synapse-react-client 2.1.21 → 3.0.0

package/dist/umd.index.d.ts

@@ -48,7 +48,7 @@ declare const SynapseComponents: {
     FavoritesPage: typeof FavoritesPage;
     EntityModal: import("react").FC<import("./containers/entity/metadata/EntityModal").EntityModalProps>;
     SynapseToastContainer: import("react").FunctionComponent<{}>;
-    displayToast: (message: string, variant?: "success" | "info" | "danger" | "warning" | undefined, toastMessageOptions?: {
+    displayToast: (message: string, variant?: "success" | "danger" | "warning" | "info" | undefined, toastMessageOptions?: {
         title?: string | undefined;
         autoCloseInMs?: number | undefined;
         primaryButtonConfig?: import("./containers/FullWidthAlert").AlertButtonConfig | undefined;
@@ -71,5 +71,6 @@ declare const SynapseComponents: {
         placeholderText?: string | undefined;
     }>;
     QueryWrapperPlotNav: import("react").FunctionComponent<import("./containers/query_wrapper_plot_nav/QueryWrapperPlotNav").QueryWrapperPlotNavProps>;
+    ChangePassword: import("react").FunctionComponent<{}>;
 };
 export { SynapseComponents, SynapseConstants, SynapseClient, SynapseContext };

package/dist/umd.index.js

@@ -42,6 +42,7 @@ var ToastMessage_1 = require("./containers/ToastMessage");
 var ProgrammaticInstructionsModal_1 = require("./containers/ProgrammaticInstructionsModal");
 var PlotlyWrapper_1 = (0, tslib_1.__importDefault)(require("./containers/PlotlyWrapper"));
 var IconSvg_1 = (0, tslib_1.__importDefault)(require("./containers/IconSvg"));
+var ChangePassword_1 = (0, tslib_1.__importDefault)(require("./containers/ChangePassword"));
 var SynapseContext_1 = require("./utils/SynapseContext");
 var DatasetItemsEditor_1 = require("./containers/table/datasets/DatasetItemsEditor");
 var EntityIcon_1 = require("./containers/EntityIcon");
@@ -92,6 +93,7 @@ var SynapseComponents = {
     ProgrammaticInstructionsModal: ProgrammaticInstructionsModal_1.ProgrammaticInstructionsModal,
     SkeletonButton: SkeletonButton_1.SkeletonButton,
     QueryWrapperPlotNav: QueryWrapperPlotNav_1.default,
+    ChangePassword: ChangePassword_1.default,
 };
 exports.SynapseComponents = SynapseComponents;
 //# sourceMappingURL=umd.index.js.map

package/dist/umd.index.js.map

@@ -1 +1 @@
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package/dist/utils/APIConstants.d.ts

@@ -36,5 +36,6 @@ export declare const ALIAS_AVAILABLE: string;
 export declare const REGISTER_ACCOUNT_STEP_1: (portalEndpoint: string) => string;
 export declare const REGISTER_ACCOUNT_STEP_2: string;
 export declare const SIGN_TERMS_OF_USE: string;
+export declare const VERIFICATION_SUBMISSION: string;
 export declare const ACCESS_REQUIREMENT_BY_ID: (id: string | number) => string;
 export declare const FAVORITES: string;

