visualifyjs 2.5.3-2.dev → 2.5.3-9-dev

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Files changed (139) hide show
  1. package/.github/workflows/{static.yml.bak → build.yaml} +51 -51
  2. package/LICENSE +674 -674
  3. package/README.md +40 -58
  4. package/config-overrides.js +31 -31
  5. package/dist/visualify.js +3 -3
  6. package/docs/CLI.md +15 -0
  7. package/docs/{docs/README.md → README.md} +41 -65
  8. package/docs/{docs/Rechart → Rechart}/bar.md +190 -190
  9. package/docs/{docs/Rechart → Rechart}/funnel.md +193 -241
  10. package/docs/{docs/Rechart → Rechart}/line.md +355 -355
  11. package/docs/{docs/Rechart → Rechart}/pie.md +225 -225
  12. package/docs/{docs/Rechart → Rechart}/radar.md +253 -253
  13. package/docs/{docs/_404.md → _404.md} +51 -51
  14. package/docs/{docs/_coverpage.md → _coverpage.md} +11 -11
  15. package/docs/{docs/_sidebar.md → _sidebar.md} +42 -44
  16. package/docs/{docs/components → components}/dotBio.md +34 -34
  17. package/docs/{docs/components → components}/echart.md +82 -82
  18. package/docs/{docs/components → components}/html.md +34 -34
  19. package/docs/{docs/components → components}/macaron.md +145 -145
  20. package/docs/components/markdown.md +0 -0
  21. package/docs/{docs/components → components}/more.md +142 -142
  22. package/docs/{docs/components → components}/plotly.md +62 -62
  23. package/docs/{docs/components → components}/scatterL.md +70 -70
  24. package/docs/{docs/components → components}/visium.md +56 -56
  25. package/docs/{docs/configuration.md → configuration.md} +123 -121
  26. package/docs/{docs/deploy.md → deploy.md} +23 -31
  27. package/docs/index.html +70 -70
  28. package/docs/log.md +1 -0
  29. package/docs/manifest.json +23 -23
  30. package/docs/{docs/more-pages.md → more-pages.md} +23 -23
  31. package/docs/{docs/quickstart.md → quickstart.md} +115 -124
  32. package/docs/{docs/rechart-attributes.md → rechart-attributes.md} +74 -74
  33. package/docs/{docs/rechart-basic-usage.md → rechart-basic-usage.md} +162 -162
  34. package/docs/static/css/fluff-stuff.css +169 -169
  35. package/docs/static/css/font-awesome.min.css +4 -4
  36. package/docs/static/css/visualify.css +25 -25
  37. package/docs/static/js/configuration.js +448 -448
  38. package/docs/static/js/visualify.js +24 -23
  39. package/docs/theme.md +3 -0
  40. package/package.json +74 -83
  41. package/rollup.config.mjs +75 -75
  42. package/src/_css/404.css +115 -115
  43. package/src/_css/App.css +37 -37
  44. package/src/_css/autoSuggestion.css +26 -26
  45. package/src/_css/circular-progress.css +32 -32
  46. package/src/_css/index.css +36 -36
  47. package/src/_css/modern.css +24 -24
  48. package/src/_media/corner.svg +8 -8
  49. package/src/_media/download.svg +3 -3
  50. package/src/_media/logo.svg +14 -14
  51. package/src/_test/App.test.js +15 -15
  52. package/src/_utils/reportWebVitals.js +13 -13
  53. package/src/core/appContext.js +27 -27
  54. package/src/core/components/Scatter.js +188 -188
  55. package/src/core/components/ScatterBio.js +572 -572
  56. package/src/core/components/VisiumPlot.js +165 -165
  57. package/src/core/components/browser.js +42 -42
  58. package/src/core/components/dotplot.js +413 -413
  59. package/src/core/components/html.js +29 -29
  60. package/src/core/components/list.js +178 -178
  61. package/src/core/components/macaron.js +201 -201
  62. package/src/core/components/markdown.js +56 -56
  63. package/src/core/components/parser.scatterBio.js +579 -587
  64. package/src/core/components/ratio.js +80 -80
  65. package/src/core/components/scatterL.js +173 -173
  66. package/src/core/components/searchbar.js +131 -131
  67. package/src/core/components/selection.js +193 -193
  68. package/src/core/components/timeline.js +281 -281
  69. package/src/core/components/visium.js +97 -97
  70. package/src/core/fetch/condfetch.js +82 -82
  71. package/src/core/fetch/fetch.js +92 -92
  72. package/src/core/fetch/json.js +29 -29
  73. package/src/core/fetch/vfetch.js +42 -42
  74. package/src/core/liveEditor.js +44 -44
  75. package/src/core/modules/codeEditorWithPreview.js +104 -104
