visualifyjs 2.5.3-2.dev → 2.5.3-9-dev

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Files changed (139) hide show
  1. package/.github/workflows/{static.yml.bak → build.yaml} +51 -51
  2. package/LICENSE +674 -674
  3. package/README.md +40 -58
  4. package/config-overrides.js +31 -31
  5. package/dist/visualify.js +3 -3
  6. package/docs/CLI.md +15 -0
  7. package/docs/{docs/README.md → README.md} +41 -65
  8. package/docs/{docs/Rechart → Rechart}/bar.md +190 -190
  9. package/docs/{docs/Rechart → Rechart}/funnel.md +193 -241
  10. package/docs/{docs/Rechart → Rechart}/line.md +355 -355
  11. package/docs/{docs/Rechart → Rechart}/pie.md +225 -225
  12. package/docs/{docs/Rechart → Rechart}/radar.md +253 -253
  13. package/docs/{docs/_404.md → _404.md} +51 -51
  14. package/docs/{docs/_coverpage.md → _coverpage.md} +11 -11
  15. package/docs/{docs/_sidebar.md → _sidebar.md} +42 -44
  16. package/docs/{docs/components → components}/dotBio.md +34 -34
  17. package/docs/{docs/components → components}/echart.md +82 -82
  18. package/docs/{docs/components → components}/html.md +34 -34
  19. package/docs/{docs/components → components}/macaron.md +145 -145
  20. package/docs/components/markdown.md +0 -0
  21. package/docs/{docs/components → components}/more.md +142 -142
  22. package/docs/{docs/components → components}/plotly.md +62 -62
  23. package/docs/{docs/components → components}/scatterL.md +70 -70
  24. package/docs/{docs/components → components}/visium.md +56 -56
  25. package/docs/{docs/configuration.md → configuration.md} +123 -121
  26. package/docs/{docs/deploy.md → deploy.md} +23 -31
  27. package/docs/index.html +70 -70
  28. package/docs/log.md +1 -0
  29. package/docs/manifest.json +23 -23
  30. package/docs/{docs/more-pages.md → more-pages.md} +23 -23
  31. package/docs/{docs/quickstart.md → quickstart.md} +115 -124
  32. package/docs/{docs/rechart-attributes.md → rechart-attributes.md} +74 -74
  33. package/docs/{docs/rechart-basic-usage.md → rechart-basic-usage.md} +162 -162
  34. package/docs/static/css/fluff-stuff.css +169 -169
  35. package/docs/static/css/font-awesome.min.css +4 -4
  36. package/docs/static/css/visualify.css +25 -25
  37. package/docs/static/js/configuration.js +448 -448
  38. package/docs/static/js/visualify.js +24 -23
  39. package/docs/theme.md +3 -0
  40. package/package.json +74 -83
  41. package/rollup.config.mjs +75 -75
  42. package/src/_css/404.css +115 -115
  43. package/src/_css/App.css +37 -37
  44. package/src/_css/autoSuggestion.css +26 -26
  45. package/src/_css/circular-progress.css +32 -32
  46. package/src/_css/index.css +36 -36
  47. package/src/_css/modern.css +24 -24
  48. package/src/_media/corner.svg +8 -8
  49. package/src/_media/download.svg +3 -3
  50. package/src/_media/logo.svg +14 -14
  51. package/src/_test/App.test.js +15 -15
  52. package/src/_utils/reportWebVitals.js +13 -13
  53. package/src/core/appContext.js +27 -27
  54. package/src/core/components/Scatter.js +188 -188
  55. package/src/core/components/ScatterBio.js +572 -572
  56. package/src/core/components/VisiumPlot.js +165 -165
  57. package/src/core/components/browser.js +42 -42
  58. package/src/core/components/dotplot.js +413 -413
  59. package/src/core/components/html.js +29 -29
  60. package/src/core/components/list.js +178 -178
