scai 0.1.178 → 1.0.1

package/dist/daemon/runFolderCapsuleBatch.js.map

@@ -0,0 +1 @@
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fg from 'fast-glob';\nimport path from 'path';\nimport { getDbForRepo } from '../db/client.js';\nimport { log } from '../utils/log.js';\nimport { generate } from '../lib/generate.js';\nimport { cleanupModule } from '../pipeline/modules/cleanupModule.js';\nimport type { FolderCapsule } from '../types.js';\nimport { IGNORED_FOLDER_GLOBS } from '../fileRules/ignoredPaths.js';\n\nexport async function runFolderCapsuleBatch(maxFolders = 20): Promise<boolean> {\n    const db = getDbForRepo();\n\n    log('📦 Starting folder capsule batch...');\n\n    // --------------------------------------------------\n    // Stop if we already have enough capsules\n    // --------------------------------------------------\n    const existing = db.prepare(`SELECT COUNT(*) as c FROM folder_capsules`).get() as { c: number };\n    log(`📦 Existing folder capsules: ${existing.c}`);\n    if (existing.c >= maxFolders) {\n        log(`📦 Folder capsule batch: cap reached (${existing.c})`);\n        return false;\n    }\n\n    // --------------------------------------------------\n    // Scan folders with fast-glob\n    // --------------------------------------------------\n    log('🔍 Scanning folders...');\n    const folderPathsRaw = await fg('**/', {\n        cwd: process.cwd(),\n        onlyDirectories: true,\n        ignore: IGNORED_FOLDER_GLOBS,\n        dot: false,\n        absolute: true,\n    });\n\n    const folderPaths = folderPathsRaw.map(p => path.normalize(p).replace(/\\\\/g, '/'));\n    log(`📂 Found ${folderPaths.length} folders`);\n\n    if (!folderPaths.length) {\n        log('📦 No folders found after filtering');\n        return false;\n    }\n\n    // --------------------------------------------------\n    // Collect uncapsuled folders from DB\n    // --------------------------------------------------\n    log('📦 Collecting uncapsuled folders from DB...');\n    const uncapsuledFoldersRaw = db.prepare(`\n        SELECT folder, COUNT(*) AS fileCount\n        FROM (\n            SELECT substr(path, 1, length(path) - length(filename) - 1) AS folder,\n                   filename, type\n            FROM files\n            WHERE processing_status != 'skipped'\n        )\n        LEFT JOIN folder_capsules fc ON fc.path = folder\n        WHERE fc.path IS NULL\n        GROUP BY folder\n    `).all() as Array<{ folder: string; fileCount: number }>;\n\n    const uncapsuledFolders = uncapsuledFoldersRaw\n        .map(f => ({ ...f, folder: path.normalize(path.resolve(f.folder)).replace(/\\\\/g, '/') }))\n        .filter(f => folderPaths.includes(f.folder));\n\n    log(`📦 ${uncapsuledFolders.length} uncapsuled folders match actual paths`);\n\n    if (!uncapsuledFolders.length) {\n        log('📦 No uncapsuled folders found');\n        return false;\n    }\n\n    // --------------------------------------------------\n    // Heuristic folder scoring\n    // --------------------------------------------------\n    function scoreFolder(folder: string, fileCount: number): number {\n        let score = 0;\n        const depth = folder.split('/').length;\n        const p = folder.toLowerCase();\n\n        if (fileCount > 5) score += 2;\n        if (fileCount > 15) score += 2;\n        if (depth <= 6) score += 2;\n        if (/src|modules|pipeline|agents|services|commands|lib/.test(p)) score += 3;\n        if (/css|sql|html|assets/.test(p)) score -= 3;\n\n        return score;\n    }\n\n    const ranked = uncapsuledFolders\n        .map(f => ({ ...f, score: scoreFolder(f.folder, f.fileCount) }))\n        .sort((a, b) => b.score - a.score)\n        .slice(0, maxFolders);\n\n    log(`📦 Top ${ranked.length} folders selected for processing`);\n\n    // --------------------------------------------------\n    // Process each top folder with try/catch\n    // --------------------------------------------------\n    for (const target of ranked) {\n        