scientify 1.11.0 → 1.12.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +2 -2
- package/README.zh.md +2 -2
- package/dist/index.d.ts.map +1 -1
- package/dist/index.js +16 -1
- package/dist/index.js.map +1 -1
- package/dist/src/cli/research.d.ts +10 -0
- package/dist/src/cli/research.d.ts.map +1 -0
- package/dist/src/cli/research.js +283 -0
- package/dist/src/cli/research.js.map +1 -0
- package/dist/src/commands/metabolism-status.d.ts +6 -0
- package/dist/src/commands/metabolism-status.d.ts.map +1 -0
- package/dist/src/commands/metabolism-status.js +100 -0
- package/dist/src/commands/metabolism-status.js.map +1 -0
- package/dist/src/hooks/cron-skill-inject.d.ts +21 -0
- package/dist/src/hooks/cron-skill-inject.d.ts.map +1 -0
- package/dist/src/hooks/cron-skill-inject.js +53 -0
- package/dist/src/hooks/cron-skill-inject.js.map +1 -0
- package/dist/src/templates/bootstrap.d.ts +8 -0
- package/dist/src/templates/bootstrap.d.ts.map +1 -0
- package/dist/src/templates/bootstrap.js +153 -0
- package/dist/src/templates/bootstrap.js.map +1 -0
- package/dist/src/tools/arxiv-download.d.ts +2 -2
- package/dist/src/tools/arxiv-download.d.ts.map +1 -1
- package/dist/src/tools/arxiv-download.js +9 -11
- package/dist/src/tools/arxiv-download.js.map +1 -1
- package/dist/src/tools/unpaywall-download.d.ts +2 -2
- package/dist/src/tools/unpaywall-download.js +4 -4
- package/dist/src/tools/unpaywall-download.js.map +1 -1
- package/openclaw.plugin.json +4 -2
- package/package.json +1 -1
- package/skills/idea-generation/SKILL.md +24 -29
- package/skills/metabolism/SKILL.md +118 -0
- package/skills/metabolism-init/SKILL.md +80 -0
- package/skills/{literature-survey → research-collect}/SKILL.md +23 -33
- package/skills/research-experiment/SKILL.md +1 -1
- package/skills/research-implement/SKILL.md +1 -1
- package/skills/research-pipeline/SKILL.md +6 -11
- package/skills/research-plan/SKILL.md +3 -3
- package/skills/research-review/SKILL.md +1 -1
- package/skills/research-survey/SKILL.md +6 -6
- package/skills/write-review-paper/SKILL.md +14 -14
- package/skills/_shared/workspace-spec.md +0 -164
- package/skills/install-scientify/SKILL.md +0 -106
|
@@ -0,0 +1,153 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* Templates for research project agent workspace files.
|
|
3
|
+
* Generated by `openclaw research init <id>` CLI command.
|
|
4
|
+
*/
|
|
5
|
+
export function renderBootstrapMd(projectName) {
|
|
6
|
+
return `# Research Agent Bootstrap
|
|
7
|
+
|
|
8
|
+
你刚刚被创建为课题「${projectName}」的研究 agent。你需要完成首次配置。
|
|
9
|
+
|
|
10
|
+
## 引导流程
|
|
11
|
+
|
|
12
|
+
1. 向用户问好，说明你是课题「${projectName}」的研究 agent，请用户描述研究方向
|
|
13
|
+
2. 根据用户回答，提取：
|
|
14
|
+
- 核心域关键词（3-5 个）
|
|
15
|
+
- 建议的 arXiv 分类（如 cs.LG, cs.AI）
|
|
16
|
+
- 建议的监测带相邻领域分类
|
|
17
|
+
3. 向用户确认以上配置，接受调整
|
|
18
|
+
4. 确认后执行以下写入操作：
|
|
19
|
+
- 更新 SOUL.md：填写研究方向、核心域、监测带各字段
|
|
20
|
+
- 生成 metabolism/config.json（参考下方模板）
|
|
21
|
+
5. 询问用户是否立即执行 Day 0（构建初始知识状态 K(T0)）
|
|
22
|
+
- 如果是，使用 arxiv_search 按配置的关键词检索论文，执行 skills/metabolism/SKILL.md 中的四步循环
|
|
23
|
+
6. 删除本文件（BOOTSTRAP.md）
|
|
24
|
+
|
|
25
|
+
## config.json 模板
|
|
26
|
+
|
|
27
|
+
\`\`\`json
|
|
28
|
+
{
|
|
29
|
+
"projectId": "${projectName}",
|
|
30
|
+
"coreQuery": {
|
|
31
|
+
"keywords": ["关键词1", "关键词2"],
|
|
32
|
+
"arxivCategories": ["cs.LG"],
|
|
33
|
+
"dateMode": "daily-new"
|
|
34
|
+
},
|
|
35
|
+
"monitorZone": {
|
|
36
|
+
"categories": ["相邻领域分类"],
|
|
37
|
+
"enabled": true
|
|
38
|
+
},
|
|
39
|
+
"heartbeat": {
|
|
40
|
+
"cronExpression": "0 6 * * *",
|
|
41
|
+
"timezone": "Asia/Shanghai",
|
|
42
|
+
"enabled": true
|
|
43
|
+
},
|
|
44
|
+
"agentId": "research-${projectName}",
|
|
45
|
+
"currentDay": 0,
|
|
46
|
+
"createdAt": "${new Date().toISOString()}"
|
|
47
|
+
}
|
|
48
|
+
\`\`\`
|
|
49
|
+
`;
|
|
50
|
+
}
|
|
51
|
+
export function renderSoulMd(projectName) {
|
|
52
|
+
return `# Project Agent — ${projectName}
|
|
53
|
+
|
|
54
|
+
你是课题「${projectName}」的研究 agent。
|
|
55
|
+
|
|
56
|
+
## 研究方向
|
|
57
|
+
{由 BOOTSTRAP 流程填写}
|
|
58
|
+
|
|
59
|
+
## 核心域
|
|
60
|
+
关键词: {由 BOOTSTRAP 流程填写}
|
|
61
|
+
arXiv 分类: {由 BOOTSTRAP 流程填写}
|
|
62
|
+
|
|
63
|
+
## 监测带
|
|
64
|
+
相邻领域: {由 BOOTSTRAP 流程填写}
|
|
65
|
+
`;
|
|
66
|
+
}
|
|
67
|
+
export function renderAgentsMd() {
|
|
68
|
+
return `# Agent Operating Manual
|
|
69
|
+
|
|
70
|
+
## Workspace Layout
|
|
71
|
+
|
|
72
|
+
本 agent 的工作目录即为项目根目录（\`$W\`）。所有文件相对于 \`$W\` 组织：
|
|
73
|
+
|
|
74
|
+
\`\`\`
|
|
75
|
+
$W/
|
|
76
|
+
├── SOUL.md # 身份 + 研究方向
|
|
77
|
+
├── AGENTS.md # 本文档
|
|
78
|
+
├── metabolism/ # 知识新陈代谢
|
|
79
|
+
│ ├── config.json # 项目配置（关键词、分类、heartbeat）
|
|
80
|
+
│ ├── knowledge/ # K(t) 持久知识状态
|
|
81
|
+
│ │ ├── _index.md # 全景索引
|
|
82
|
+
│ │ └── topic-*.md # 主题文件（上限 50）
|
|
83
|
+
│ ├── diffs/ # 每日 diff 报告
|
|
84
|
+
│ ├── hypotheses/ # 生成的假设
|
|
85
|
+
│ └── log/ # 运行日志
|
|
86
|
+
├── survey/ # /research-collect outputs
|
|
87
|
+
│ ├── search_terms.json