  61. package/src/core/components/macaron.js +201 -201
  62. package/src/core/components/markdown.js +56 -56
  63. package/src/core/components/parser.scatterBio.js +579 -587
  64. package/src/core/components/ratio.js +80 -80
  65. package/src/core/components/scatterL.js +173 -173
  66. package/src/core/components/searchbar.js +131 -131
  67. package/src/core/components/selection.js +193 -193
  68. package/src/core/components/timeline.js +281 -281
  69. package/src/core/components/visium.js +97 -97
  70. package/src/core/fetch/condfetch.js +82 -82
  71. package/src/core/fetch/fetch.js +92 -92
  72. package/src/core/fetch/json.js +29 -29
  73. package/src/core/fetch/vfetch.js +42 -42
  74. package/src/core/liveEditor.js +44 -44
  75. package/src/core/modules/codeEditorWithPreview.js +104 -104
  76. package/src/core/modules/echarts/common.js +20 -20
  77. package/src/core/modules/echarts/presetHandler.js +41 -41
  78. package/src/core/modules/echarts/presets/esodev.chromium.js +172 -172
  79. package/src/core/modules/echarts/presets/esodev.codex.js +130 -130
  80. package/src/core/modules/echarts/presets/esodev.visium.js +123 -123
  81. package/src/core/modules/echarts/presets/mmtrbc.js +186 -186
  82. package/src/core/modules/echarts.js +71 -71
  83. package/src/core/modules/echartsUtils.js +43 -43
  84. package/src/core/modules/echartswitcher.js +152 -152
  85. package/src/core/modules/replotly/presetHandler.js +24 -24
  86. package/src/core/modules/replotly/presets/minimum.js +18 -18
  87. package/src/core/modules/replotly/presets/mmtrbc.dot.js +114 -114
  88. package/src/core/modules/replotly/presets/mmtrbc.violin.js +100 -100
  89. package/src/core/modules/replotly.js +71 -71
  90. package/src/core/pages/404.js +50 -50
  91. package/src/core/pages/error.js +27 -27
  92. package/src/core/pages/jsonPage.js +62 -62
  93. package/src/core/pages/loading.js +44 -44
  94. package/src/core/parser/echart.data.js +183 -183
  95. package/src/core/parser/echart.features.js +125 -125
  96. package/src/core/parser/echart.general.js +143 -147
  97. package/src/core/parser/echart.hilbert.js +57 -57
  98. package/src/core/parser/echart.parser.js +210 -210
  99. package/src/core/parser/echart.series.js +67 -67
  100. package/src/core/parser/echart.types.js +76 -76
  101. package/src/core/parser/plotly.config.js +10 -10
  102. package/src/core/parser/plotly.data.js +132 -132
  103. package/src/core/parser/plotly.layout.js +9 -9
  104. package/src/core/parser/plotly.violin.js +18 -18
  105. package/src/core/recharts.js +62 -62
  106. package/src/core/router/alias.js +49 -49
  107. package/src/core/router/jsonRouter.js +31 -31
  108. package/src/core/themes/modern.js +32 -32
  109. package/src/core/themes/themeSelector.js +33 -33
  110. package/src/core/visualify.js +47 -47
  111. package/src/core/widgets/circularProgress.js +23 -23
  112. package/src/core/widgets/controller.js +83 -83
  113. package/src/core/widgets/errorBoundary.js +36 -36
  114. package/src/core/widgets/footer.js +177 -177
  115. package/src/core/widgets/header.js +234 -234
  116. package/src/core/widgets/layout/Grid.js +31 -31
  117. package/src/core/widgets/layout.js +36 -36
  118. package/src/core/widgets/mapping.js +42 -42
  119. package/src/index.js +62 -62
  120. package/src/setupTests.js +5 -5
  121. package/docs/docs/CLI.md +0 -34