  76. package/src/core/modules/echarts/common.js +20 -20
  77. package/src/core/modules/echarts/presetHandler.js +41 -41
  78. package/src/core/modules/echarts/presets/esodev.chromium.js +172 -172
  79. package/src/core/modules/echarts/presets/esodev.codex.js +130 -130
  80. package/src/core/modules/echarts/presets/esodev.visium.js +123 -123
  81. package/src/core/modules/echarts/presets/mmtrbc.js +186 -186
  82. package/src/core/modules/echarts.js +71 -71
  83. package/src/core/modules/echartsUtils.js +43 -43
  84. package/src/core/modules/echartswitcher.js +152 -152
  85. package/src/core/modules/replotly/presetHandler.js +24 -24
  86. package/src/core/modules/replotly/presets/minimum.js +18 -18
  87. package/src/core/modules/replotly/presets/mmtrbc.dot.js +114 -114
  88. package/src/core/modules/replotly/presets/mmtrbc.violin.js +100 -100
  89. package/src/core/modules/replotly.js +71 -71
  90. package/src/core/pages/404.js +50 -50
  91. package/src/core/pages/error.js +27 -27
  92. package/src/core/pages/jsonPage.js +62 -62
  93. package/src/core/pages/loading.js +44 -44
  94. package/src/core/parser/echart.data.js +183 -183
  95. package/src/core/parser/echart.features.js +125 -125
  96. package/src/core/parser/echart.general.js +143 -147
  97. package/src/core/parser/echart.hilbert.js +57 -57
  98. package/src/core/parser/echart.parser.js +210 -210
  99. package/src/core/parser/echart.series.js +67 -67
  100. package/src/core/parser/echart.types.js +76 -76
  101. package/src/core/parser/plotly.config.js +10 -10
  102. package/src/core/parser/plotly.data.js +132 -132
  103. package/src/core/parser/plotly.layout.js +9 -9
  104. package/src/core/parser/plotly.violin.js +18 -18
  105. package/src/core/recharts.js +62 -62
  106. package/src/core/router/alias.js +49 -49
  107. package/src/core/router/jsonRouter.js +31 -31
  108. package/src/core/themes/modern.js +32 -32
  109. package/src/core/themes/themeSelector.js +33 -33
  110. package/src/core/visualify.js +47 -47
  111. package/src/core/widgets/circularProgress.js +23 -23
  112. package/src/core/widgets/controller.js +83 -83
  113. package/src/core/widgets/errorBoundary.js +36 -36
  114. package/src/core/widgets/footer.js +177 -177
  115. package/src/core/widgets/header.js +234 -234
  116. package/src/core/widgets/layout/Grid.js +31 -31
  117. package/src/core/widgets/layout.js +36 -36
  118. package/src/core/widgets/mapping.js +42 -42
  119. package/src/index.js +62 -62
  120. package/src/setupTests.js +5 -5
  121. package/docs/docs/CLI.md +0 -34
  122. package/docs/docs/Rechart/scatter.md +0 -298
  123. package/docs/docs/log.md +0 -9
  124. package/docs/docs/static/logo/favicon.ico +0 -0
  125. package/docs/docs/static/logo/logo_128x128.png +0 -0
  126. package/docs/docs/static/logo/logo_192x192.png +0 -0
  127. package/docs/docs/static/logo/logo_256x256.png +0 -0
  128. package/docs/docs/static/logo/logo_512x512.png +0 -0
  129. package/docs/docs/static/logo/logo_64x64.png +0 -0
  130. package/docs/docs/theme.md +0 -5
  131. /package/docs/{docs/Rechart → Rechart}/geo.md +0 -0
  132. /package/docs/{docs/Rechart → Rechart}/liquidfill.md +0 -0
  133. /package/docs/{docs/Rechart → Rechart}/polar.md +0 -0
  134. /package/docs/{docs/Rechart → Rechart}/sankey.md +0 -0
  135. /package/docs/{docs/Rechart/sunburst.md → Rechart/scatter.md} +0 -0
  136. /package/docs/{docs/Rechart/tree.md → Rechart/sunburst.md} +0 -0
  137. /package/docs/{docs/Rechart/wordcloud.md → Rechart/tree.md} +0 -0
  138. /package/docs/{docs/components/markdown.md → Rechart/wordcloud.md} +0 -0
  139. /package/docs/{docs/static → static}/_images/deploy-github-pages.png +0 -0
@@ -1,29 +1,29 @@
1
- /*
2
- * @Author : Lihao leolihao@arizona.edu
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- * @Date : 2023-12-25 21:00:26
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- * @FilePath : /visualifyjs/src/core/components/html.js
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- * @Description :
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- * Copyright (c) 2023 by Lihao (leolihao@arizona.edu), All Rights Reserved.
