFile.d.ts +6 -0
- package/dist/getRemoteData/io/remoteFile.d.ts +7 -0
- package/dist/getRemoteData/tabixSource.d.ts +46 -0
- package/dist/getRemoteData/vendor/bbi-js/main/bigwig.d.ts +1 -0
- package/dist/getRemoteData/vendor/bbi-js/utils/bin.d.ts +1 -0
- package/dist/getRemoteData/vendor/bbi-js/utils/das.d.ts +6 -0
- package/dist/getRemoteData/vendor/bbi-js/utils/jszlib.d.ts +1 -0
- package/dist/getRemoteData/vendor/bbi-js/utils/sha1.d.ts +1 -0
- package/dist/getRemoteData/vendor/bbi-js/utils/spans.d.ts +13 -0
- package/dist/index-Cs2whU2f.mjs +417589 -0
- package/dist/index.d.ts +5 -0
- package/dist/index.es.js +68 -0
- package/dist/index.umd.js +1644 -0
- package/dist/init-Afno6ASC.mjs +2871 -0
- package/dist/models/AlignmentRecord.d.ts +20 -0
- package/dist/models/AlignmentSegment.d.ts +51 -0
- package/dist/models/AlignmentStringUtils.d.ts +73 -0
- package/dist/models/AppSaveLoad.d.ts +76 -0
- package/dist/models/BamAlignment.d.ts +81 -0
- package/dist/models/BamRecord.d.ts +96 -0
- package/dist/models/BedRecord.d.ts +13 -0
- package/dist/models/BinIndexer.d.ts +28 -0
- package/dist/models/Chromosome.d.ts +24 -0
- package/dist/models/ChromosomeInterval.d.ts +107 -0
- package/dist/models/DataHubParser.d.ts +4 -0
- package/dist/models/DisplayedRegionModel.d.ts +114 -0
- package/dist/models/DownsamplingChoices.d.ts +4 -0
- package/dist/models/Feature.d.ts +156 -0
- package/dist/models/FeatureAggregator.d.ts +67 -0
- package/dist/models/FeatureArranger.d.ts +48 -0
- package/dist/models/FeatureSegment.d.ts +63 -0
- package/dist/models/FlankingStrategy.d.ts +72 -0
- package/dist/models/Gene.d.ts +56 -0
- package/dist/models/Genome.d.ts +48 -0
- package/dist/models/GraphNode.d.ts +46 -0
- package/dist/models/ImageRecord.d.ts +12 -0
- package/dist/models/Json5Fetcher.d.ts +10 -0
- package/dist/models/LinearDrawingModel.d.ts +75 -0
- package/dist/models/LogChoices.d.ts +4 -0
- package/dist/models/MethylCRecord.d.ts +41 -0
- package/dist/models/NavContextBuilder.d.ts +17 -0
- package/dist/models/NavigationContext.d.ts +168 -0
- package/dist/models/OpenInterval.d.ts +57 -0
- package/dist/models/QBed.d.ts +15 -0
- package/dist/models/RegionExpander.d.ts +51 -0
- package/dist/models/RegionSet.d.ts +85 -0
- package/dist/models/RepeatMaskerFeature.d.ts +61 -0
- package/dist/models/ScaleChoices.d.ts +4 -0
- package/dist/models/SequenceData.d.ts +6 -0
- package/dist/models/Snp.d.ts +34 -0
- package/dist/models/SortItemsOptions.d.ts +6 -0
- package/dist/models/TrackModel.d.ts +142 -0
- package/dist/models/binning.d.ts +29 -0
- package/dist/models/genomes/Creinhardtii506/Creinhardtii506.d.ts +18 -0
- package/dist/models/genomes/CytobandTypes.d.ts +17 -0
- package/dist/models/genomes/GRCg7b/GRCg7b.d.ts +17 -0
- package/dist/models/genomes/GRCg7w/GRCg7w.d.ts +17 -0
- package/dist/models/genomes/GenomeConfig.d.ts +16 -0
- package/dist/models/genomes/allGenomes.d.ts +201 -0
- package/dist/models/genomes/aplCal3/aplCal3.d.ts +18 -0
- package/dist/models/genomes/araTha1/araTha1.d.ts +18 -0
- package/dist/models/genomes/bosTau8/bosTau8.d.ts +18 -0
- package/dist/models/genomes/brapa/brara_chiifu_v3.0.d.ts +17 -0
- package/dist/models/genomes/calJac3/calJac3.d.ts +17 -0
- package/dist/models/genomes/calJac4/calJac4.d.ts +18 -0
- package/dist/models/genomes/canFam2/canFam2.d.ts +16 -0
- package/dist/models/genomes/canFam3/canFam3.d.ts +18 -0
- package/dist/models/genomes/canFam6/canFam6.d.ts +18 -0
- package/dist/models/genomes/ce11/ce11.d.ts +18 -0
- package/dist/models/genomes/danRer10/danRer10.d.ts +17 -0
- package/dist/models/genomes/danRer10/scaffolds.d.ts +3 -0
- package/dist/models/genomes/danRer11/danRer11.d.ts +35 -0
- package/dist/models/genomes/danRer7/danRer7.d.ts +18 -0
- package/dist/models/genomes/dm6/dm6.d.ts +35 -0
- package/dist/models/genomes/galGal5/galGal5.d.ts +35 -0
- package/dist/models/genomes/galGal6/galGal6.d.ts +18 -0
- package/dist/models/genomes/gorGor3/gorGor3.d.ts +17 -0
- package/dist/models/genomes/gorGor4/gorGor4.d.ts +18 -0
- package/dist/models/genomes/hg19/hg19.d.ts +65 -0
- package/dist/models/genomes/hg38/hg38.d.ts +103 -0
- package/dist/models/genomes/lepOcu1/lepOcu1.d.ts +17 -0
- package/dist/models/genomes/mm10/mm10.d.ts +94 -0
- package/dist/models/genomes/mm39/mm39.d.ts +27 -0
- package/dist/models/genomes/mm9/mm9.d.ts +18 -0
- package/dist/models/genomes/monDom5/monDom5.d.ts +18 -0
- package/dist/models/genomes/nomLeu3/nomLeu3.d.ts +17 -0
- package/dist/models/genomes/oryCun2/oryCun2.d.ts +18 -0
- package/dist/models/genomes/oviAri4/oviAri4.d.ts +18 -0
- package/dist/models/genomes/panTro4/panTro4.d.ts +17 -0
- package/dist/models/genomes/panTro5/panTro5.d.ts +18 -0
- package/dist/models/genomes/panTro6/panTro6.d.ts +18 -0
- package/dist/models/genomes/papAnu2/papAnu2.d.ts +17 -0
- package/dist/models/genomes/pfal3d7/pfal3d7.d.ts +39 -0
- package/dist/models/genomes/phaw5/phaw5.d.ts +17 -0
- package/dist/models/genomes/rheMac10/rheMac10.d.ts +18 -0
- package/dist/models/genomes/rheMac2/rheMac2.d.ts +17 -0
- package/dist/models/genomes/rheMac3/rheMac3.d.ts +17 -0
- package/dist/models/genomes/rheMac8/rheMac8.d.ts +18 -0
- package/dist/models/genomes/rn4/rn4.d.ts +18 -0
- package/dist/models/genomes/rn6/rn6.d.ts +18 -0
- package/dist/models/genomes/rn7/rn7.d.ts +18 -0
- package/dist/models/genomes/sacCer3/sacCer3.d.ts +30 -0
- package/dist/models/genomes/susScr11/susScr11.d.ts +18 -0
- package/dist/models/genomes/susScr3/susScr3.d.ts +18 -0
- package/dist/models/genomes/t2t-chm13-v1.1/chm13.d.ts +17 -0
- package/dist/models/genomes/t2t-chm13-v2.0/chm13v2.d.ts +18 -0
- package/dist/models/genomes/trypanosome/TbruceiLister427.d.ts +32 -0
- package/dist/models/genomes/trypanosome/TbruceiTREU927.d.ts +32 -0
- package/dist/models/genomes/virus/ebola.d.ts +47 -0
- package/dist/models/genomes/virus/hpv16.d.ts +28 -0
- package/dist/models/genomes/virus/mers.d.ts +54 -0
- package/dist/models/genomes/virus/nCoV2019.d.ts +382 -0
- package/dist/models/genomes/virus/sars.d.ts +53 -0