|
|
88
|
+
│ └── report.md
|
|
89
|
+
├── papers/ # 下载的论文
|
|
90
|
+
│ ├── _downloads/ # 原始下载
|
|
91
|
+
│ ├── _meta/ # 元数据 {arxiv_id}.json
|
|
92
|
+
│ └── {direction}/ # 按方向分类
|
|
93
|
+
├── repos/ # 参考代码仓库
|
|
94
|
+
├── notes/ # /research-survey: 逐篇深度笔记
|
|
95
|
+
│ └── paper_{arxiv_id}.md
|
|
96
|
+
├── ideas/ # /idea-generation outputs
|
|
97
|
+
├── review/ # /write-review-paper outputs
|
|
98
|
+
├── survey_res.md # /research-survey: 方法对比报告
|
|
99
|
+
├── plan_res.md # /research-plan: 实现计划
|
|
100
|
+
├── project/ # /research-implement: 代码实现
|
|
101
|
+
├── ml_res.md # /research-implement: 执行报告
|
|
102
|
+
├── iterations/ # /research-review: 审查迭代
|
|
103
|
+
│ └── judge_v*.md
|
|
104
|
+
├── experiment_res.md # /research-experiment: 实验报告
|
|
105
|
+
└── skills/ # workspace skills (metabolism 等)
|
|
106
|
+
\`\`\`
|
|
107
|
+
|
|
108
|
+
## Session Context
|
|
109
|
+
|
|
110
|
+
你可能在不同类型的 session 中被唤醒：
|
|
111
|
+
- **Main session**：与人类直接对话，可触发 research-pipeline 等编排 skill
|
|
112
|
+
- **Cron session**：定时触发，执行周期性任务（如每日 metabolism）
|
|
113
|
+
- **Spawn session**：被 main session 调度（sessions_spawn），执行一次性重任务
|
|
114
|
+
|
|
115
|
+
任务指令会在 session 启动时注入，按指令执行即可。
|
|
116
|
+
|
|
117
|
+
## Conventions
|
|
118
|
+
|
|
119
|
+
### File Existence = Step Completion
|
|
120
|
+
检查产出文件是否存在再执行。已存在则跳过。支持崩溃恢复和增量推进。
|
|
121
|
+
|
|
122
|
+
### Immutability
|
|
123
|
+
产出文件一旦写入不修改，除非用户明确要求。例外：\`project/\` 在 implement-review 迭代中可变。
|
|
124
|
+
|
|
125
|
+
### Knowledge File Rules
|
|
126
|
+
- knowledge/ 下的文件是持久知识状态，修改需谨慎
|
|
127
|
+
- 每次修改必须先读取当前内容再更新
|
|
128
|
+
- _index.md 是全景索引，必须与 topic 文件保持同步
|
|
129
|
+
- topic 文件数上限 50，低活跃主题应合并归档
|
|
130
|
+
|
|
131
|
+
## Research Rigor
|
|
132
|
+
|
|
133
|
+
- 先读原文，再思考，最后作答
|
|
134
|
+
- 不捏造引用或实验结果，每个断言需有来源
|
|
135
|
+
- 不确定时说「不确定」而非猜测
|
|
136
|
+
- 读论文全文（.tex），不能只读 abstract
|
|
137
|
+
- 想法必须扎根于真实论文
|
|
138
|
+
|
|
139
|
+
## Skill Outputs Summary
|
|
140
|
+
|
|
141
|
+
| Skill | Primary Outputs |
|
|
142
|
+
|-------|-----------------|
|
|
143
|
+
| /research-collect | survey/, papers/ |
|
|
144
|
+
| /research-survey | notes/paper_*.md, survey_res.md |
|
|
145
|
+
| /research-plan | plan_res.md |
|
|
146
|
+
| /research-implement | project/, ml_res.md |
|
|
147
|
+
| /research-review | iterations/judge_v*.md |
|
|
148
|
+
| /research-experiment | experiment_res.md |
|
|
149
|
+
| /idea-generation | ideas/ |
|
|
150
|
+
| /write-review-paper | review/ |
|
|
151
|
+
`;
|
|
152
|
+
}
|
|
153
|
+
//# sourceMappingURL=bootstrap.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"bootstrap.js","sourceRoot":"","sources":["../../../src/templates/bootstrap.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,MAAM,UAAU,iBAAiB,CAAC,WAAmB;IACnD,OAAO;;YAEG,WAAW;;;;kBAIL,WAAW;;;;;;;;;;;;;;;;;kBAiBX,WAAW;;;;;;;;;;;;;;;yBAeJ,WAAW;;kBAElB,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;;;CAGzC,CAAC;AACF,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,WAAmB;IAC9C,OAAO,qBAAqB,WAAW;;OAElC,WAAW;;;;;;;;;;;CAWjB,CAAC;AACF,CAAC;AAED,MAAM,UAAU,cAAc;IAC5B,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAmFR,CAAC;AACF,CAAC"}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
export declare const ArxivDownloadSchema: import("@sinclair/typebox").TObject<{
|
|
2
2
|
arxiv_ids: import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>;
|
|
3
|
-
output_dir: import("@sinclair/typebox").TString
|
|
3
|
+
output_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
|
|
4
4
|
}>;
|
|
5
5
|
/**
|
|
6
6
|
* arxiv_download: Download papers by arxiv_id. Requires explicit output_dir.
|
|
@@ -11,7 +11,7 @@ export declare function createArxivDownloadTool(): {
|
|
|
11
11
|
description: string;
|
|
12
12
|
parameters: import("@sinclair/typebox").TObject<{
|
|
13
13
|
arxiv_ids: import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>;
|
|
14
|
-
output_dir: import("@sinclair/typebox").TString
|
|
14
|
+
output_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
|
|
15
15
|
}>;
|
|
16
16
|
execute: (_toolCallId: string, rawArgs: unknown) => Promise<{
|
|
17
17
|
type: "tool_result";
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"arxiv-download.d.ts","sourceRoot":"","sources":["../../../src/tools/arxiv-download.ts"],"names":[],"mappings":"AAYA,eAAO,MAAM,mBAAmB;;;EAO9B,CAAC;AAoIH;;GAEG;AACH,wBAAgB,uBAAuB;;;;;;;;2BAMN,MAAM,WAAW,OAAO;;;;;;;;
|
|
1
|
+
{"version":3,"file":"arxiv-download.d.ts","sourceRoot":"","sources":["../../../src/tools/arxiv-download.ts"],"names":[],"mappings":"AAYA,eAAO,MAAM,mBAAmB;;;EAO9B,CAAC;AAoIH;;GAEG;AACH,wBAAgB,uBAAuB;;;;;;;;2BAMN,MAAM,WAAW,OAAO;;;;;;;;EA0DxD"}
|
|
@@ -11,9 +11,9 @@ export const ArxivDownloadSchema = Type.Object({
|
|
|
11
11
|
arxiv_ids: Type.Array(Type.String(), {
|
|
12
12
|
description: "List of arXiv IDs to download (e.g. ['2401.12345', '2312.00001']).",
|
|
13
13
|
}),
|
|
14
|
-
output_dir: Type.String({
|
|
15
|
-
description: "Directory to save files.