const folderPath = target.folder;\n\n        if (!folderPath) {\n            log(`⚠️ Skipping folder because folderPath is undefined`);\n            continue;\n        }\n\n        try {\n            log(`📦 Building folder capsule: ${folderPath} (score=${target.score})`);\n\n            // --------------------------------------------------\n            // Load files in folder from DB (inline folderPath)\n            // --------------------------------------------------\n            const folderPathSQL = folderPath.replace(/'/g, \"''\"); // escape single quotes\n            const files = db.prepare(`\n                SELECT path, filename, type\n                FROM files\n                WHERE path LIKE '${folderPathSQL}/%' AND processing_status != 'skipped'\n            `).all() as Array<{ path: string; filename: string; type: string | null }>;\n\n            log(`📄 ${files.length} files found in folder`);\n\n            if (!files.length) {\n                log('⚠️ Folder empty, skipping');\n                continue;\n            }\n\n            // --------------------------------------------------\n            // Compute file-level scores\n            // --------------------------------------------------\n            const fileScores = files.map(f => {\n                const heuristicName = /index|main|cli|app|server|config/i.test(f.filename) ? 5 : 0;\n\n                const basename = path.basename(f.path).replace(/'/g, \"''\");\n                const incoming = db.prepare(`\n                    SELECT COUNT(*) AS c\n                    FROM files\n                    WHERE path LIKE '${folderPathSQL}/%' AND processing_status != 'skipped' AND content_text LIKE '%${basename}%'\n                `).get() as { c: number };\n                const incomingScore = (incoming?.c || 0) * 2;\n\n                const row = db.prepare(`SELECT content_text FROM files_fts WHERE path = '${f.path.replace(/'/g, \"''\")}'`).get() as { contentText?: string };\n                const code = row?.contentText || '';\n                const outgoingCount = (code.match(/from\\s+['\"].+['\"]/g)?.length || 0) + (code.match(/require\\(['\"].+['\"]\\)/g)?.length || 0);\n                const sizeScore = Math.min(code.length / 2000, 3);\n\n                const totalScore = heuristicName + incomingScore + outgoingCount + sizeScore;\n                log(`📄 File score: ${f.filename} -> ${totalScore}`);\n\n                return { ...f, score: totalScore };\n            });\n\n            const representativeFiles = fileScores.sort((a, b) => b.score - a.score).slice(0, 2);\n            log(`📌 Representative files: ${representativeFiles.map(f => f.filename).join(', ')}`);\n\n            const candidateFiles = representativeFiles.map(f => {\n                const row = db.prepare(`SELECT content_text FROM files_fts WHERE path = '${f.path.replace(/'/g, \"''\")}'`).get() as { contentText?: string };\n                return { path: f.path, code: row?.contentText?.slice(0, 2000) || '' };\n            });\n\n            // --------------------------------------------------\n            // Ask LLM to generate folder summary\n            // --------------------------------------------------\n            const prompt = `\nYou are analyzing a source code folder.\n\nFolder path:\n${folderPath}\n\nCandidate files with code snippets:\n${JSON.stringify(candidateFiles, null, 2)}\n\nTask:\n- Identify up to TWO files that best represent the purpose of this folder.\n- Explain the folder's responsibility in ONE concise sentence.\n- Return ONLY valid JSON.