- package/dist/models/genomes/xenTro10/xenTro10.d.ts +18 -0
- package/dist/models/getXSpan/FeaturePlacer.d.ts +86 -0
- package/dist/models/index.d.ts +28 -0
- package/dist/models/layoutUtils.d.ts +39 -0
- package/dist/models/trackModels/trackProps.d.ts +40 -0
- package/dist/models/util.d.ts +102 -0
- package/dist/style.css +1 -0
- package/dist/track-container/index.d.ts +9 -0
- package/dist/trackConfigs/config-menu-components.tsx/AlwaysDrawLabelConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/ArrayAggregateConfig.d.ts +6 -0
- package/dist/trackConfigs/config-menu-components.tsx/BothAnchorsInViewConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/CategoryColorConfig.d.ts +15 -0
- package/dist/trackConfigs/config-menu-components.tsx/ClampHeightConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/Collapsible.d.ts +7 -0
- package/dist/trackConfigs/config-menu-components.tsx/ColorConfig.d.ts +102 -0
- package/dist/trackConfigs/config-menu-components.tsx/ColorPicker.d.ts +9 -0
- package/dist/trackConfigs/config-menu-components.tsx/CombineStrandConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/DisplayModeConfig.d.ts +21 -0
- package/dist/trackConfigs/config-menu-components.tsx/EnsemblStyleConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/FetchViewWindowConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/HeightConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/HicDataConfig.d.ts +14 -0
- package/dist/trackConfigs/config-menu-components.tsx/HiddenPixelsConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/HideMinimalItemsConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/HorizontalLineValueConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/ItalicizeTextConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/LabelConfig.d.ts +7 -0
- package/dist/trackConfigs/config-menu-components.tsx/LineWidthConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/LogScaleConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/MarkerSizeConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/MaxMethylAndDepthFilterConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/MaxRowsConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/MaxValueFilterConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/MethylColorConfig.d.ts +16 -0
- package/dist/trackConfigs/config-menu-components.tsx/MinValueFilterConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/NumberConfig.d.ts +43 -0
- package/dist/trackConfigs/config-menu-components.tsx/OmeroImageHeightConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/OpacitySilderConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/PixelsPaddingConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/PlayingConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/RowHeightConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/ScalePercentileConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/ScoreConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/SelectConfig.d.ts +11 -0
- package/dist/trackConfigs/config-menu-components.tsx/ShowHorizontalLineConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/SingleInputConfig.d.ts +14 -0
- package/dist/trackConfigs/config-menu-components.tsx/SliderConfig.d.ts +51 -0
- package/dist/trackConfigs/config-menu-components.tsx/SmoothConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/SortItemsConfig.d.ts +2 -0
- package/dist/trackConfigs/config-menu-components.tsx/SpeedConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/TrackConfigMenu.d.ts +2 -0
- package/dist/trackConfigs/config-menu-components.tsx/TrackContextMenu.d.ts +6 -0
- package/dist/trackConfigs/config-menu-components.tsx/UseDynamicColorsConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/WindowSizeConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-components.tsx/YscaleConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-models.tsx/AggregateConfig.d.ts +6 -0
- package/dist/trackConfigs/config-menu-models.tsx/AnnotationTrackConfig.d.ts +16 -0
- package/dist/trackConfigs/config-menu-models.tsx/BamTrackConfig.d.ts +6 -0
- package/dist/trackConfigs/config-menu-models.tsx/BedGraphTrackConfig.d.ts +3 -0
- package/dist/trackConfigs/config-menu-models.tsx/BedTrackConfig.d.ts +10 -0
- package/dist/trackConfigs/config-menu-models.tsx/BedcolorTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/BigBedTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/BigInteractTrackConfig.d.ts +12 -0
- package/dist/trackConfigs/config-menu-models.tsx/BigWigTrackConfig.d.ts +7 -0
- package/dist/trackConfigs/config-menu-models.tsx/BoxplotTrackConfig.d.ts +8 -0
- package/dist/trackConfigs/config-menu-models.tsx/CategoricalTrackConfig.d.ts +12 -0
- package/dist/trackConfigs/config-menu-models.tsx/DisplayModes.d.ts +49 -0
- package/dist/trackConfigs/config-menu-models.tsx/DynamicBedGraphTrackConfig.d.ts +5 -0
- package/dist/trackConfigs/config-menu-models.tsx/DynamicBedTrackConfig.d.ts +5 -0
- package/dist/trackConfigs/config-menu-models.tsx/DynamicHicTrackConfig.d.ts +5 -0
- package/dist/trackConfigs/config-menu-models.tsx/DynamicLongrangeTrackConfig.d.ts +5 -0
- package/dist/trackConfigs/config-menu-models.tsx/DynamicplotTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/DynseqTrackConfig.d.ts +7 -0
- package/dist/trackConfigs/config-menu-models.tsx/FiberTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/GeneAnnotationTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/GenomeAlignTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/HicTrackConfig.d.ts +7 -0
- package/dist/trackConfigs/config-menu-models.tsx/JasparTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/LongRangeTrackConfig.d.ts +6 -0
- package/dist/trackConfigs/config-menu-models.tsx/MatplotTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/MethylCTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/NumericalTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/OmeroTrackConfig.d.ts +5 -0