|
|
16
|
-
}),
|
|
14
|
+
output_dir: Type.Optional(Type.String({
|
|
15
|
+
description: "Directory to save files. Defaults to 'papers/' relative to cwd. Can be relative or absolute.",
|
|
16
|
+
})),
|
|
17
17
|
});
|
|
18
18
|
function readStringParam(params, key, opts) {
|
|
19
19
|
const value = params[key];
|
|
@@ -131,19 +131,17 @@ export function createArxivDownloadTool() {
|
|
|
131
131
|
return {
|
|
132
132
|
label: "ArXiv Download",
|
|
133
133
|
name: "arxiv_download",
|
|
134
|
-
description: "Download arXiv papers by ID. Downloads .tex source (with PDF fallback).
|
|
134
|
+
description: "Download arXiv papers by ID. Downloads .tex source (with PDF fallback). output_dir defaults to 'papers/' if omitted.",
|
|
135
135
|
parameters: ArxivDownloadSchema,
|
|
136
136
|
execute: async (_toolCallId, rawArgs) => {
|
|
137
137
|
const params = rawArgs;
|
|
138
138
|
const arxivIds = readArrayParam(params, "arxiv_ids");
|
|
139
|
-
const outputDir = readStringParam(params, "output_dir"
|
|
139
|
+
const outputDir = readStringParam(params, "output_dir") ?? "papers";
|
|
140
140
|
if (arxivIds.length === 0) {
|
|
141
141
|
return Result.err("invalid_params", "arxiv_ids must be a non-empty array");
|
|
142
142
|
}
|
|
143
|
-
|
|
144
|
-
|
|
145
|
-
}
|
|
146
|
-
await fs.promises.mkdir(outputDir, { recursive: true });
|
|
143
|
+
const resolvedOutputDir = path.resolve(outputDir);
|
|
144
|
+
await fs.promises.mkdir(resolvedOutputDir, { recursive: true });
|
|
147
145
|
const logger = { debug: (msg) => console.log(`[arxiv-download] ${msg}`) };
|
|
148
146
|
const downloads = [];
|
|
149
147
|
for (let i = 0; i < arxivIds.length; i++) {
|
|
@@ -153,7 +151,7 @@ export function createArxivDownloadTool() {
|
|
|
153
151
|
await delay(RATE_LIMIT_MS);
|
|
154
152
|
}
|
|
155
153
|
// Always try .tex first, fallback to PDF automatically
|
|
156
|
-
const result = await downloadTexSource(arxivId,
|
|
154
|
+
const result = await downloadTexSource(arxivId, resolvedOutputDir, logger);
|
|
157
155
|
downloads.push({
|
|
158
156
|
arxiv_id: arxivId,
|
|
159
157
|
success: result.success,
|
|
@@ -167,7 +165,7 @@ export function createArxivDownloadTool() {
|
|
|
167
165
|
const successful = downloads.filter((d) => d.success).length;
|
|
168
166
|
const failed = downloads.filter((d) => !d.success).length;
|
|
169
167
|
return Result.ok({
|
|
170
|
-
output_dir:
|
|
168
|
+
output_dir: resolvedOutputDir,
|
|
171
169
|
total: arxivIds.length,
|
|
172
170
|
successful,
|
|
173
171
|
failed,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"arxiv-download.js","sourceRoot":"","sources":["../../../src/tools/arxiv-download.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACzC,OAAO,KAAK,EAAE,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,KAAK,GAAG,MAAM,KAAK,CAAC;AAC3B,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAErC,2DAA2D;AAC3D,MAAM,aAAa,GAAG,IAAI,CAAC;AAE3B,mDAAmD;AACnD,MAAM,KAAK,GAAG,CAAC,EAAU,EAAE,EAAE,CAAC,IAAI,OAAO,CAAO,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC,CAAC;AAEtF,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,CAAC,MAAM,CAAC;IAC7C,SAAS,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE;QACnC,WAAW,EAAE,oEAAoE;KAClF,CAAC;IACF,UAAU,EAAE,IAAI,CAAC,MAAM,CAAC;
|
|
1
|
+
{"version":3,"file":"arxiv-download.js","sourceRoot":"","sources":["../../../src/tools/arxiv-download.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACzC,OAAO,KAAK,EAAE,MAAM,SAAS,CAAC;AAC9B,OAAO,KAAK,IAAI,MAAM,WAAW,CAAC;AAClC,OAAO,KAAK,GAAG,MAAM,KAAK,CAAC;AAC3B,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAErC,2DAA2D;AAC3D,MAAM,aAAa,GAAG,IAAI,CAAC;AAE3B,mDAAmD;AACnD,MAAM,KAAK,GAAG,CAAC,EAAU,EAAE,EAAE,CAAC,IAAI,OAAO,CAAO,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC,CAAC;AAEtF,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI,CAAC,MAAM,CAAC;IAC7C,SAAS,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE;QACnC,WAAW,EAAE,oEAAoE;KAClF,CAAC;IACF,UAAU,EAAE,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC;QACpC,WAAW,EAAE,8FAA8F;KAC5G,CAAC,CAAC;CACJ,CAAC,CAAC;AAWH,SAAS,eAAe,CAAC,MAA+B,EAAE,GAAW,EAAE,IAA6B;IAClG,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC;IAC1B,IAAI,KAAK,KAAK,SAAS,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;QAC1C,IAAI,IAAI,EAAE,QAAQ,EAAE,CAAC;YACnB,MAAM,IAAI,KAAK,CAAC,+BAA+B,GAAG,EAAE,CAAC,CAAC;QACxD,CAAC;QACD,OAAO,SAAS,CAAC;IACnB,CAAC;IACD,OAAO,MAAM,CAAC,KAAK,CAAC,CAAC;AACvB,CAAC;AAED,SAAS,cAAc,CAAC,MAA+B,EAAE,GAAW;IAClE,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC;IAC1B,IAAI,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IACnD,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE,CAAC;QAC9B,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;YACjC,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC;gBAAE,OAAO,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;QACvD,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,CAAC,KAAK,CAAC,CAAC;QACjB,CAAC;IACH,CAAC;IACD,OAAO,EAAE,CAAC;AACZ,CAAC;AAED,KAAK,UAAU,iBAAiB,CAC9B,OAAe,EACf,SAAiB,EACjB,MAA0C;IAE1C,MAAM,GAAG,GAAG,CAAC,GAAW,EAAE,EAAE,CAAC,MAAM,EAAE,KAAK,EAAE,CAAC,UAAU,OAAO,KAAK,GAAG,EAAE,CAAC,CAAC;IAC1E,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC;IAC/C,MAAM,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,QAAQ,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAEvD,MAAM,MAAM,GAAG,yBAAyB,OAAO,EAAE,CAAC;IAClD,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,eAAe,CAAC,CAAC;IAErD,IAAI,CAAC;QACH,GAAG,CAAC,wBAAwB,MAAM,EAAE,CAAC,CAAC;QACtC,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC,CAAC;QACrC,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,MAAM,MAAM,GAAG,gCAAgC,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,EAAE,CAAC;YACxF,GAAG,CAAC,MAAM,CAAC,CAAC;YACZ,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,OAAO,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;YAC7D,OAAO,EAAE,GAAG,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,CAAC;QAC/C,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,QAAQ,CAAC,WAAW,EAAE,CAAC,CAAC;QACzD,GAAG,CAAC,cAAc,MAAM,CAAC,MAAM,QAAQ,CAAC,CAAC;QACzC,MAAM,EAAE,CAAC,QAAQ,CAAC,SAAS,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;QAE7C,MAAM,OAAO,GAAG,MAAM,CAAC,CAAC,CAAC,KAAK,IAAI,IAAI,MAAM,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC;QACzD,GAAG,CAAC,iBAAiB,OAAO,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,aAAa,EAAE,CAAC,CAAC;QAE3D,IAAI,OAAO,EAAE,CAAC;YACZ,MAAM,GAAG,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,EAAE,QAAQ,EAAE,CAAC,CAAC;YAC9C,MAAM,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;YAElC,MAAM,KAAK,GAAG,MAAM,YAAY,CAAC,QAAQ,CAAC,CAAC;YAC3C,GAAG,CAAC,SAAS,KAAK,CAAC,MAAM,gBAAgB,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YAC7D,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBACvB,MAAM,MAAM,GAAG,uCAAuC,CAAC;gBACvD,GAAG,CAAC,MAAM,CAAC,CAAC;gBACZ,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,OAAO,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;gBAC7D,OAAO,EAAE,GAAG,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,CAAC;YAC/C,CAAC;YACD,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,EAAE,CAAC;QACjE,CAAC;aAAM,CAAC;YACN,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;YAChD,MAAM,EAAE,CAAC,QAAQ,CAAC,MAAM,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;YAC3C,GAAG,CAAC,+BAA+B,CAAC,CAAC;YACrC,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,EAAE,CAAC,UAAU,CAAC,EAAE,CAAC;QAC/E,CAAC;IACH,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,MAAM,GAAG,4BAA4B,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,CAAC;QACpG,GAAG,CAAC,MAAM,CAAC,CAAC;QACZ,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,OAAO,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;QAC7D,OAAO,EAAE,GAAG,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,CAAC;IAC/C,CAAC;AACH,CAAC;AAED,KAAK,UAAU,WAAW,CACxB,OAAe,EACf,SAAiB,EACjB,MAA0C;IAE1C,MAAM,GAAG,GAAG,CAAC,GAAW,EAAE,EAAE,CAAC,MAAM,EAAE,KAAK,EAAE,CAAC,UAAU,OAAO,KAAK,GAAG,EAAE,CAAC,CAAC;IAC1E,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,yBAAyB,OAAO,MAAM,CAAC;QACtD,GAAG,CAAC,oBAAoB,MAAM,EAAE,CAAC,CAAC;QAClC,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC,CAAC;QACrC,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,GAAG,CAAC,6BAA6B,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;YACpD,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,wBAAwB,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC;QAClH,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,GAAG,OAAO,MAAM,CAAC,CAAC;QACvD,MAAM,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,QAAQ,CAAC,WAAW,EAAE,CAAC,CAAC;QACzD,MAAM,EAAE,CAAC,QAAQ,CAAC,SAAS,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;QAC7C,GAAG,CAAC,cAAc,OAAO,KAAK,MAAM,CAAC,MAAM,SAAS,CAAC,CAAC;QACtD,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC,GAAG,OAAO,MAAM,CAAC,EAAE,CAAC;IACpF,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,GAAG,CAAC,uBAAuB,KAAK,EAAE,CAAC,CAAC;QACpC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,IAAI,EAAE,EAAE,EAAE,KAAK,EAAE,EAAE,EAAE,KAAK,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,CAAC;IACtF,CAAC;AACH,CAAC;AAED,KAAK,UAAU,YAAY,CAAC,GAAW;IACrC,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,OAAO,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACxE,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;QAC5B,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;QAC5C,IAAI,KAAK,CAAC,WAAW,EAAE,EAAE,CAAC;YACxB,MAAM,QAAQ,GAAG,MAAM,YAAY,CAAC,QAAQ,CAAC,CAAC;YAC9C,KAAK,CAAC,IAAI,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QAC/D,CAAC;aAAM,IAAI,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE,CAAC;YACvC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QACzB,CAAC;IACH,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,uBAAuB;IACrC,OAAO;QACL,KAAK,EAAE,gBAAgB;QACvB,IAAI,EAAE,gBAAgB;QACtB,WAAW,EAAE,sHAAsH;QACnI,UAAU,EAAE,mBAAmB;QAC/B,OAAO,EAAE,KAAK,EAAE,WAAmB,EAAE,OAAgB,EAAE,EAAE;YACvD,MAAM,MAAM,GAAG,OAAkC,CAAC;YAClD,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;YACrD,MAAM,SAAS,GAAG,eAAe,CAAC,MAAM,EAAE,YAAY,CAAC,IAAI,QAAQ,CAAC;YAEpE,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBAC1B,OAAO,MAAM,CAAC,GAAG,CAAC,gBAAgB,EAAE,qCAAqC,CAAC,CAAC;YAC7E,CAAC;YAED,MAAM,iBAAiB,GAAG,IAAI,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YAElD,MAAM,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,iBAAiB,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;YAEhE,MAAM,MAAM,GAAG,EAAE,KAAK,EAAE,CAAC,GAAW,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,GAAG,EAAE,CAAC,EAAE,CAAC;YAClF,MAAM,SAAS,GAQV,EAAE,CAAC;YAER,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACzC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;gBAE5B,sDAAsD;gBACtD,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;oBACV,MAAM,KAAK,CAAC,aAAa,CAAC,CAAC;gBAC7B,CAAC;gBAED,uDAAuD;gBACvD,MAAM,MAAM,GAAG,MAAM,iBAAiB,CAAC,OAAO,EAAE,iBAAiB,EAAE,MAAM,CAAC,CAAC;gBAE3E,SAAS,CAAC,IAAI,CAAC;oBACb,QAAQ,EAAE,OAAO;oBACjB,OAAO,EAAE,MAAM,CAAC,OAAO;oBACvB,MAAM,EAAE,MAAM,CAAC,MAAM;oBACrB,IAAI,EAAE,MAAM,CAAC,IAAI;oBACjB,KAAK,EAAE,MAAM,CAAC,KAAK;oBACnB,KAAK,EAAE,MAAM,CAAC,KAAK;oBACnB,eAAe,EAAE,MAAM,CAAC,cAAc;iBACvC,CAAC,CAAC;YACL,CAAC;YAED,MAAM,UAAU,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC;YAC7D,MAAM,MAAM,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC;YAE1D,OAAO,MAAM,CAAC,EAAE,CAAC;gBACf,UAAU,EAAE,iBAAiB;gBAC7B,KAAK,EAAE,QAAQ,CAAC,MAAM;gBACtB,UAAU;gBACV,MAAM;gBACN,SAAS;aACV,CAAC,CAAC;QACL,CAAC;KACF,CAAC;AACJ,CAAC"}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
export declare const UnpaywallDownloadToolSchema: import("@sinclair/typebox").TObject<{
|
|
2
2
|
dois: import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>;
|
|
3
|
-
output_dir: import("@sinclair/typebox").TString
|
|
3
|
+
output_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
|
|
4
4
|
}>;
|
|
5
5
|
export declare function createUnpaywallDownloadTool(): {
|
|
6
6
|
label: string;
|
|
@@ -8,7 +8,7 @@ export declare function createUnpaywallDownloadTool(): {
|
|
|
8
8
|
description: string;
|
|
9
9
|
parameters: import("@sinclair/typebox").TObject<{
|
|
10
10
|
dois: import("@sinclair/typebox").TArray<import("@sinclair/typebox").TString>;
|
|
11
|
-
output_dir: import("@sinclair/typebox").TString
|
|
11
|
+
output_dir: import("@sinclair/typebox").TOptional<import("@sinclair/typebox").TString>;
|
|
12
12
|
}>;
|
|
13
13
|
execute: (_toolCallId: string, rawArgs: unknown) => Promise<{
|
|
14
14
|
type: "tool_result";
|
|
@@ -10,9 +10,9 @@ export const UnpaywallDownloadToolSchema = Type.Object({
|
|
|
10
10
|
minItems: 1,
|
|
11
11
|
maxItems: 20,
|
|
12
12
|
}),
|
|
13
|
-
output_dir: Type.String({
|
|
14
|
-
description: "
|
|
15
|
-
}),
|
|
13
|
+
output_dir: Type.Optional(Type.String({
|
|
14
|
+
description: "Output directory where PDFs will be saved. Defaults to 'papers/' relative to cwd. Can be relative or absolute.",
|
|
15
|
+
})),
|
|
16
16
|
});
|
|
17
17
|
function readStringParam(params, key, opts) {
|
|
18
18
|
const value = params[key];
|
|
@@ -61,7 +61,7 @@ export function createUnpaywallDownloadTool() {
|
|
|
61
61
|
return Result.err("invalid_input", "dois must be a non-empty array");
|
|
62
62
|
}
|
|
63
63
|
const dois = doisRaw.map((d) => String(d).trim()).filter((d) => d.length > 0);
|
|
64
|
-
const outputDir = readStringParam(params, "output_dir"
|
|
64
|
+
const outputDir = readStringParam(params, "output_dir") ?? "papers";
|
|
65
65
|
const resolvedOutputDir = resolve(outputDir);
|
|
66
66
|
// Create output directory if it doesn't exist
|
|
67
67
|
try {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"unpaywall-download.js","sourceRoot":"","sources":["../../../src/tools/unpaywall-download.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACzC,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AAC/D,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAErC,MAAM,aAAa,GAAG,8BAA8B,CAAC;AACrD,MAAM,UAAU,GAAG,sBAAsB,CAAC,CAAC,wBAAwB;AAEnE,MAAM,CAAC,MAAM,2BAA2B,GAAG,IAAI,CAAC,MAAM,CAAC;IACrD,IAAI,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE;QAC9B,WAAW,EAAE,+FAA+F;QAC5G,QAAQ,EAAE,CAAC;QACX,QAAQ,EAAE,EAAE;KACb,CAAC;IACF,UAAU,EAAE,IAAI,CAAC,MAAM,CAAC;
|
|
1
|
+
{"version":3,"file":"unpaywall-download.js","sourceRoot":"","sources":["../../../src/tools/unpaywall-download.