\n\nExpected JSON shape:\n{\n  \"summary\": \"one sentence description\",\n  \"files\": [\n    { \"path\": \"absolute/file/path\", \"summary\": \"optional short note\" }\n  ]\n}\n`.trim();\n\n            let folderSummary = '';\n            let keyFiles: Array<{ path: string; reason: string }> = [];\n\n            try {\n                log('🤖 Asking LLM for folder summary...');\n                const response = await generate({ content: prompt, query: '' });\n                const cleaned = await cleanupModule.run({ query: '', content: response.data });\n                const data = typeof cleaned.data === 'string' ? JSON.parse(cleaned.data) : cleaned.data;\n\n                if (data && typeof data === 'object') {\n                    if (typeof data.summary === 'string') folderSummary = data.summary;\n                    if (Array.isArray(data.files)) {\n                        keyFiles = data.files\n                            .filter((f: any) => typeof f?.path === 'string')\n                            .slice(0, 2)\n                            .map((f: any) => ({ path: f.path, reason: f.summary || f.reason || 'representative file' }));\n                    }\n                }\n\n                log(`📌 Folder summary: ${folderSummary}`);\n            } catch (err: unknown) {\n                if (err instanceof Error) {\n                    log(`🔥 Failed processing folder ${folderPath}: ${err.message}\\n${err.stack}`);\n                } else {\n                    log(`🔥 Failed processing folder ${folderPath}:`, err);\n                }\n            }\n\n            // --------------------------------------------------\n            // Compute stats by file type\n            // --------------------------------------------------\n            const byType: Record<string, number> = {};\n            for (const f of files) {\n                const ext = f.type || path.extname(f.filename || '').replace('.', '') || 'unknown';\n                byType[ext] = (byType[ext] || 0) + 1;\n            }\n\n            // --------------------------------------------------\n            // Folder-level dependencies\n            // --------------------------------------------------\n            const importsFrom = new Set<string>();\n            for (const f of files) {\n                const dir = path.dirname(f.path).replace(/\\\\/g, '/');\n                if (dir !== folderPath) importsFrom.add(dir);\n            }\n\n            // --------------------------------------------------\n            // Build capsule\n            // --------------------------------------------------\n            const capsule: FolderCapsule & { summary?: string } = {\n                path: folderPath,\n                depth: folderPath.split('/').length,\n                stats: { fileCount: files.length, byType },\n                roles: [],\n                concerns: [],\n                keyFiles,\n                dependencies: { importsFrom: Array.from(importsFrom), usedBy: [] },\n                summary: folderSummary,\n                confidence: Math.min(0.9, 0.4 + target.score * 0.1),\n            };\n\n            // --------------------------------------------------\n            // Persist capsule safely using parameterized queries\n            // --------------------------------------------------\n            const now = new Date().toISOString();\n\n            // Insert folder capsule\n            db.prepare(`\n    INSERT INTO folder_capsules (\n        path, depth, capsule_json, confidence, last_generated, source_file_count\n    ) VALUES (?, ?, ?, ?, ?, ?)\n`).run(\n                capsule.path,\n                capsule.depth,\n                JSON.stringify(capsule),\n                capsule.confidence,\n                now,\n                files.length\n            );\n\n            // Update file processing status\n            db.prepare(`\n    UPDATE files\n    SET processing_status = 'capsuled'\n    WHERE path LIKE ?\n`).run(`${folderPath}/%`);\n\n            log(`✅ Folder capsule written: ${folderPath}`);\n\n\n        } catch (err: unknown) {\n            if (err instanceof Error) {\n                log(`🔥 Failed processing folder ${folderPath}: ${err.message}\\n${err.stack}`);\n            } else {\n                log(`🔥 Failed processing folder ${folderPath}:`, err);\n            }\n        }\n    }\n\n    log('📦 Folder capsule batch complete.');\n    return true;\n}\n"]}