package/dist/utils/APIConstants.js

@@ -3,7 +3,7 @@
  * Separating API endpoints into their own constants file
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.FAVORITES = exports.ACCESS_REQUIREMENT_BY_ID = exports.SIGN_TERMS_OF_USE = exports.REGISTER_ACCOUNT_STEP_2 = exports.REGISTER_ACCOUNT_STEP_1 = exports.ALIAS_AVAILABLE = exports.NOTIFICATION_EMAIL = exports.USER_PROFILE_ID = exports.USER_PROFILE = exports.USER_ID_BUNDLE = exports.USER_ID = exports.USER_BUNDLE = exports.USER = exports.SCHEMA_VALIDATION_GET = exports.SCHEMA_VALIDATION_START = exports.REGISTERED_SCHEMA_ID = exports.REGISTERED_SCHEMA = exports.SCHEMA = exports.USER_PROFILE_ENDPOINT = exports.ENTITY_SCHEMA_VALIDATION = exports.ENTITY_SCHEMA_BINDING = exports.ENTITY_SCHEMA = exports.ENTITY_JSON = exports.ENTITY_HEADERS = exports.ENTITY_ACCESS = exports.ENTITY_BUNDLE_V2 = exports.ENTITY_ID_VERSIONS = exports.ENTITY_ID_VERSION = exports.ENTITY_ID = exports.ENTITY = exports.FILE = exports.AUTH = exports.REPO = exports.BACKEND_ENDPOINT = void 0;
+exports.FAVORITES = exports.ACCESS_REQUIREMENT_BY_ID = exports.VERIFICATION_SUBMISSION = exports.SIGN_TERMS_OF_USE = exports.REGISTER_ACCOUNT_STEP_2 = exports.REGISTER_ACCOUNT_STEP_1 = exports.ALIAS_AVAILABLE = exports.NOTIFICATION_EMAIL = exports.USER_PROFILE_ID = exports.USER_PROFILE = exports.USER_ID_BUNDLE = exports.USER_ID = exports.USER_BUNDLE = exports.USER = exports.SCHEMA_VALIDATION_GET = exports.SCHEMA_VALIDATION_START = exports.REGISTERED_SCHEMA_ID = exports.REGISTERED_SCHEMA = exports.SCHEMA = exports.USER_PROFILE_ENDPOINT = exports.ENTITY_SCHEMA_VALIDATION = exports.ENTITY_SCHEMA_BINDING = exports.ENTITY_SCHEMA = exports.ENTITY_JSON = exports.ENTITY_HEADERS = exports.ENTITY_ACCESS = exports.ENTITY_BUNDLE_V2 = exports.ENTITY_ID_VERSIONS = exports.ENTITY_ID_VERSION = exports.ENTITY_ID = exports.ENTITY = exports.FILE = exports.AUTH = exports.REPO = exports.BACKEND_ENDPOINT = void 0;
 var getEndpoint_1 = require("./functions/getEndpoint");
 exports.BACKEND_ENDPOINT = "" + (0, getEndpoint_1.getEndpoint)(getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT);
 exports.REPO = "/repo/v1";
@@ -20,7 +20,7 @@ exports.ENTITY_ID = ENTITY_ID;
 var ENTITY_ID_VERSION = function (id, version) { return exports.REPO + "/entity/" + id + (version ? "/version/" + version : ''); };
 exports.ENTITY_ID_VERSION = ENTITY_ID_VERSION;
 var ENTITY_ID_VERSIONS = function (id) {
-    return exports.REPO + "/entity/" + id + "/version/";
+    return exports.REPO + "/entity/" + id + "/version";
 };
 exports.ENTITY_ID_VERSIONS = ENTITY_ID_VERSIONS;
 var ENTITY_BUNDLE_V2 = function (id, version) { return (0, exports.ENTITY_ID_VERSION)(id, version) + "/bundle2"; };
@@ -73,6 +73,7 @@ var REGISTER_ACCOUNT_STEP_1 = function (portalEndpoint) {
 exports.REGISTER_ACCOUNT_STEP_1 = REGISTER_ACCOUNT_STEP_1;
 exports.REGISTER_ACCOUNT_STEP_2 = exports.REPO + "/account2";
 exports.SIGN_TERMS_OF_USE = exports.AUTH + "/termsOfUse2";
+exports.VERIFICATION_SUBMISSION = exports.REPO + "/verificationSubmission";
 var ACCESS_REQUIREMENT_BY_ID = function (id) {
     return exports.REPO + "/accessRequirement/" + id;
 };

package/dist/utils/APIConstants.js.map

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package/dist/utils/SynapseClient.d.ts