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,mBAAmB,CAAC;AACzC,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AAC/D,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAErC,MAAM,aAAa,GAAG,8BAA8B,CAAC;AACrD,MAAM,UAAU,GAAG,sBAAsB,CAAC,CAAC,wBAAwB;AAEnE,MAAM,CAAC,MAAM,2BAA2B,GAAG,IAAI,CAAC,MAAM,CAAC;IACrD,IAAI,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE;QAC9B,WAAW,EAAE,+FAA+F;QAC5G,QAAQ,EAAE,CAAC;QACX,QAAQ,EAAE,EAAE;KACb,CAAC;IACF,UAAU,EAAE,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC;QACpC,WAAW,EAAE,gHAAgH;KAC9H,CAAC,CAAC;CACJ,CAAC,CAAC;AAeH,SAAS,eAAe,CAAC,MAA+B,EAAE,GAAW,EAAE,IAA6B;IAClG,MAAM,KAAK,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC;IAC1B,IAAI,KAAK,KAAK,SAAS,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;QAC1C,IAAI,IAAI,EAAE,QAAQ,EAAE,CAAC;YACnB,MAAM,IAAI,KAAK,CAAC,+BAA+B,GAAG,EAAE,CAAC,CAAC;QACxD,CAAC;QACD,OAAO,SAAS,CAAC;IACnB,CAAC;IACD,OAAO,MAAM,CAAC,KAAK,CAAC,CAAC;AACvB,CAAC;AAED,KAAK,UAAU,WAAW,CAAC,GAAW,EAAE,UAAkB;IACxD,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE;YAChC,OAAO,EAAE;gBACP,YAAY,EAAE,4DAA4D;aAC3E;YACD,QAAQ,EAAE,QAAQ;SACnB,CAAC,CAAC;QAEH,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,OAAO,KAAK,CAAC;QACf,CAAC;QAED,MAAM,WAAW,GAAG,QAAQ,CAAC,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,EAAE,CAAC;QAC/D,IAAI,CAAC,WAAW,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,WAAW,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE,CAAC;YAC1E,wCAAwC;YACxC,OAAO,KAAK,CAAC;QACf,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,QAAQ,CAAC,WAAW,EAAE,CAAC;QAC5C,aAAa,CAAC,UAAU,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;QAC/C,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED,MAAM,UAAU,2BAA2B;IACzC,OAAO;QACL,KAAK,EAAE,oBAAoB;QAC3B,IAAI,EAAE,oBAAoB;QAC1B,WAAW,EACT,mMAAmM;QACrM,UAAU,EAAE,2BAA2B;QACvC,OAAO,EAAE,KAAK,EAAE,WAAmB,EAAE,OAAgB,EAAE,EAAE;YACvD,MAAM,MAAM,GAAG,OAAkC,CAAC;YAClD,MAAM,OAAO,GAAG,MAAM,CAAC,IAAI,CAAC;YAC5B,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBACpD,OAAO,MAAM,CAAC,GAAG,CAAC,eAAe,EAAE,gCAAgC,CAAC,CAAC;YACvE,CAAC;YACD,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;YAE9E,MAAM,SAAS,GAAG,eAAe,CAAC,MAAM,EAAE,YAAY,CAAC,IAAI,QAAQ,CAAC;YACpE,MAAM,iBAAiB,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC;YAE7C,8CAA8C;YAC9C,IAAI,CAAC;gBACH,IAAI,CAAC,UAAU,CAAC,iBAAiB,CAAC,EAAE,CAAC;oBACnC,SAAS,CAAC,iBAAiB,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;gBACpD,CAAC;YACH,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,OAAO,MAAM,CAAC,GAAG,CAAC,kBAAkB,EAAE,sCAAsC,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;YACxI,CAAC;YAED,MAAM,OAAO,GAMR,EAAE,CAAC;YAER,IAAI,YAAY,GAAG,CAAC,CAAC;YACrB,IAAI,UAAU,GAAG,CAAC,CAAC;YACnB,IAAI,WAAW,GAAG,CAAC,CAAC;YAEpB,mBAAmB;YACnB,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;gBACvB,IAAI,CAAC;oBACH,sBAAsB;oBACtB,MAAM,MAAM,GAAG,GAAG,aAAa,IAAI,kBAAkB,CAAC,GAAG,CAAC,UAAU,UAAU,EAAE,CAAC;oBACjF,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,MAAM,EAAE;wBACnC,OAAO,EAAE;4BACP,YAAY,EAAE,4DAA4D;yBAC3E;qBACF,CAAC,CAAC;oBAEH,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;wBACjB,OAAO,CAAC,IAAI,CAAC;4BACX,GAAG;4BACH,MAAM,EAAE,WAAW;4BACnB,OAAO,EAAE,cAAc,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,EAAE;yBAChE,CAAC,CAAC;wBACH,WAAW,EAAE,CAAC;wBACd,SAAS;oBACX,CAAC;oBAED,MAAM,IAAI,GAAG,CAAC,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAsB,CAAC;oBAE1D,wBAAwB;oBACxB,IAAI,CAAC,IAAI,CAAC,KAAK,IAAI,CAAC,IAAI,CAAC,gBAAgB,EAAE,CAAC;wBAC1C,OAAO,CAAC,IAAI,CAAC;4BACX,GAAG;4BACH,MAAM,EAAE,QAAQ;4BAChB,OAAO,EAAE,0BAA0B;4BACnC,KAAK,EAAE,IAAI,CAAC,KAAK;yBAClB,CAAC,CAAC;wBACH,UAAU,EAAE,CAAC;wBACb,SAAS;oBACX,CAAC;oBAED,cAAc;oBACd,MAAM,MAAM,GAAG,IAAI,CAAC,gBAAgB,CAAC,WAAW,IAAI,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC;oBAC9E,IAAI,CAAC,MAAM,EAAE,CAAC;wBACZ,OAAO,CAAC,IAAI,CAAC;4BACX,GAAG;4BACH,MAAM,EAAE,YAAY;4BACpB,OAAO,EAAE,sBAAsB;4BAC/B,KAAK,EAAE,IAAI,CAAC,KAAK;yBAClB,CAAC,CAAC;wBACH,WAAW,EAAE,CAAC;wBACd,SAAS;oBACX,CAAC;oBAED,eAAe;oBACf,MAAM,YAAY,GAAG,GAAG,CAAC,OAAO,CAAC,UAAU,EAAE,GAAG,CAAC,CAAC;oBAClD,MAAM,QAAQ,GAAG,GAAG,YAAY,MAAM,CAAC;oBACvC,MAAM,UAAU,GAAG,IAAI,CAAC,iBAAiB,EAAE,QAAQ,CAAC,CAAC;oBAErD,MAAM,UAAU,GAAG,MAAM,WAAW,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;oBAEzD,IAAI,UAAU,EAAE,CAAC;wBACf,OAAO,CAAC,IAAI,CAAC;4BACX,GAAG;4BACH,MAAM,EAAE,SAAS;4BACjB,OAAO,EAAE,yBAAyB;4BAClC,SAAS,EAAE,UAAU;4BACrB,KAAK,EAAE,IAAI,CAAC,KAAK;yBAClB,CAAC,CAAC;wBACH,YAAY,EAAE,CAAC;oBACjB,CAAC;yBAAM,CAAC;wBACN,OAAO,CAAC,IAAI,CAAC;4BACX,GAAG;4BACH,MAAM,EAAE,iBAAiB;4BACzB,OAAO,EAAE,sEAAsE;4BAC/E,KAAK,EAAE,IAAI,CAAC,KAAK;yBAClB,CAAC,CAAC;wBACH,WAAW,EAAE,CAAC;oBAChB,CAAC;gBACH,CAAC;gBAAC,OAAO,KAAK,EAAE,CAAC;oBACf,OAAO,CAAC,IAAI,CAAC;wBACX,GAAG;wBACH,MAAM,EAAE,WAAW;wBACnB,OAAO,EAAE,qBAAqB,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE;qBACvF,CAAC,CAAC;oBACH,WAAW,EAAE,CAAC;gBAChB,CAAC;gBAED,8CAA8C;gBAC9C,MAAM,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,GAAG,CAAC,CAAC,CAAC;YAC3D,CAAC;YAED,OAAO,MAAM,CAAC,EAAE,CAAC;gBACf,KAAK,EAAE,IAAI,CAAC,MAAM;gBAClB,OAAO,EAAE,YAAY;gBACrB,MAAM,EAAE,UAAU;gBAClB,MAAM,EAAE,WAAW;gBACnB,UAAU,EAAE,iBAAiB;gBAC7B,OAAO;aACR,CAAC,CAAC;QACL,CAAC;KACF,CAAC;AACJ,CAAC"}
|
package/openclaw.plugin.json
CHANGED
|
@@ -27,8 +27,10 @@
|
|
|
27
27
|
"skills/research-implement",
|
|
28
28
|
"skills/research-review",
|
|
29
29
|
"skills/research-experiment",
|
|
30
|
-
"skills/
|
|
30
|
+
"skills/research-collect",
|
|
31
31
|
"skills/write-review-paper",
|
|
32
|
-
"skills/research-subscription"
|
|
32
|
+
"skills/research-subscription",
|
|
33
|
+
"skills/metabolism",
|
|
34
|
+
"skills/metabolism-init"
|
|
33
35
|
]
|
|
34
36
|
}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "scientify",
|
|
3
|
-
"version": "1.