package/dist/daemon/runIndexingBatch.js

@@ -145,3 +145,4 @@ export async function runIndexingBatch() {
         }
     }
 }
+//# sourceMappingURL=runIndexingBatch.js.map

package/dist/daemon/runIndexingBatch.js.map

@@ -0,0 +1 @@
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fs from 'fs';\r\nimport path from 'path';\r\nimport lockfile from 'proper-lockfile';\r\n\r\nimport { log } from '../utils/log.js';\r\nimport { getDbForRepo, getDbPathForRepo } from '../db/client.js';\r\nimport { sleep } from '../utils/sleep.js';\r\nimport {\r\n  selectUnprocessedFiles,\r\n  markFileAsSkippedByPath,\r\n  countUnprocessedFiles,\r\n  upsertFileTemplate,\r\n  upsertFileFtsTemplate,\r\n  markFileAsIndexed\r\n} from '../db/sqlTemplates.js';\r\n\r\n// --------------------------------------------------\r\n// DB LOCK\r\n// --------------------------------------------------\r\nasync function lockDbWithRetry(retries = 3, delayMs = 100) {\r\n  for (let i = 0; i < retries; i++) {\r\n    try {\r\n      return await lockfile.lock(getDbPathForRepo());\r\n    } catch (err) {\r\n      if (i < retries - 1) {\r\n        log(`⏳ DB lock busy, retrying... (${i + 1})`);\r\n        await sleep(delayMs);\r\n      } else {\r\n        log('❌ Failed to acquire DB lock after retries:', err);\r\n        throw err;\r\n      }\r\n    }\r\n  }\r\n}\r\n\r\n// --------------------------------------------------\r\n// SINGLE FILE INDEXER (daemon-side)\r\n// --------------------------------------------------\r\nexport function indexFile(filePath: string, summary: string | null, type: string) {\r\n  const stats = fs.statSync(filePath);\r\n  const lastModified = stats.mtime.toISOString();\r\n  const indexedAt = new Date().toISOString();\r\n\r\n  const normalizedPath = path.normalize(filePath).replace(/\\\\/g, '/');\r\n  const filename = path.basename(normalizedPath);\r\n\r\n  // ----------------------------------------------\r\n  // Extract text content (guarded)\r\n  // ----------------------------------------------\r\n  let contentText = '';\r\n\r\n  try {\r\n    if (stats.size <= 2_000_000) {\r\n      const buffer = fs.readFileSync(filePath);\r\n\r\n      const nonTextRatio =\r\n        buffer\r\n          .slice(0, 1000)\r\n          .filter(b => b < 9 || (b > 13 && b < 32))\r\n          .length / Math.min(buffer.length, 1000);\r\n\r\n      if (nonTextRatio <= 0.3) {\r\n        contentText = buffer.toString('utf-8');\r\n      } else {\r\n        log(`⚠️ Binary-like content skipped: ${normalizedPath}`);\r\n      }\r\n    } else {\r\n      log(`⚠️ Large file content skipped: ${normalizedPath}`);\r\n    }\r\n  } catch (err) {\r\n    log(`⚠️ Failed reading content: ${normalizedPath}`, err);\r\n  }\r\n\r\n  const db = getDbForRepo();\r\n\r\n  // ----------------------------------------------\r\n  // Metadata upsert\r\n  // ----------------------------------------------\r\n  try {\r\n    db.prepare(upsertFileTemplate).run({\r\n      path: normalizedPath,\r\n      filename,\r\n      summary,\r\n      type,\r\n      lastModified,\r\n      indexedAt,\r\n    });\r\n  } catch (err) {\r\n    log(`⚠️ Failed metadata upsert for ${normalizedPath}:`, err);\r\n  }\r\n\r\n  // ----------------------------------------------\r\n  // FTS upsert\r\n  // ----------------------------------------------\r\n  db.prepare(upsertFileFtsTemplate).run({\r\n    path: normalizedPath,\r\n    filename,\r\n    summary,\r\n    contentText,\r\n  });\r\n\r\n  // ----------------------------------------------\r\n  // Mark as indexed\r\n  // ----------------------------------------------\r\n  db.prepare(markFileAsIndexed).run({ path: normalizedPath });\r\n}\r\n\r\n// --------------------------------------------------\r\n// FTS REBUILD\r\n// --------------------------------------------------\r\nfunction rebuildFts() {\r\n  const db = getDbForRepo();\r\n  log('🔍 Rebuilding FTS index...');\r\n  db.exec(`INSERT INTO files_fts(files_fts) VALUES('rebuild');`);\r\n}\r\n\r\n// --------------------------------------------------\r\n// INDEXING BATCH\r\n// --------------------------------------------------\r\nexport async function runIndexingBatch(): Promise<boolean> {\r\n  log('⚡ Starting indexing batch...');\r\n\r\n  const db = getDbForRepo();\r\n  const BATCH_SIZE = 25; // adjust as needed\r\n  const rows = db.prepare(selectUnprocessedFiles).all(BATCH_SIZE) as Array<{ path: string }>;\r\n\r\n  if (rows.length === 0) {\r\n    log('✅ No files left to index.');\r\n    return false;\r\n  }\r\n\r\n  const release = await lockDbWithRetry();\r\n  let didIndexWork = false;\r\n\r\n  log('Release: ', release);\r\n\r\n  try {\r\n    for (const row of rows) {\r\n      log(`📄 Indexing: ${row.path}`);\r\n\r\n      try {\r\n        indexFile(row.path, null, 'auto');\r\n        didIndexWork = true;\r\n      } catch (err) {\r\n        log(`⚠️ Failed indexing ${row.path}`, err);\r\n        db.prepare(markFileAsSkippedByPath).run({ path: row.path });\r\n      }\r\n    }\r\n\r\n    try {\r\n      rebuildFts();\r\n    } catch (err) {\r\n      log('⚠️ Failed FTS rebuild:', err);\r\n    }\r\n\r\n    const remaining = db.prepare(countUnprocessedFiles).get() as { count: number };\r\n    log(`📦 Remaining unindexed files: ${remaining.count}`);\r\n\r\n    return didIndexWork;\r\n  } finally {\r\n    if (release) {\r\n      await release();\r\n      log('🔓 DB lock released');\r\n    } else {\r\n      log('⚠️ DB lock was not acquired, nothing to release');\r\n    }\r\n  }\r\n}\r\n"]}