@@ -1,6 +1,6 @@
 import { JSONSchema7 } from 'json-schema';
 import { BackendDestinationEnum } from './functions/getEndpoint';
-import { AccessApproval, AccessCodeResponse, AccessControlList, AccessRequirement, AccessRequirementStatus, ACTSubmissionStatus, AddFilesToDownloadListRequest, AddFilesToDownloadListResponse, BatchFileRequest, BatchFileResult, BulkFileDownloadRequest, BulkFileDownloadResponse, DownloadFromTableRequest, DownloadFromTableResult, DownloadList, DownloadOrder, Entity, EntityBundle, EntityBundleRequest, EntityHeader, EntityId, EntityJson, EntityLookupRequest, EntityPath, Evaluation, EvaluationRound, FileEntity, FileHandle, FileHandleAssociateType, FileHandleAssociation, FileHandleResults, FileResult, FileUploadComplete, FormData, FormGroup, ListRequest, ListResponse, LoginResponse, MultipartUploadRequest, MultipartUploadStatus, NotificationEmail, OAuthClientPublic, OAuthConsentGrantedResponse, ObjectType, OIDCAuthorizationRequest, OIDCAuthorizationRequestDescription, PaginatedResults, ProjectFilesStatisticsRequest, ProjectFilesStatisticsResponse, ProjectHeaderList, QueryBundleRequest, QueryResultBundle, QueryTableResults, ReferenceList, RestrictionInformationRequest, RestrictionInformationResponse, Submission, SynapseVersion, UserBundle, UserGroupHeaderResponsePage, UserProfile, WikiPage, WikiPageKey } from './synapseTypes/';
+import { AccessApproval, AccessCodeResponse, AccessControlList, AccessRequirement, AccessRequirementStatus, ACTSubmissionStatus, AsynchronousJobStatus, BatchFileRequest, BatchFileResult, BulkFileDownloadRequest, BulkFileDownloadResponse, DownloadFromTableRequest, DownloadFromTableResult, DownloadList, DownloadOrder, Entity, EntityBundle, EntityBundleRequest, EntityHeader, EntityId, EntityJson, EntityLookupRequest, EntityPath, Evaluation, EvaluationRound, FileEntity, FileHandle, FileHandleAssociateType, FileHandleAssociation, FileHandleResults, FileResult, FileUploadComplete, FormData, FormGroup, ListRequest, ListResponse, LoginResponse, MultipartUploadRequest, MultipartUploadStatus, NotificationEmail, OAuthClientPublic, OAuthConsentGrantedResponse, ObjectType, OIDCAuthorizationRequest, OIDCAuthorizationRequestDescription, PaginatedResults, ProjectFilesStatisticsRequest, ProjectFilesStatisticsResponse, ProjectHeaderList, QueryBundleRequest, QueryResultBundle, QueryTableResults, ReferenceList, RestrictionInformationRequest, RestrictionInformationResponse, Submission, SynapseVersion, UserBundle, UserGroupHeaderResponsePage, UserProfile, VerificationSubmission, WikiPage, WikiPageKey } from './synapseTypes/';
 import { ACCESS_TYPE, CreateSubmissionRequest, ManagedACTAccessRequirementStatus, RequestInterface } from './synapseTypes/AccessRequirement';
 import { RenewalInterface } from './synapseTypes/AccessRequirement/RenewalInterface';
 import { AccessTokenGenerationRequest } from './synapseTypes/AccessToken/AccessTokenGenerationRequest';
@@ -8,11 +8,11 @@ import { AccessTokenGenerationResponse } from './synapseTypes/AccessToken/Access
 import { AccessTokenRecordList } from './synapseTypes/AccessToken/AccessTokenRecord';
 import { AuthenticatedOn } from './synapseTypes/AuthenticatedOn';
 import { ChallengePagedResults } from './synapseTypes/ChallengePagedResults';
+import { ChangePasswordWithCurrentPassword } from './synapseTypes/ChangePasswordRequests';
 import { AddBatchOfFilesToDownloadListResponse } from './synapseTypes/DownloadListV2/AddBatchOfFilesToDownloadListResponse';
 import { AddToDownloadListRequest } from './synapseTypes/DownloadListV2/AddToDownloadListRequest';
 import { AddToDownloadListResponse } from './synapseTypes/DownloadListV2/AddToDownloadListResponse';
 import { DownloadListItem } from './synapseTypes/DownloadListV2/DownloadListItem';