|
|
3
|
+
"version": "1.12.0",
|
|
4
4
|
"description": "Scientify - AI-powered research workflow automation for OpenClaw. Includes idea generation, literature review, research pipeline skills, and arxiv tool.",
|
|
5
5
|
"type": "module",
|
|
6
6
|
"main": "dist/index.js",
|
|
@@ -19,32 +19,27 @@ Generate innovative research ideas grounded in literature analysis. This skill r
|
|
|
19
19
|
|
|
20
20
|
**Core principle:** Ideas MUST be grounded in actual papers, not generated from model knowledge.
|
|
21
21
|
|
|
22
|
-
**Workspace:**
|
|
22
|
+
**Workspace:** `$W` = working directory provided in task parameter. Outputs go to `$W/ideas/`.
|
|
23
23
|
|
|
24
24
|
---
|
|
25
25
|
|
|
26
26
|
## Step 1: Check Workspace Resources
|
|
27
27
|
|
|
28
|
-
First, check what resources already exist
|
|
28
|
+
First, check what resources already exist in `$W`:
|
|
29
29
|
|
|
30
30
|
```bash
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
# Check papers
|
|
35
|
-
ls ~/.openclaw/workspace/projects/*/papers/ 2>/dev/null | head -20
|
|
36
|
-
|
|
37
|
-
# Check survey results
|
|
38
|
-
cat ~/.openclaw/workspace/projects/*/survey/clusters.json 2>/dev/null | head -5
|
|
31
|
+
ls $W/papers/ 2>/dev/null | head -20
|
|
32
|
+
ls $W/papers/_meta/ 2>/dev/null | head -10
|
|
33
|
+
ls $W/survey/ 2>/dev/null
|
|
39
34
|
```
|
|
40
35
|
|
|
41
36
|
### Assess Available Resources
|
|
42
37
|
|
|
43
38
|
| Resource | Location | Status |
|
|
44
39
|
|----------|----------|--------|
|
|
45
|
-
| Papers | `$
|
|
46
|
-
| Survey clusters | `$
|
|
47
|
-
| Repos | `$
|
|
40
|
+
| Papers | `$W/papers/` | Count: ? |
|
|
41
|
+
| Survey clusters | `$W/survey/clusters.json` | Exists: Y/N |
|
|
42
|
+
| Repos | `$W/repos/` | Count: ? |
|
|
48
43
|
|
|
49
44
|
---
|
|
50
45
|
|
|
@@ -57,14 +52,14 @@ Based on workspace state, ask user:
|
|
|
57
52
|
>
|
|
58
53
|
> Options:
|
|
59
54
|
> 1. **Use existing papers** - Generate ideas from current collection
|
|
60
|
-
> 2. **Search more** - Run `/
|
|
55
|
+
> 2. **Search more** - Run `/research-collect` to expand collection
|
|
61
56
|
> 3. **Quick search** - Add 5-10 more papers on specific topic
|
|
62
57
|
|
|
63
58
|
**If no papers:**
|
|
64
59
|
> 📭 No papers found in workspace.
|
|
65
60
|
>
|
|
66
61
|
> To generate grounded ideas, I need literature. Options:
|
|
67
|
-
> 1. **Run /
|
|
62
|
+
> 1. **Run /research-collect** - Comprehensive search (100+ papers, recommended)
|
|
68
63
|
> 2. **Quick search** - Fetch 10-15 papers on your topic now
|
|
69
64
|
> 3. **You provide papers** - Point me to existing PDFs/tex files
|
|
70
65
|
|
|
@@ -72,17 +67,17 @@ Based on workspace state, ask user:
|
|
|
72
67
|
|
|
73
68
|
## Step 3: Acquire Resources (if needed)
|
|
74
69
|
|
|
75
|
-
### Option A: Delegate to /
|
|
70
|
+
### Option A: Delegate to /research-collect (Recommended)
|
|
76
71
|
|
|
77
72
|
If user wants comprehensive search:
|
|
78
73
|
```
|
|
79
|
-
Please run: /
|
|
74
|
+
Please run: /research-collect {topic}
|
|
80
75
|
|
|
81
76
|
This will:
|
|
82
77
|
- Search 100+ papers systematically
|
|
83
78
|
- Filter by relevance (score ≥4)
|
|
84
79
|
- Cluster into research directions
|
|
85
|
-
- Save to $
|
|
80
|
+
- Save to $W/papers/
|
|
86
81
|
|
|
87
82
|
After survey completes, run /idea-generation again.
|
|
88
83
|
```
|
|
@@ -101,21 +96,21 @@ Arguments:
|
|
|
101
96
|
|
|
102
97
|
2. **Clone 3-5 reference repos:**
|
|
103
98
|
```bash
|
|
104
|
-
mkdir -p $
|
|
105
|
-
git clone --depth 1 {repo_url} $
|
|
99
|
+
mkdir -p $W/repos
|
|
100
|
+
git clone --depth 1 {repo_url} $W/repos/{name}
|
|
106
101
|
```
|
|
107
102
|
|
|
108
103
|
3. **Download paper sources:**
|
|
109
104
|
```bash
|
|
110
|
-
mkdir -p $
|
|
111
|
-
curl -L "https://arxiv.org/src/{arxiv_id}" | tar -xz -C $
|
|
105
|
+
mkdir -p $W/papers/{arxiv_id}
|
|
106
|
+
curl -L "https://arxiv.org/src/{arxiv_id}" | tar -xz -C $W/papers/{arxiv_id}
|
|
112
107
|
```
|
|
113
108
|
|
|
114
109
|
---
|
|
115
110
|
|
|
116
111
|
## Step 4: Analyze Literature
|
|
117
112
|
|
|
118
|
-
**Prerequisites:** At least 5 papers in `$
|
|
113
|
+
**Prerequisites:** At least 5 papers in `$W/papers/`
|
|
119
114
|
|
|
120
115
|
### 4.1 Read Papers
|
|
121
116
|
|
|
@@ -135,7 +130,7 @@ Look for:
|
|
|
135
130
|
- Scalability issues
|
|
136
131
|
- Assumptions that could be relaxed
|
|
137
132
|
|
|
138
|
-
Document gaps in `$
|
|
133
|
+
Document gaps in `$W/ideas/gaps.md`:
|
|
139
134
|
```markdown
|
|
140
135
|
# Research Gaps Identified
|
|
141
136
|
|
|
@@ -151,7 +146,7 @@ Document gaps in `$WORKSPACE/ideas/gaps.md`:
|
|
|
151
146
|
|
|
152
147
|
## Step 5: Generate 5 Ideas
|
|
153
148
|
|
|
154
|
-
Create `$
|
|
149
|
+
Create `$W/ideas/idea_1.md` through `idea_5.md` using template in `references/idea-template.md`.
|
|
155
150
|
|
|
156
151
|
**Requirements:**
|
|
157
152
|
- Each idea cites ≥2 papers by arXiv ID
|
|
@@ -180,7 +175,7 @@ Create `$WORKSPACE/ideas/idea_1.md` through `idea_5.md` using template in `refer
|
|
|
180
175
|
|
|
181
176
|
### 6.2 Enhance Selected Idea
|
|
182
177
|
|
|
183
|
-
Create `$
|
|
178
|
+
Create `$W/ideas/selected_idea.md` with:
|
|
184
179
|
- Detailed math (loss functions, gradients)
|
|
185
180
|
- Architecture choices
|
|
186
181
|
- Hyperparameters
|
|
@@ -210,13 +205,13 @@ Map idea concepts to reference implementations.
|
|
|
210
205
|
|
|
211
206
|
See `references/code-mapping.md` for template.