package/dist/daemon/runKgBatch.js

@@ -1,4 +1,11 @@
-// File: src/daemon/runKgBatch.ts
+/**
+ * Runs the legacy KG batch over queued files outside the default live runtime.
+ *
+ * Why this file exists:
+ * - older KG enrichment and extractor code still lives in the repo for possible later reuse
+ * - the default indexing path no longer calls this batch
+ * - new-agent grounding should not depend on KG output
+ */
 import fs from 'fs/promises';
 import fsSync from 'fs';
 import path from 'path';
@@ -102,3 +109,4 @@ export async function runKgBatch() {
         }
     }
 }
+//# sourceMappingURL=runKgBatch.js.map

package/dist/daemon/runKgBatch.js.map

@@ -0,0 +1 @@
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// import the template\nimport { indexCodeForFile } from '../db/functionIndex.js';\n\nconst MAX_KG_FILES_PER_BATCH = 3;\n\nexport async function runKgBatch(): Promise<void> {\n    const db = getDbForRepo();\n\n    const rows = db.prepare(`\n    SELECT id, path, summary\n    FROM files\n    WHERE functions_extracted_at IS NULL\n      AND processing_status NOT IN ('skipped', 'failed', 'kg_done')\n    LIMIT ?\n  `).all(MAX_KG_FILES_PER_BATCH) as Array<{ id: number; path: string; summary: string | null }>;\n\n    if (rows.length === 0) {\n        log('🧠 KG batch: no pending files');\n        return;\n    }\n\n    for (const row of rows) {\n        log(`\\n🔗 KG: Processing ${row.path}`);\n\n        if (!fsSync.existsSync(row.path)) {\n            log('⚠️ KG skipped: file missing');\n            db.prepare(sqlTemplates.markFileAsKgDone).run({ path: row.path });\n            continue;\n        }\n\n        // --- CODE EXTRACTION SECTION ---\n        log('\\n');\n        log('📄 Code Extraction');\n        log('--------------------------------------------------------------------');\n\n        try {\n            const success = await indexCodeForFile(row.path, row.id);\n            if (success) {\n                log('✅ Indexed code');\n            } else {\n                log('⚡ No code elements extracted or unsupported file type');\n            }\n        } catch (err) {\n            log(`❌ Code extraction failed for ${row.path}:`, err);\n        }\n\n        // --- KNOWLEDGE GRAPH SECTION ---\n        log('\\n');\n        log('🔗 Knowledge Graph');\n        log('--------------------------------------------------------------------');\n\n        const ext = path.extname(row.path).toLowerCase();\n        if (KG_IGNORED_EXTENSIONS.includes(ext)) {\n            log(`⚠️ KG skipped (ignored extension): ${ext}`);\n            db.prepare(sqlTemplates.markFileAsKgDone).run({ path: row.path });\n\n            continue;\n        }\n\n        try {\n            const content = await fs.readFile(row.path, 'utf-8');\n\n            const kgInput: KnowledgeGraphInput = {\n                fileId: row.id,\n                filepath: row.path,\n                summary: row.summary || undefined,\n            };\n\n            const kgResult: KnowledgeGraph = await kgModule.run(kgInput, content);\n\n            log(`✅ KG built: ${kgResult.entities.length} entities, ${kgResult.edges.length} edges`);\n\n            if (kgResult.entities.length > 0) {\n                const insertTag = db.prepare(insertGraphTagTemplate);\n                const getTagId = db.prepare(selectGraphTagIdTemplate);\n                const insertEntityTag = db.prepare(insertGraphEntityTagTemplate);\n\n                for (const entity of kgResult.entities) {\n                    if (!entity.type || !Array.isArray(entity.tags)) continue;\n\n                    for (const tag of entity.tags) {\n                        if (!tag) continue;\n\n                        try {\n                            insertTag.run({ name: tag });\n                            const tagRow = getTagId.get({ name: tag }) as { id: number } | undefined;\n                            if (!tagRow) continue;\n\n                            insertEntityTag.run({\n                                entity_type: entity.type,\n                                entity_unique_id: `${entity.name}@${row.path}`,\n                                tag_id: tagRow.id,\n                            });\n                        } catch {\n                            // ignore per-entity failures\n                        }\n                    }\n                }\n            }\n\n            // ✅ Mark KG as done for this file\n            db.prepare(sqlTemplates.markFileAsKgDone).run({ path: row.path });\n\n\n        } catch (err) {\n            log(`❌ KG failed for ${row.path}:`, err);\n\n            // Still mark as done to avoid infinite retries\n            db.prepare(sqlTemplates.markFileAsKgDone).run({ path: row.path });\n        }\n    }\n}\n"]}