  122. package/docs/docs/Rechart/scatter.md +0 -298
  123. package/docs/docs/log.md +0 -9
  124. package/docs/docs/static/logo/favicon.ico +0 -0
  125. package/docs/docs/static/logo/logo_128x128.png +0 -0
  126. package/docs/docs/static/logo/logo_192x192.png +0 -0
  127. package/docs/docs/static/logo/logo_256x256.png +0 -0
  128. package/docs/docs/static/logo/logo_512x512.png +0 -0
  129. package/docs/docs/static/logo/logo_64x64.png +0 -0
  130. package/docs/docs/theme.md +0 -5
  131. /package/docs/{docs/Rechart → Rechart}/geo.md +0 -0
  132. /package/docs/{docs/Rechart → Rechart}/liquidfill.md +0 -0
  133. /package/docs/{docs/Rechart → Rechart}/polar.md +0 -0
  134. /package/docs/{docs/Rechart → Rechart}/sankey.md +0 -0
  135. /package/docs/{docs/Rechart/sunburst.md → Rechart/scatter.md} +0 -0
  136. /package/docs/{docs/Rechart/tree.md → Rechart/sunburst.md} +0 -0
  137. /package/docs/{docs/Rechart/wordcloud.md → Rechart/tree.md} +0 -0
  138. /package/docs/{docs/components/markdown.md → Rechart/wordcloud.md} +0 -0
  139. /package/docs/{docs/static → static}/_images/deploy-github-pages.png +0 -0
@@ -1,177 +1,177 @@
1
- import React from 'react';
2
- import DOMPurify from 'dompurify';
3
- import { Container, Row, Col } from 'react-bootstrap';
4
- import { ReactComponent as ICON } from '../../_media/icon.svg';
5
- import pkg from '../../../package.json';
6
-
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- function Vfooter({ config }) {
8
- // Download -------------------------------------------------------------------------
9
- const { download, download_style } = config;
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-
11
- const _renderDownloads = () => {
12
- if (download === undefined) return null;
13
- if (Object.keys(download).length === 0) return null;
14
-
15
- let button_style = {
16
- marginRight: '1rem',
17
- };
18
-
19
- if (
20
- download_style !== undefined &&
21
- typeof download_style === 'object'
22
- ) {
23
- button_style = download_style;
24
- }
25
-
26
- return (
27
- <Row>
28
- <Col>
29
- <b style={{ marginRight: '1rem' }}>Download: </b>
30
- {Object.keys(download).map((key) => (
31
- <a
32
- key={key}
33
- href={download[key]}
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- download>
35
- <button style={button_style}>{`${key}`}</button>
36
- </a>
37
- ))}
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- </Col>
39
- </Row>
40
- );
41
- };
42
-
43
- // References -------------------------------------------------------------------------
44
- // get references config for rendering references
45
- const { references, references_style } = config;
46
-
47
- const _renderRefs = () => {
48
- let refs = [];
49
- var ref_list_style = references_style;
50
- if (references === undefined || references.length === 0) return null;
51
- if (references_style === undefined || references_style === '')
52
- ref_list_style = 'circle';
53
-
54
- references.map((reference, index) =>
55
- refs.push(
56
- <li
57
- key={index}
58
- className={`reference-item ${ref_list_style}`}
59
- dangerouslySetInnerHTML={{
60
- __html: DOMPurify.sanitize(reference),
61
- }}
62
- />,
63
- ),
64
- );
65
-
66
- return (
67
- <Row>
68
- <Col>
69
- <ul className='reference-list'>{refs}</ul>
70
- </Col>
71
- </Row>
72
- );
73
- };
74
-
75