|
|
212
207
|
|
|
213
|
-
**Output:** `$
|
|
208
|
+
**Output:** `$W/ideas/implementation_report.md`
|
|
214
209
|
|
|
215
210
|
---
|
|
216
211
|
|
|
217
212
|
## Step 8: Summary
|
|
218
213
|
|
|
219
|
-
Create `$
|
|
214
|
+
Create `$W/ideas/summary.md`:
|
|
220
215
|
- All 5 ideas with scores
|
|
221
216
|
- Selected idea details
|
|
222
217
|
- Next steps: `/research-pipeline` to implement
|
|
@@ -236,6 +231,6 @@ Create `$WORKSPACE/ideas/summary.md`:
|
|
|
236
231
|
|
|
237
232
|
## Integration
|
|
238
233
|
|
|
239
|
-
- **Before:** `/
|
|
234
|
+
- **Before:** `/research-collect` to collect papers
|
|
240
235
|
- **After:** `/research-pipeline` to implement selected idea
|
|
241
236
|
- **Alternative:** `/write-review-paper` to write survey instead
|
|
@@ -0,0 +1,118 @@
|
|
|
1
|
+
---
|
|
2
|
+
name: metabolism
|
|
3
|
+
description: "Knowledge metabolism cycle: ingest new papers, update knowledge state, detect cross-topic links, generate hypotheses. Use /metabolism to trigger manually."
|
|
4
|
+
user-invokable: true
|
|
5
|
+
---
|
|
6
|
+
|
|
7
|
+
# Continuous Knowledge Metabolism — Incremental Cycle
|
|
8
|
+
|
|
9
|
+
你正在执行知识新陈代谢循环。严格按以下步骤执行。
|
|
10
|
+
|
|
11
|
+
**前提：** `metabolism/config.json` 必须已存在且 `currentDay >= 1`。如果不存在或 `currentDay` 为 0，提示用户先执行 /metabolism-init 完成初始化。
|
|
12
|
+
|
|
13
|
+
## 准备
|
|
14
|
+
|
|
15
|
+
1. 读取 `metabolism/config.json` 获取关键词、arXiv 分类、`processed_ids` 和 `currentDay`
|
|
16
|
+
2. 读取 `metabolism/knowledge/_index.md` 获取当前知识状态
|
|
17
|
+
|
|
18
|
+
## Step 1: Search（增量搜索）
|
|
19
|
+
|
|
20
|
+
用滑动窗口（过去 5 天）搜索，靠 `processed_ids` 去重：
|
|
21
|
+
|
|
22
|
+
```
|
|
23
|
+
arxiv_search({
|
|
24
|
+
query: "{keywords} AND cat:{category}",
|
|
25
|
+
date_from: "{5天前 YYYY-MM-DD}",
|
|
26
|
+
sort_by: "submittedDate",
|
|
27
|
+
max_results: 30
|
|
28
|
+
})
|
|
29
|
+
|
|
30
|
+
openalex_search({
|
|
31
|
+
query: "{keywords}",
|
|
32
|
+
filter: "from_publication_date:{5天前 YYYY-MM-DD}",
|
|
33
|
+
sort: "publication_date",
|
|
34
|
+
max_results: 20
|
|
35
|
+
})
|
|
36
|
+
```
|
|
37
|
+
|
|
38
|
+
合并结果，按 arXiv ID / DOI 去重，**跳过 `processed_ids` 中已有的论文**。
|
|
39
|
+
|
|
40
|
+
下载新论文：
|
|
41
|
+
|
|
42
|
+
```
|
|
43
|
+
arxiv_download({ arxiv_ids: ["{id1}", "{id2}", ...] })
|
|
44
|
+
unpaywall_download({ dois: ["{doi1}", "{doi2}", ...] })
|
|
45
|
+
```
|
|
46
|
+
|
|
47
|
+
## Step 2: Read（阅读）
|
|
48
|
+
|
|
49
|
+
对每篇新论文：
|
|
50
|
+
- 读 .tex 源码（优先）或 PDF
|
|
51
|
+
- 提取：核心方法、关键结论、与已有知识的关系
|
|
52
|
+
|
|
53
|
+
将每篇论文的 arXiv ID / DOI 追加到 `config.json` 的 `processed_ids`。
|
|
54
|
+
|
|
55
|
+
## Step 3: Update Knowledge
|
|
56
|
+
|
|
57
|
+
读取当前 `metabolism/knowledge/_index.md` 和相关 `topic-*.md`，根据今日阅读的论文更新。
|
|
58
|
+
|
|
59
|
+
**更新原则：**
|
|
60
|
+
- 新发现 → 添加到相关章节
|
|
61
|
+
- 印证已有认知 → 补充证据来源
|
|
62
|
+
- 与已有认知矛盾 → 标注分歧，保留两方论据
|
|
63
|
+
- 跨领域关联 → 记录连接
|
|
64
|
+
|
|
65
|
+
**篇幅管理：** 每个 topic 文件控制在 200 行以内。接近上限时，压缩早期内容（合并相似结论、删除低价值条目），保留信息密度。不要为了压缩而丢失关键结论和来源引用。
|
|
66
|
+
|
|
67
|
+
## Step 4: Hypothesize（假设）
|
|
68
|
+
|
|
69
|
+
更新完 knowledge.md 后，回顾今日新增内容，自问：
|
|
70
|
+
|
|
71
|
+
- 有没有反复出现但尚未被验证的模式？
|
|
72
|
+
- 有没有两个独立发现组合后暗示的新方向？
|
|
73
|
+
- 有没有现有方法的明显空白？
|
|
74
|
+
|
|
75
|
+
**有想法** → 写入 `metabolism/hypotheses/hyp-{NNN}.md`：
|
|
76
|
+
|
|
77
|
+
```markdown
|
|
78
|
+
# Hypothesis {NNN}
|
|
79
|
+
|
|
80
|
+
## 假设
|
|
81
|
+
{一句话}
|
|
82
|
+
|
|
83
|
+
## 推理过程
|
|
84
|
+
{基于哪些论文/知识得出，2-3 段}
|
|
85
|
+
|
|
86
|
+
## 来源论文
|
|
87
|
+
- {arxiv_id}: {title}
|
|
88
|
+
|
|
89
|
+
## 自评
|
|
90
|
+
- 新颖性: {1-5}
|
|
91
|
+
- 可行性: {1-5}
|
|
92
|
+
- 影响力: {1-5}
|
|
93
|
+
```
|
|
94
|
+
|
|
95
|
+
然后用 `sessions_send` 通知 main session。
|
|
96
|
+
|
|
97
|
+
**没有想法** → 跳过，不要硬凑。
|
|
98
|
+
|
|
99
|
+
## Step 5: Log & Finish
|
|
100
|
+
|
|
101
|
+
写入 `metabolism/log/{YYYY-MM-DD}.md`：
|
|
102
|
+
|
|
103
|
+
```markdown
|
|
104
|
+
# Day {currentDay} — {YYYY-MM-DD}
|
|
105
|
+
|
|
106
|
+
新论文: {N} 篇
|
|
107
|
+
知识更新: {简述主要变更}
|
|
108
|
+
假设: {有/无}
|
|
109
|
+
```
|
|
110
|
+
|
|
111
|
+
更新 `config.json`：`currentDay` +1。
|
|
112
|
+
|
|
113
|
+
## 行为约束
|
|
114
|
+
|
|
115
|
+
1. 不捏造论文中未出现的事实性声明，但可以用自身知识做推理和关联判断
|
|
116
|
+
2. 没有想法时不生成假设
|
|
117
|
+
3. 自主运行，不向人类提问
|
|
118
|
+
4. 修改知识文件前必须先读取当前内容
|