package/dist/db/backup.js

@@ -38,3 +38,4 @@ function copyRecursiveSync(src, dest) {
         fs.copyFileSync(src, dest);
     }
 }
+//# sourceMappingURL=backup.js.map

package/dist/db/backup.js.map

@@ -0,0 +1 @@
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package/dist/db/client.js

@@ -1,11 +1,25 @@
+/**
+ * Resolves repo-scoped SQLite paths and connections for the CLI runtime.
+ *
+ * Why this file exists:
+ * - active-repo commands still need one simple DB entrypoint
+ * - read-only helpers sometimes need a repo DB path without mutating state
+ * - DB connection setup should stay consistent across commands
+ */
 import fs from 'fs';
 import path from 'path';
 import { SCAI_HOME } from '../constants.js';
 import { readConfig } from '../config.js';
 import Database from 'better-sqlite3';
 /**
- * Returns a per-repo SQLite database instance.
- * Ensures the directory and file are created.
+ * Builds the SQLite path for one registered repo key.
+ * Example: "repo-a" -> "~/.scai/repos/repo-a/db.sqlite".
+ */
+export function getDbPathForRepoKey(repoKey) {
+    return path.join(SCAI_HOME, 'repos', repoKey, 'db.sqlite');
+}
+/**
+ * Returns the SQLite path for the current active repo.
  */
 export function getDbPathForRepo() {
     const cfg = readConfig();
@@ -13,7 +27,7 @@ export function getDbPathForRepo() {
     if (!repoKey) {
         throw new Error('No active repo set. Please set an index directory first.');
     }
-    return path.join(SCAI_HOME, 'repos', repoKey, 'db.sqlite');
+    return getDbPathForRepoKey(repoKey);
 }
 export function getDbForRepo() {
     const dbPath = getDbPathForRepo();
@@ -22,3 +36,4 @@ export function getDbForRepo() {
     db.pragma('journal_mode = WAL');
     return db;
 }
+//# sourceMappingURL=client.js.map

package/dist/db/client.js.map

@@ -0,0 +1 @@
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package/dist/db/fileIndex.js