7
- */
8
- import React from 'react';
9
- import DOMPurify from 'dompurify';
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-
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- function NaiveHTML({ props, style }) {
12
- const { className, style: _style } = props;
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-
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- let { html } = props;
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-
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- // Sanitize the HTML using DOMPurify
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- html = DOMPurify.sanitize(html);
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-
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- return (
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- <div
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- style={{ ...style, ..._style }}
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- className={className}
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- dangerouslySetInnerHTML={{ __html: html }}>
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- {/* The sanitized HTML will be inserted here */}
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- </div>
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- );
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- }
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-
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- export default NaiveHTML;
1
+ /*
2
+ * @Author : Lihao leolihao@arizona.edu
3
+ * @Date : 2023-12-25 21:00:26
4
+ * @FilePath : /visualifyjs/src/core/components/html.js
5
+ * @Description :
6
+ * Copyright (c) 2023 by Lihao (leolihao@arizona.edu), All Rights Reserved.
7
+ */
8
+ import React from 'react';
9
+ import DOMPurify from 'dompurify';
10
+
11
+ function NaiveHTML({ props, style }) {
12
+ const { className, style: _style } = props;
13
+
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+ let { html } = props;
15
+
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+ // Sanitize the HTML using DOMPurify
17
+ html = DOMPurify.sanitize(html);
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+
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+ return (
20
+ <div
21
+ style={{ ...style, ..._style }}
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+ className={className}
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+ dangerouslySetInnerHTML={{ __html: html }}>
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+ {/* The sanitized HTML will be inserted here */}
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+ </div>
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+ );
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+ }
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+
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+ export default NaiveHTML;
@@ -1,178 +1,178 @@
1
- import React, { useState } from 'react';
2
- import { Button, InputGroup, FormControl, ListGroup } from 'react-bootstrap';
3
- import { useAppContext } from '../appContext';
4
- import SearchBar from './searchbar';
5
-
6
- const List = ({ props, style }) => {
7
- const { debug } = props;
8
-
9
- const { style: _style_parsed = {} } = props;
10
- const { class: className, ...customStyle } = _style_parsed;
11
-
12
- // if debug is true, then border is red, else no border
13
- style = {
14
- ...style,
15
- border: debug ? '1px solid red' : 'none',
16
- margin: '0px auto',
17
- width: '200px',
18
- ...customStyle,
19
- };
20
-
21
- // Title & Subtitle--------------------------------------------------
22
- const { id = 'genelist', title, subtitle } = props;
23
- // Render title
24
- const renderTitle = () => {
25
- return title && <h3>{title}</h3>;
26
- };
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-
28
- const renderSubtitle = () => {
29
- return subtitle && <h5>{subtitle}</h5>;
30
- };
31
- // Search | Typing --------------------------------------------------
32
- const { search } = props;