- package/dist/trackConfigs/config-menu-models.tsx/OmeroidrTrackConfig.d.ts +5 -0
- package/dist/trackConfigs/config-menu-models.tsx/QBedTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/RefBedTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/RepeatMaskerTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/RulerTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/SnpTrackConfig.d.ts +4 -0
- package/dist/trackConfigs/config-menu-models.tsx/TrackConfig.d.ts +11 -0
- package/dist/trackConfigs/config-menu-models.tsx/VcfTrackConfig.d.ts +5 -0
- package/dist/trackConfigs/config-menu-models.tsx/aggregateOptions.d.ts +12 -0
- package/dist/trackConfigs/config-menu-models.tsx/getTrackConfig.d.ts +76 -0
- package/dist/types/genome-hub.d.ts +24 -0
- package/dist/types/index.d.ts +2 -0
- package/dist/types/track-container.d.ts +99 -0
- package/dist/webworkerAll-CTtTToDi.mjs +2 -0
- package/package.json +104 -0
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@@ -0,0 +1,99 @@
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1
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import DisplayedRegionModel from "../models/DisplayedRegionModel";
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2
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import TrackModel from "../models/TrackModel";
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3
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import { IGenome } from "./genome-hub";
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4
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export interface ITrackContainerState {
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5
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tracks: TrackModel[];
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6
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highlights: Array<any>;
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7
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genomeConfig?: any;
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8
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legendWidth: number;
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9
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showGenomeNav: boolean;
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10
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onNewRegion: (startbase: number, endbase: number) => void;
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onNewHighlight: (highlightState: Array<any>) => void;
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12
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onTrackSelected: (trackSelected: TrackModel[]) => void;
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onTrackDeleted: (currenTracks: TrackModel[]) => void;
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14
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onTrackAdded: (trackModels: TrackModel[]) => void;
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15
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onNewRegionSelect: (startbase: number, endbase: number, highlightSearch?: boolean) => void;
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viewRegion: DisplayedRegionModel | undefined;
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userViewRegion: DisplayedRegionModel;
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tool: Tool | null | string;
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selectedRegionSet: any;
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setScreenshotData: any;
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isScreenShotOpen: boolean;
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currentState: any;
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}
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export interface ITrackContainerRepresentableProps {
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25
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tracks: ITrackModel[];
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26
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genomeName: string;
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27
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highlights: IHighlightInterval[];
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28
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genomeConfig: IGenome;
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29
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legendWidth: number;
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30
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showGenomeNav: boolean;
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31
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onNewRegion: (startbase: number, endbase: number) => void | null | undefined;
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32
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onNewHighlight: (highlightState: Array<any>) => void | null | undefined;
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onTrackSelected: (trackSelected: ITrackModel[]) => void | null | undefined;
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34
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onTrackDeleted: (currenTracks: ITrackModel[]) => void | null | undefined;
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35
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onTrackAdded: (trackModels: ITrackModel[]) => void | null | undefined;
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36
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onNewRegionSelect: (startbase: number, endbase: number, coordinate: GenomeCoordinate) => void | null | undefined;
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viewRegion: GenomeCoordinate | null;
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userViewRegion: {
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start: number;