@@ -1,22 +1,21 @@
-// indexCmd.ts
-import fg from 'fast-glob';
+/**
+ * Owns indexed file discovery and DB-backed search primitives for the CLI.
+ *
+ * Why this file exists:
+ * - FTS-backed search primitives need one place that talks to SQLite
+ * - search orchestration should call small helpers here instead of mixing DB policy everywhere
+ * - public reindex setup now lives in `setup/reindexOwner.ts`, so this file stays at the primitive layer
+ */
 import path from 'path';
-import lockfile from 'proper-lockfile';
-import { initSchema } from '../db/schema.js';
-import { getDbForRepo, getDbPathForRepo } from '../db/client.js';
-import { upsertFileTemplate } from '../db/sqlTemplates.js';
-import { detectFileType } from '../fileRules/detectFileType.js';
-import { classifyFile } from '../fileRules/classifyFile.js';
-import { IGNORED_FOLDER_GLOBS } from '../fileRules/ignoredPaths.js';
-import { Config } from '../config.js';
-import { log } from '../utils/log.js';
-import { startDaemon } from '../commands/DaemonCmd.js';
+import { getDbForRepo } from '../db/client.js';
 import * as sqlTemplates from '../db/sqlTemplates.js';
 import { RELATED_FILES_LIMIT } from '../constants.js';
 import { generate } from '../lib/generate.js';
+import { log } from '../utils/log.js';
 import { logInputOutput } from '../utils/promptLogHelper.js';
 import { compileSearchQuery } from '../utils/compileSearchQuery.js';
 import { extractTaggedContent } from '../utils/parseTaggedContent.js';
+import { STOP_WORDS } from "../fileRules/stopWords.js";
 const QUERY_OPERATOR_TOKENS = new Set(["or", "and", "not", "near"]);
 const GENERIC_FTS_TERMS = new Set([
     "file",
@@ -33,76 +32,8 @@ const GENERIC_FTS_TERMS = new Set([
 ]);
 const MAX_PRIMARY_TERMS = 12;
 const MAX_FALLBACK_TERMS = 10;
-/* -------------------------------------------------- */
-/* DB LOCK                                             */
-/* -------------------------------------------------- */
-async function lockDb() {
-    try {
-        return await lockfile.lock(getDbPathForRepo());
-    }
-    catch (err) {
-        log('❌ Failed to acquire DB lock: ' + err);
-        throw err;
-    }
-}
-/* -------------------------------------------------- */
-/* INDEX COMMAND                                       */
-/* -------------------------------------------------- */
-export async function runIndexCommand() {
-    try {
-        initSchema();
-    }
-    catch (err) {
-        console.error('❌ Failed to initialize schema:', err);
-        process.exit(1);
-    }
-    const indexDir = Config.getIndexDir() || process.cwd();
-    Config.setIndexDir(indexDir);
-    log(`📂 Scanning files in: ${indexDir}`);
-    const files = await fg('**/*.*', {
-        cwd: indexDir,
-        ignore: IGNORED_FOLDER_GLOBS,
-        absolute: true,
-    });
-    const db = getDbForRepo();
-    const release = await lockDb();
-    const countByExt = {};
-    let count = 0;
-    try {
-        for (const file of files) {
-            const classification = classifyFile(file);
-            if (classification !== 'valid') {
-                log(`⏭️ Skipping (${classification}): ${file}`);
-                continue;
-            }
-            try {
-                const type = detectFileType(file);
-                const normalizedPath = path.normalize(file).replace(/\\/g, '/');
-                const filename = path.basename(normalizedPath);
-                db.prepare(upsertFileTemplate).run({
-                    path: normalizedPath,
-                    filename,
-                    summary: null,
-                    type,
-                    lastModified: null,
-                    indexedAt: null,
-                });
-                const ext = path.extname(file);
-                countByExt[ext] = (countByExt[ext] || 0) + 1;
-                count++;
-            }
-            catch (err) {
-                log(`⚠️ Skipped in indexCmd ${file}: ${String(err)}`);
-            }
-        }
-    }
-    finally {
-        await release();
-    }
-    log('📊 Discovered files by extension:', JSON.stringify(countByExt, null, 2));
-    log(`✅ Done. Enqueued ${count} files for indexing.`);
-    startDaemon();
-}
+const MIN_PATTERN_SYMBOL_LEN = 4;
+const MAX_PATTERN_SYMBOL_ROWS = Math.max(8, Math.floor(RELATED_FILES_LIMIT / 2));