33
- const renderSearch = () => {
34
- return search && <SearchBar props={search} />;
35
- };
36
- // Input --------------------------------------------------
37
- const { input } = props;
38
-
39
- const [items, setItems] = useState([]);
40
- const [inputValue, setInputValue] = useState('');
41
-
42
- const handleInputChange = (event) => {
43
- setInputValue(event.target.value);
44
- };
45
-
46
- const renderInput = () => {
47
- return (
48
- input && (
49
- <FormControl
50
- placeholder={input.placeholder}
51
- aria-label={input.ariaLabel}
52
- aria-describedby='basic-addon2'
53
- value={inputValue}
54
- onChange={handleInputChange}
55
- />
56
- )
57
- );
58
- };
59
- // Button --------------------------------------------------
60
- const { add, clear, remove } = props.btn;
61
-
62
- const { sharedData, setSharedData } = useAppContext();
63
- const { addfrom } = add;
64
- const val_shared = sharedData[addfrom];
65
-
66
- const handleAddItem = () => {
67
- if (!input && !add.addfrom) {
68
- alert('Please enable input first');
69
- } else if (addfrom && val_shared) {
70
- if (items.includes(val_shared)) {
71
- alert('Item already exist');
72
- } else {
73
- setItems([...items, val_shared]);
74
- setSharedData({ ...sharedData, [id]: [...items, val_shared] });
75
- }
76
- } else if (inputValue.trim() !== '') {
77
- setItems([...items, inputValue]);
78
- setInputValue('');
79
- }
80
- };
81
-
82
- const handleRemoveItem = (itemIndex) => {
83
- setItems(items.filter((_, index) => index !== itemIndex));
84
-
85
- if (addfrom && val_shared) {
86
- setSharedData({
87
- ...sharedData,
88
- [id]: items.filter((_, index) => index !== itemIndex),
89
- });
90
- }
91
- };
92
-
93
- const handleClearItems = () => {
94
- setItems([]);
95
-
96
- if (addfrom && val_shared) {
97
- setSharedData({ ...sharedData, [id]: [] });
98
- }
99
-
100
- if (clear.msg) {
101
- alert(clear.msg === true ? 'All items cleared' : clear.msg);
102
- }
103
- };
104
-
105
- const renderAddbtn = () => {
106
- return (
107
- add &&
108
- add.show && (
109
- <Button
110
- style={add.style}
111
- variant='outline-secondary'
112
- onClick={handleAddItem}>
113
- {add.text}
114
- </Button>
115
- )
116
- );
117
- };
118
-
119
- const renderClearbtn = () => {
120
- return (
121
- clear &&
122
- clear.show && (
123
- <Button
124
- style={clear.style}
125
- variant='outline-secondary'
126
- onClick={handleClearItems}>
127
- {clear.text}
128
- </Button>
129
- )
130
- );
131
- };
132
-
133
- const renderRemovebtn = (index) => {
134
- return (
135
- remove &&
136
- remove.show && (
137
- <Button
138
- variant='outline-danger'
139
- size='sm'
140
- style={{ ...remove.style, float: 'right' }}
141
- onClick={() => handleRemoveItem(index)}>
142
- {remove.text ?? 'X'}
143
- </Button>
144
- )
145
- );
146
- };
147
-
148
- const { liststyle = { maxHeight: '380px', overflow: 'auto' } } = props;
149
-
150
- return (
151
- <div
152
- key={id}
153
- style={style}
154
- className={className}>
155
- {renderTitle()}
156
- {renderSubtitle()}
157
- {renderSearch()}
158
- <InputGroup
159
- className='mb-3'
160
- style={{ justifyContent: 'center' }}>
161
- {renderInput()}
162
- {renderAddbtn()}
163
- {renderClearbtn()}
164
- </InputGroup>
165
-
166
- <ListGroup style={liststyle}>
167
- {items.map((item, index) => (
168
- <ListGroup.Item key={index}>
169
- {item}
170
- {renderRemovebtn(index)}
171
- </ListGroup.Item>
172
- ))}
173
- </ListGroup>
174
- </div>
175
- );
176
- };
177
-
178
- export default List;
1
+ import React, { useState } from 'react';
2
+ import { Button, InputGroup, FormControl, ListGroup } from 'react-bootstrap';
3
+ import { useAppContext } from '../appContext';
4
+ import SearchBar from './searchbar';
5
+
6
+ const List = ({ props, style }) => {
7
+ const { debug } = props;
8
+
9
+ const { style: _style_parsed = {} } = props;
10
+ const { class: className, ...customStyle } = _style_parsed;
11
+
12
+ // if debug is true, then border is red, else no border
13
+ style = {
14
+ ...style,
15
+ border: debug ? '1px solid red' : 'none',