-import { DownloadListManifestResponse } from './synapseTypes/DownloadListV2/DownloadListManifestResponse';
 import { DownloadListPackageResponse } from './synapseTypes/DownloadListV2/DownloadListPackageResponse';
 import { ActionRequiredRequest, AvailableFilesRequest } from './synapseTypes/DownloadListV2/QueryRequestDetails';
 import { ActionRequiredResponse, AvailableFilesResponse, FilesStatisticsResponse } from './synapseTypes/DownloadListV2/QueryResponseDetails';
@@ -44,23 +44,30 @@ export declare const getRootURL: () => string;
  * @returns after t milliseconds
  */
 export declare function delay(t: number): Promise<unknown>;
-export declare type SynapseClientError = {
+/**
+ * Error message returned by the Synapse Backend
+ */
+export declare type SynapseError = {
     reason: string;
-    status: number;
 };
-export declare const doPost: <T>(url: string, requestJsonObject: any, accessToken: string | undefined, initCredentials: RequestInit['credentials'], endpoint: BackendDestinationEnum) => Promise<T>;
+/**
+ * Error message returned by the Synapse backend joined with the
+ * HTTP status code.
+ */
+export declare class SynapseClientError extends Error {
+    status: number;
+    reason: string;
+    constructor(status: number, reason: string);
+}
+export declare const doPost: <T>(url: string, requestJsonObject: unknown, accessToken: string | undefined, initCredentials: RequestInit['credentials'], endpoint: BackendDestinationEnum, signal?: AbortSignal | undefined) => Promise<T>;
 export declare const doGet: <T>(url: string, accessToken: string | undefined, initCredentials: RequestInit['credentials'], endpoint: BackendDestinationEnum) => Promise<T>;
 export declare const doDelete: (url: string, accessToken: string | undefined, initCredentials: RequestInit['credentials'], endpoint: BackendDestinationEnum) => Promise<void>;
 export declare const doPut: <T>(url: string, requestJsonObject: any, accessToken: string | undefined, initCredentials: RequestInit['credentials'], endpoint: BackendDestinationEnum) => Promise<T>;
 export declare const getVersion: () => Promise<SynapseVersion>;
-/**
- * https://rest-docs.synapse.org/rest/POST/download/list/add/async/start.html
- */
-export declare const addFilesToDownloadList: (request: AddFilesToDownloadListRequest, accessToken: string, updateParentState?: any) => Promise<AddFilesToDownloadListResponse>;
 /**
  * https://rest-docs.synapse.org/rest/POST/entity/id/table/download/csv/async/start.html
  */
-export declare const getDownloadFromTableRequest: (request: DownloadFromTableRequest, accessToken?: string | undefined, updateParentState?: any) => Promise<DownloadFromTableResult>;
+export declare const getDownloadFromTableRequest: (request: DownloadFromTableRequest, accessToken?: string | undefined) => Promise<DownloadFromTableResult>;
 /**
  * https://rest-docs.synapse.org/rest/GET/fileHandle/handleId.html
  * Get a FileHandle using its ID.
@@ -80,14 +87,36 @@ export declare const getActualFileHandleByIdURL: (handleId: string, accessToken:
  * @return a short lived presignedURL to be redirected with
  **/
 export declare const getFileHandleByIdURL: (handleId: string, accessToken?: string | undefined) => Promise<string>;
-export declare const getAsyncResultFromJobId: <T>(urlRequest: string, accessToken?: string | undefined, updateParentState?: any) => Promise<T>;
+/**
+ * Get a completed asynchronous job. Will refetch every 500ms until COMPLETE or FAILED.
+ * @param asyncJobId
+ * @param accessToken
+ * @param setCurrentAsyncResult - optional function that will receive the AsynchronousJobStatus object every time
+ *   it's fetched, including while it is in the "PROCESSING" state.
+ * @returns
+ */