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end: number;
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} | null;
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42
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tool: Tool | null;
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43
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Toolbar?: any;
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44
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selectedRegionSet: any;
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45
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setScreenshotData: any;
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46
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isScreenShotOpen: boolean;
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47
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overrideViewRegion: GenomeCoordinate | null;
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48
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currentState: any;
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49
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+
}
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50
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export type GenomeCoordinate = `chr${number | string}:${number}-${number}` | `chr${number | string}:${number}-chr${number | string}-${number}`;
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51
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export interface TrackOptions {
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52
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label?: string;
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53
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[k: string]: any;
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54
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}
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55
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export interface ITrackModelMetadata {
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56
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+
"Track Type"?: string;
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57
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genome?: string;
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58
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+
[k: string]: any;
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59
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}
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60
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export interface QueryEndpoint {
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61
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name?: string;
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62
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endpoint?: string;
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63
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}
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64
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+
export interface ITrackModel {
|
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65
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name: string;
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66
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+
type?: string;
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67
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filetype?: string;
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68
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options: TrackOptions;
|
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69
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+
url: string;
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70
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+
indexUrl?: string;
|
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71
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+
metadata: ITrackModelMetadata;
|
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72
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+
fileObj?: Blob;
|
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73
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+
queryEndpoint?: QueryEndpoint;
|
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74
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querygenome?: string;
|
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75
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+
id: number | string;
|
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76
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+
isSelected: boolean;
|
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77
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+
}
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78
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+
export interface IHighlightInterval {
|
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79
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start: number;
|
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80
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+
end: number;
|
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81
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+
display: boolean;
|
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82
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+
color: string;
|
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83
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+
tag: string;
|
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84
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+
}
|
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85
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+
export declare enum Tool {
|