16
+ margin: '0px auto',
17
+ width: '200px',
18
+ ...customStyle,
19
+ };
20
+
21
+ // Title & Subtitle--------------------------------------------------
22
+ const { id = 'genelist', title, subtitle } = props;
23
+ // Render title
24
+ const renderTitle = () => {
25
+ return title && <h3>{title}</h3>;
26
+ };
27
+
28
+ const renderSubtitle = () => {
29
+ return subtitle && <h5>{subtitle}</h5>;
30
+ };
31
+ // Search | Typing --------------------------------------------------
32
+ const { search } = props;
33
+ const renderSearch = () => {
34
+ return search && <SearchBar props={search} />;
35
+ };
36
+ // Input --------------------------------------------------
37
+ const { input } = props;
38
+
39
+ const [items, setItems] = useState([]);
40
+ const [inputValue, setInputValue] = useState('');
41
+
42
+ const handleInputChange = (event) => {
43
+ setInputValue(event.target.value);
44
+ };
45
+
46
+ const renderInput = () => {
47
+ return (
48
+ input && (
49
+ <FormControl
50
+ placeholder={input.placeholder}
51
+ aria-label={input.ariaLabel}
52
+ aria-describedby='basic-addon2'
53
+ value={inputValue}
54
+ onChange={handleInputChange}
55
+ />
56
+ )
57
+ );
58
+ };
59
+ // Button --------------------------------------------------
60
+ const { add, clear, remove } = props.btn;
61
+
62
+ const { sharedData, setSharedData } = useAppContext();
63
+ const { addfrom } = add;
64
+ const val_shared = sharedData[addfrom];
65
+
66
+ const handleAddItem = () => {
67
+ if (!input && !add.addfrom) {
68
+ alert('Please enable input first');
69
+ } else if (addfrom && val_shared) {
70
+ if (items.includes(val_shared)) {
71
+ alert('Item already exist');
72
+ } else {
73
+ setItems([...items, val_shared]);
74
+ setSharedData({ ...sharedData, [id]: [...items, val_shared] });
75
+ }
76
+ } else if (inputValue.trim() !== '') {
77
+ setItems([...items, inputValue]);
78
+ setInputValue('');
79
+ }
80
+ };
81
+
82
+ const handleRemoveItem = (itemIndex) => {
83
+ setItems(items.filter((_, index) => index !== itemIndex));
84
+
85
+ if (addfrom && val_shared) {
86
+ setSharedData({
87
+ ...sharedData,
88
+ [id]: items.filter((_, index) => index !== itemIndex),
89
+ });
90
+ }
91
+ };
92
+
93
+ const handleClearItems = () => {
94
+ setItems([]);
95
+
96
+ if (addfrom && val_shared) {
97
+ setSharedData({ ...sharedData, [id]: [] });
98
+ }
99
+
100
+ if (clear.msg) {
101
+ alert(clear.msg === true ? 'All items cleared' : clear.msg);
102
+ }
103
+ };
104
+
105
+ const renderAddbtn = () => {
106
+ return (
107
+ add &&
108
+ add.show && (
109
+ <Button
110
+ style={add.style}
111
+ variant='outline-secondary'
112
+ onClick={handleAddItem}>
113
+ {add.text}
114
+ </Button>
115
+ )
116
+ );
117
+ };
118
+
119
+ const renderClearbtn = () => {
120
+ return (
121
+ clear &&
122
+ clear.show && (
123
+ <Button
124
+ style={clear.style}
125
+ variant='outline-secondary'
126
+ onClick={handleClearItems}>
127
+ {clear.text}
128
+ </Button>
129
+ )
130
+ );
131
+ };
132
+
133
+ const renderRemovebtn = (index) => {
134
+ return (
135
+ remove &&
136
+ remove.show && (
137
+ <Button
138
+ variant='outline-danger'
139
+ size='sm'
140
+ style={{ ...remove.style, float: 'right' }}
141
+ onClick={() => handleRemoveItem(index)}>
142
+ {remove.text ?? 'X'}
143
+ </Button>
144
+ )
145
+ );
146
+ };
147
+
148
+ const { liststyle = { maxHeight: '380px', overflow: 'auto' } } = props;
149
+
150
+ return (
151
+ <div
152
+ key={id}
153
+ style={style}
154
+ className={className}>
155
+ {renderTitle()}
156
+ {renderSubtitle()}
157
+ {renderSearch()}
158
+ <InputGroup
159
+ className='mb-3'
160
+ style={{ justifyContent: 'center' }}>
161
+ {renderInput()}
162
+ {renderAddbtn()}
163
+ {renderClearbtn()}
164
+ </InputGroup>
165
+
166
+ <ListGroup style={liststyle}>
167
+ {items.map((item, index) => (
168
+ <ListGroup.Item key={index}>
169
+ {item}
170
+ {renderRemovebtn(index)}
171
+ </ListGroup.Item>
172
+ ))}
173
+ </ListGroup>
174
+ </div>
175
+ );
176
+ };
177
+
178
+ export default List;