- // CopyRight -------------------------------------------------------------------------
76
- const { copyright = pkg.name } = config;
77
- const _renderCopyRight = () => {
78
- return (
79
- <Col>
80
- <p
81
- className='mb-0'
82
- dangerouslySetInnerHTML={{
83
- __html: DOMPurify.sanitize(
84
- `${copyright} Copyright © ${new Date().getFullYear()} powered by ${
85
- pkg.name
86
- }@<a href="${pkg.homepage}">${pkg.version}</a>`,
87
- ),
88
- }}
89
- />
90
- </Col>
91
- );
92
- };
93
-
94
- // Icons -------------------------------------------------------------------------
95
- const { icons } = config;
96
-
97
- const _renderIcons = () => {
98
- let Icons = [];
99
-
100
- if (icons === undefined) {
101
- Icons.push(
102
- <li
103
- key='visualify'
104
- className='list-inline-item'>
105
- <a href='https://visualify.pharmacy.arizona.edu/'>
106
- <ICON />
107
- </a>
108
- </li>,
109
- );
110
-
111
- Icons.push(
112
- <li
113
- key='v_github'
114
- className='list-inline-item'>
115
- <a href='https://github.com/visualify/visualify.js'>
116
- <i className='fa-brands fa-github fa-lg'></i>
117
- </a>
118
- </li>,
119
- );
120
- } else {
121
- for (const [icon, link] of Object.entries(icons)) {
122
- let IconElement = null;
123
- if (icon.startsWith('fa')) {
124
- IconElement = <i className={`${icon}`} />;
125
- } else if (icon.startsWith('<svg')) {
126
- IconElement = (
127
- <div
128
- dangerouslySetInnerHTML={{
129
- __html: DOMPurify.sanitize(icon),
130
- }}
131
- />
132
- );
133
- } else {
134
- IconElement = (
135
- <img
136
- src={icon}
137
- alt=''
138
- />
139
- );
140
- }
141
- Icons.push(
142
- <li
143
- key={link}
144
- className='list-inline-item'>
145
- <a href={link}>{IconElement}</a>
146
- </li>,
147
- );
148
- }
149
- }
150
-
151
- return (
152
- <Col>
153
- <ul
154
- id='footer_icon'
155
- className='list-inline mb-0'>
156
- {Icons}
157
- </ul>
158
- </Col>
159
- );
160
- };
161
-
162
- return (
163
- <footer className='v-footer'>
164
- <Container className='py-4 py-lg-5'>
165
- {_renderDownloads()}
166
- {_renderRefs()}
167
- <hr />
168
- <Row className='text-muted d-flex justify-content-between align-items-center pt-3 list-inline mb-0'>
169
- {_renderCopyRight()}
170
- {_renderIcons()}
171
- </Row>
172
- </Container>
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- </footer>
174
- );
175
- }
176
-
177
- export default Vfooter;
1
+ import React from 'react';
2
+ import DOMPurify from 'dompurify';
3
+ import { Container, Row, Col } from 'react-bootstrap';
4
+ import { ReactComponent as ICON } from '../../_media/icon.svg';
5
+ import pkg from '../../../package.json';
6
+
7
+ function Vfooter({ config }) {
8
+ // Download -------------------------------------------------------------------------
9
+ const { download, download_style } = config;
10
+
11
+ const _renderDownloads = () => {
12
+ if (download === undefined) return null;
13
+ if (Object.keys(download).length === 0) return null;
14
+
15
+ let button_style = {
16
+ marginRight: '1rem',
17
+ };
18
+
19
+ if (
20
+ download_style !== undefined &&
21
+ typeof download_style === 'object'
22
+ ) {
23
+ button_style = download_style;
24
+ }
25
+
26
+ return (
27
+ <Row>
28
+ <Col>
29
+ <b style={{ marginRight: '1rem' }}>Download: </b>
30
+ {Object.keys(download).map((key) => (
31
+ <a
32
+ key={key}
33
+ href={download[key]}