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86
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Drag = 0,
|
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87
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+
Reorder = 1,
|
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88
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+
Highlight = 2,
|
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89
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+
Zoom = 3,
|
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90
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+
PanLeft = 4,
|
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91
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+
PanRight = 5,
|
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92
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+
ZoomOutOneThirdFold = 6,
|
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93
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+
ZoomOutOneFold = 7,
|
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94
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+
ZoomOutFiveFold = 8,
|
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95
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+
ZoomInOneThirdFold = 9,
|
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96
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+
ZoomInOneFold = 10,
|
|
97
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+
ZoomInFiveFold = 11,
|
|
98
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highlightMenu = 12
|
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99
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+
}
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package/package.json
ADDED
|
@@ -0,0 +1,104 @@
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1
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{
|
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2
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"name": "wuepgg3-track",
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3
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"private": false,
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4
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"version": "1.0.2",
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5
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"main": "dist/index.umd.js",
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6
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"module": "dist/index.es.js",
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7
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"types": "dist/index.d.ts",
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8
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"exports": {
|
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9
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".": {
|
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10
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"import": "./dist/index.es.js",
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11
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"require": "./dist/index.umd.js",
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12
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"types": "./dist/index.d.ts"
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13
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},
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14
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"./style.css": "./dist/style.css"
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15
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},
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16
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"files": [
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17
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"dist"
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18
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],
|
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19
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"publishConfig": {
|
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20
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"access": "public"
|
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21
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+
},
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22
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+
"scripts": {
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23
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+
"dev": "vite",
|
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24
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+
"build": "tsc && vite build",
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25
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+
"lint": "eslint . --ext ts,tsx --report-unused-disable-directives --max-warnings 0",
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26
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+
"preview": "vite preview",
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27
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+
"test": "vitest run",
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28
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"watch": "vitest"
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29
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+
},
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30
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"dependencies": {
|
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31
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+
"@dnd-kit/core": "^6.3.1",
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32
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"@dnd-kit/sortable": "^8.0.0",
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33