+export declare const getAsyncResultFromJobId: <TRequest, TResponse>(asyncJobId: string, responseBodyEndpoint: string, accessToken?: string | undefined, setCurrentAsyncResult?: ((result: AsynchronousJobStatus<TRequest, TResponse>) => void) | undefined) => Promise<AsynchronousJobStatus<TRequest, TResponse>>;
+/**
+ * Get the response body for an asynchronous job, or throw an error if the job failed.
+ * @param asyncJobId
+ * @param accessToken
+ * @returns
+ */
+export declare const getAsyncResultBodyFromJobId: <TResponse>(asyncJobId: string, responseBodyEndpoint: string, accessToken?: string | undefined) => Promise<TResponse>;
+/**
+ * https://rest-docs.synapse.org/rest/POST/entity/id/table/query/nextPage/async/start.html
+ * @param {*} queryBundleRequest
+ * @param {*} accessToken
+ * @param {*} endpoint
+ */
+export declare const getQueryTableAsyncJobResults: (queryBundleRequest: QueryBundleRequest, accessToken?: string | undefined) => Promise<AsynchronousJobStatus<QueryBundleRequest, QueryResultBundle>>;
 /**
  * https://rest-docs.synapse.org/rest/POST/entity/id/table/query/nextPage/async/start.html
  * @param {*} queryBundleRequest
  * @param {*} accessToken
  * @param {*} endpoint
  */
-export declare const getQueryTableResults: (queryBundleRequest: QueryBundleRequest, accessToken?: string | undefined, updateParentState?: any) => Promise<QueryResultBundle>;
+export declare const getQueryTableResults: (queryBundleRequest: QueryBundleRequest, accessToken?: string | undefined) => Promise<QueryResultBundle>;
 /**
  *  Run and return results from queryBundleRequest, queryBundle request must be of the
  *  form:
@@ -153,6 +182,18 @@ export declare const getUserProfileById: (accessToken: string | undefined, owner
  * https://rest-docs.synapse.org/rest/org/sagebionetworks/repo/model/UserBundle.html
  */
 export declare const getUserBundle: (id: string, mask: number, accessToken: string | undefined) => Promise<UserBundle>;
+/**
+ * Return the ucurrent user's bundle
+ * http://rest-docs.synapse.org/rest/GET/user/bundle.html
+ */
+export declare const getMyUserBundle: (mask: number, accessToken: string | undefined) => Promise<UserBundle>;
+/**
+ * Update your own profile
+ * @param profile
+ * @param accessToken
+ * @returns
+ */
+export declare const updateMyUserProfile: (profile: UserProfile, accessToken?: string | undefined) => Promise<UserProfile>;
 /**
  * Get Users and Groups that match the given prefix.
  * http://rest-docs.synapse.org/rest/GET/userGroupHeaders.html
@@ -175,7 +216,7 @@ export declare const getUserProfiles: (list: string[], accessToken?: string | un
  * Return the children (Files/Folders) of the given entity (Project or Folder).
  * https://rest-docs.synapse.org/rest/POST/entity/children.html
  */
-export declare const getEntityChildren: (request: EntityChildrenRequest, accessToken?: string | undefined) => Promise<EntityChildrenResponse>;
+export declare const getEntityChildren: (request: EntityChildrenRequest, accessToken?: string | undefined, signal?: AbortSignal | undefined) => Promise<EntityChildrenResponse>;
 /**
  * Retrieve an entityId for a given parent ID and entity name.
  * https://rest-docs.synapse.org/rest/POST/entity/child.html
@@ -198,8 +239,7 @@ export declare const getBulkFiles: (bulkFileDownloadRequest: BulkFileDownloadReq
  * See SynapseClient.test.js for an example partsMask.
  * https://rest-docs.synapse.org/rest/org/sagebionetworks/repo/model/Entity.html
  */
-declare type GetEntity = <T extends Entity>(accessToken: string | undefined, entityId: string, versionNumber?: string) => Promise<T>;
-export declare const getEntity: GetEntity;
+export declare const getEntity: <T extends Entity>(accessToken: string | undefined, entityId: string, versionNumber?: string | undefined) => Promise<T>;
 /**
  * Get a list of entity headers given by entity ids