34
+ download>
35
+ <button style={button_style}>{`${key}`}</button>
36
+ </a>
37
+ ))}
38
+ </Col>
39
+ </Row>
40
+ );
41
+ };
42
+
43
+ // References -------------------------------------------------------------------------
44
+ // get references config for rendering references
45
+ const { references, references_style } = config;
46
+
47
+ const _renderRefs = () => {
48
+ let refs = [];
49
+ var ref_list_style = references_style;
50
+ if (references === undefined || references.length === 0) return null;
51
+ if (references_style === undefined || references_style === '')
52
+ ref_list_style = 'circle';
53
+
54
+ references.map((reference, index) =>
55
+ refs.push(
56
+ <li
57
+ key={index}
58
+ className={`reference-item ${ref_list_style}`}
59
+ dangerouslySetInnerHTML={{
60
+ __html: DOMPurify.sanitize(reference),
61
+ }}
62
+ />,
63
+ ),
64
+ );
65
+
66
+ return (
67
+ <Row>
68
+ <Col>
69
+ <ul className='reference-list'>{refs}</ul>
70
+ </Col>
71
+ </Row>
72
+ );
73
+ };
74
+
75
+ // CopyRight -------------------------------------------------------------------------
76
+ const { copyright = pkg.name } = config;
77
+ const _renderCopyRight = () => {
78
+ return (
79
+ <Col>
80
+ <p
81
+ className='mb-0'
82
+ dangerouslySetInnerHTML={{
83
+ __html: DOMPurify.sanitize(
84
+ `${copyright} Copyright © ${new Date().getFullYear()} powered by ${
85
+ pkg.name
86
+ }@<a href="${pkg.homepage}">${pkg.version}</a>`,
87
+ ),
88
+ }}
89
+ />
90
+ </Col>
91
+ );
92
+ };
93
+
94
+ // Icons -------------------------------------------------------------------------
95
+ const { icons } = config;
96
+
97
+ const _renderIcons = () => {
98
+ let Icons = [];
99
+
100
+ if (icons === undefined) {
101
+ Icons.push(
102
+ <li
103
+ key='visualify'
104
+ className='list-inline-item'>
105
+ <a href='https://visualify.pharmacy.arizona.edu/'>
106
+ <ICON />
107
+ </a>
108
+ </li>,
109
+ );
110
+
111
+ Icons.push(
112
+ <li
113
+ key='v_github'
114
+ className='list-inline-item'>
115
+ <a href='https://github.com/visualify'>
116
+ <i className='fa-brands fa-github fa-lg'></i>
117
+ </a>
118
+ </li>,
119
+ );
120
+ } else {
121
+ for (const [icon, link] of Object.entries(icons)) {
122
+ let IconElement = null;
123
+ if (icon.startsWith('fa')) {
124
+ IconElement = <i className={`${icon}`} />;
125
+ } else if (icon.startsWith('<svg')) {
126
+ IconElement = (
127
+ <div
128
+ dangerouslySetInnerHTML={{
129
+ __html: DOMPurify.sanitize(icon),
130
+ }}
131
+ />
132
+ );
133
+ } else {
134
+ IconElement = (
135
+ <img
136
+ src={icon}
137
+ alt=''
138
+ />
139
+ );
140
+ }
141
+ Icons.push(
142
+ <li
143
+ key={link}
144
+ className='list-inline-item'>
145
+ <a href={link}>{IconElement}</a>
146
+ </li>,
147
+ );
148
+ }
149
+ }
150
+
151
+ return (
152
+ <Col>
153
+ <ul
154
+ id='footer_icon'
155
+ className='list-inline mb-0'>
156
+ {Icons}
157
+ </ul>
158
+ </Col>
159
+ );
160
+ };
161
+
162
+ return (
163
+ <footer className='v-footer'>
164
+ <Container className='py-4 py-lg-5'>
165
+ {_renderDownloads()}
166
+ {_renderRefs()}
167
+ <hr />
168
+ <Row className='text-muted d-flex justify-content-between align-items-center pt-3 list-inline mb-0'>
169
+ {_renderCopyRight()}
170
+ {_renderIcons()}
171
+ </Row>
172
+ </Container>
173
+ </footer>
174
+ );
175
+ }
176
+
177
+ export default Vfooter;