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+
"@dnd-kit/utilities": "^3.2.2",
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34
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"@gmod/bam": "^2.0.2",
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35
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"@gmod/bbi": "^4.0.4",
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36
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"@gmod/tabix": "^1.5.13",
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37
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"@gmod/twobit": "^1.1.14",
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38
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+
"@gmod/vcf": "^5.0.10",
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39
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+
"@juggle/resize-observer": "^0.7.1",
|
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40
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+
"@msgpack/msgpack": "^3.0.0-beta2",
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41
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+
"@popperjs/core": "^2.11.8",
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42
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+
"@primer/octicons-react": "^19.11.0",
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43
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+
"@reduxjs/toolkit": "^2.4.0",
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44
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+
"@rollup/plugin-url": "^8.0.2",
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45
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+
"@types/d3-scale": "^4.0.8",
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46
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+
"@types/lodash": "^4.17.6",
|
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47
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+
"@types/pako": "^2.0.3",
|
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48
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+
"3dmol": "^2.4.0",
|
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49
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+
"array-smooth": "^1.0.0",
|
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50
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+
"color-rgba": "^3.0.0",
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51
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+
"d3": "^7.9.0",
|
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52
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+
"flexlayout-react": "^0.8.1",
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53
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+
"fuse.js": "^7.0.0",
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54
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+
"generic-filehandle": "^3.1.2",
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55
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+
"grommet": "^2.37.0",
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56
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+
"hic-straw": "^2.1.1",
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57
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+
"isomorphic-fetch": "^3.0.0",
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58
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+
"jquery": "^3.7.1",
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59
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+
"json5": "^2.2.3",
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60
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+
"jszip": "^3.10.1",
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61
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+
"lodash": "^4.17.21",
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62
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+
"memoize-one": "^6.0.0",
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63
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+
"pako": "^2.1.0",
|
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64
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+
"papaparse": "^5.4.1",
|
|
65
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+
"parse-color": "^1.0.0",
|
|
66
|
+
"percentile": "^1.6.0",
|
|
67
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+
"pixi.js": "^8.5.2",
|
|
68
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+
"plotly.js": "^2.35.2",
|
|
69
|
+
"point-in-polygon": "^1.1.0",
|
|
70
|
+
"rc-drawer": "^7.2.0",
|
|
71
|
+
"react-autosuggest": "^10.1.0",
|
|
72
|
+
"react-color": "^2.19.3",
|
|
73
|
+
"react-compound-slider": "^3.4.0",
|
|
74
|
+
"react-copy-to-clipboard": "^5.1.0",
|
|
75
|
+
"react-modal": "^3.16.1",
|
|
76
|
+
"react-plotly.js": "^2.6.0",
|
|
77
|
+
"react-popper": "^2.3.0",
|
|
78
|
+
"uuid": "^11.1.0",
|
|
79
|
+
"vite-plugin-dts": "^2.1.0",
|
|
80
|
+
"vite-plugin-node-polyfills": "^0.23.0"
|
|
81
|
+
},
|
|
82
|
+
"devDependencies": {
|
|
83
|
+
"@types/d3": "^7.4.3",
|
|
84
|
+
"@types/node": "^20.16.14",
|
|
85
|
+
"@types/react": ">=18.0.0 <=19.0.0",
|
|
86
|
+
"@types/react-dom": ">=18.0.0 <=19.0.0",
|
|
87
|
+
"@types/react-plotly.js": "^2.6.3",
|
|
88
|
+
"@typescript-eslint/eslint-plugin": "^6.21.0",
|
|
89
|
+
"@typescript-eslint/parser": "^6.21.0",
|
|
90
|
+
"@vitejs/plugin-react": "^4.2.1",
|
|
91
|
+
"eslint": "^8.56.0",
|
|
92
|
+
"eslint-plugin-react-hooks": "^4.6.0",
|
|
93
|
+
"eslint-plugin-react-refresh": "^0.4.5",
|
|
94
|
+
"tailwindcss": "^3.4.14",
|
|
95
|
+
"typescript": "^5.2.2",
|
|
96
|
+
"vite": "^5.1.0",
|
|
97
|
+
"react": "^19.0.0",
|
|
98
|
+
"react-dom": "^19.0.0"
|
|
99
|
+
},
|
|
100
|
+
"peerDependencies": {
|
|
101
|
+
"react": ">=18.0.0 <=19.0.0",
|
|
102
|
+
"react-dom": ">=18.0.0 <=19.0.0"
|
|
103
|
+
}
|
|
104
|
+
}
|