  * http://rest-docs.synapse.org/rest/GET/entity/type.html
@@ -319,16 +359,16 @@ export declare const addFileToDownloadListV2: (fileEntityId: string, versionNumb
 /**
  * http://rest-docs.synapse.org/rest/POST/download/list/package/async/start.html
  */
-export declare const createPackageFromDownloadListV2: (zipFileName?: string | undefined, accessToken?: string | undefined, updateParentState?: any) => Promise<DownloadListPackageResponse>;
+export declare const createPackageFromDownloadListV2: (zipFileName?: string | undefined, accessToken?: string | undefined) => Promise<DownloadListPackageResponse>;
 /**
  * http://rest-docs.synapse.org/rest/POST/download/list/package/async/start.html
  */
-export declare const createManifestFromDownloadListV2: (accessToken?: string | undefined, updateParentState?: any) => Promise<DownloadListManifestResponse>;
+export declare const createManifestFromDownloadListV2: (accessToken?: string | undefined) => Promise<unknown>;
 /**
  * http://rest-docs.synapse.org/rest/POST/download/list/add/async/start.html
  * Start an asynchronous job to add files to a user's download list from either a view query or a folder. Use GET /download/list/add/async/get/{asyncToken} to get both the job status and job results.
  */
-export declare const addFilesToDownloadListV2: (request: AddToDownloadListRequest, accessToken?: string | undefined, updateParentState?: any) => Promise<AddToDownloadListResponse>;
+export declare const addFilesToDownloadListV2: (request: AddToDownloadListRequest, accessToken?: string | undefined) => Promise<AddToDownloadListResponse>;
 /**
  * Create an ACL
  * https://rest-docs.synapse.org/rest/POST/entity/id/acl.html
@@ -564,7 +604,7 @@ export declare const deleteDownloadList: (accessToken: string | undefined) => Pr
  * @param {*} endpoint
  * // technically returns a TableUpdateTransactionResponse, but I don't see any reason we need this
  */
-export declare const updateTable: (tableUpdateRequest: TableUpdateTransactionRequest, accessToken?: string | undefined, updateParentState?: any) => Promise<any>;
+export declare const updateTable: (tableUpdateRequest: TableUpdateTransactionRequest, accessToken?: string | undefined) => Promise<any>;
 export declare const getTransformSqlWithFacetsRequest: (transformSqlWithFacetsRequest: TransformSqlWithFacetsRequest) => Promise<SqlTransformResponse>;
 export declare const createPersonalAccessToken: (accessTokenGenerationRequest: AccessTokenGenerationRequest, accessToken: string | undefined) => Promise<AccessTokenGenerationResponse>;
 export declare const getPersonalAccessTokenRecords: (accessToken: string | undefined, nextPageToken: string | undefined) => Promise<AccessTokenRecordList>;
@@ -633,6 +673,7 @@ export declare const getSchema: (schema$id: string) => Promise<JSONSchema7>;
  * @returns
  */
 export declare const getValidationSchema: (schema$id: string, accessToken?: string | undefined) => Promise<{
+    concreteType: 'org.sagebionetworks.repo.model.schema.GetValidationSchemaResponse';
     validationSchema: JSONSchema7;
 }>;
 /**
@@ -688,4 +729,5 @@ export declare const oAuthRegisterAccountStep2: (userName: string, provider: str
  */
 export declare const bindOAuthProviderToAccount: (provider: string, authenticationCode: string | number, redirectUrl: string, endpoint?: any) => Promise<LoginResponse>;
 export declare const signSynapseTermsOfUse: (accessToken: string) => Promise<unknown>;
-export {};
+export declare const createProfileVerificationSubmission: (verificationSubmission: VerificationSubmission, accessToken: string) => Promise<unknown>;
+export declare const changePasswordWithCurrentPassword: (newPassword: ChangePasswordWithCurrentPassword, accessToken: string | undefined) => Promise<ChangePasswordWithCurrentPassword>;