 /* -------------------------------------------------- */
 /* QUERY API                                           */
 /* -------------------------------------------------- */
@@ -118,61 +49,8 @@ export function queryFiles(safeQuery, limit = 10) {
 export async function semanticSearchFiles(originalQuery, topK = 5, intent = {}) {
     const db = getDbForRepo();
     const summarizeRows = (rows) => rows.map((r) => `${r.filename} | bm25Score=${r.bm25Score}`);
-    const targetFiles = Array.isArray(intent.targetFiles)
-        ? dedupeNormalizedStrings(intent.targetFiles)
-        : [];
-    const targetSymbols = Array.isArray(intent.targetSymbols)
-        ? dedupeNormalizedStrings(intent.targetSymbols)
-        : [];
-    // 1) Target-first path.
-    // Example: targetFiles=["semanticAnalysisModule.ts","typescript.ts"] -> return only those
-    // resolved rows and skip broad FTS expansion.
-    if (targetFiles.length > 0 || targetSymbols.length > 0) {
-        // Deterministic resolution order:
-        // 1) files by explicit path/name 2) files by exact symbol ownership.
-        // Example: targetFiles=["fileIndex.ts"], targetSymbols=["semanticSearchFiles"].
-        const { resolvedRows: fileRows, unresolvedTargets } = resolveTargetRows(db, targetFiles);
-        const exactSymbolRows = resolveSymbolRows(db, targetSymbols);
-        const patternSymbolRows = targetSymbols.length > 0 && exactSymbolRows.length === 0
-            ? resolveSymbolRowsByPattern(db, targetSymbols)
-            : [];
-        const symbolRows = mergeRows(exactSymbolRows, patternSymbolRows);
-        const resolvedRows = mergeRows(fileRows, symbolRows);
-        const queryExpansionTerms = buildQueryExpansionTerms(originalQuery, [
-            ...targetFiles.map((target) => `"${path.basename(target)}"`),
-            ...targetSymbols.flatMap((symbol) => buildSymbolSearchForms(symbol)
-                .map((form) => normalizeFtsTerm(form))
-                .filter(Boolean)
-                .map((form) => `${form}*`))
-        ]);
-        logInputOutput("semanticSearchFiles target resolution", "output", {
-            originalQuery,
-            intent,
-            targetFiles,
-            targetSymbols,
-            resolvedCount: resolvedRows.length,
-            fileResolvedCount: fileRows.length,
-            symbolResolvedCount: symbolRows.length,
-            symbolResolvedExactCount: exactSymbolRows.length,
-            symbolResolvedPatternCount: patternSymbolRows.length,
-            unresolvedTargets,
-            resolvedFiles: resolvedRows.map((row) => row.path),
-        });
-        // Target-first short-circuit: if we resolved any explicit targets, keep scope tight.
-        if (resolvedRows.length > 0) {
-            return resolvedRows.slice(0, topK).map((r) => ({
-                id: r.id,
-                path: r.path,
-                filename: r.filename,
-                summary: r.summary,
-                type: r.type,
-                lastModified: r.lastModified,
-                bm25Score: r.bm25Score,
-                queryExpansionTerms,
-            }));
-        }
-    }
-    // 2) Broad search path (fallback when target resolution failed).
+    // Broad semantic search stays separate from exact target resolution.
+    // Example query: "add comments in parser module" -> model emits OR-joined FTS terms.
     // Example query: "add comments in parser module" -> model emits OR-joined FTS terms.
     const primaryFtsQuery = await generatePrimaryFtsQuery(originalQuery, intent);
     const primaryExpansionTerms = buildQueryExpansionTerms(originalQuery, [primaryFtsQuery]);
@@ -220,7 +98,7 @@ export async function semanticSearchFiles(originalQuery, topK = 5, intent = {})
     }
     return [];
 }
-function resolveTargetRows(db, targetFiles) {
+export function resolveTargetRows(db, targetFiles) {
     const resolvedRows = [];
     const unresolvedTargets = [];
     const seenPaths = new Set();
@@ -328,7 +206,7 @@ function buildSymbolSearchForms(rawSymbol) {
     }
     return dedupeNormalizedStrings(forms);
 }
-function resolveSymbolRows(db, targetSymbols) {
+export function resolveSymbolRows(db, targetSymbols) {
     if (targetSymbols.length === 0)
         return [];
     const rows = [];
@@ -426,7 +304,9 @@ function resolveSymbolRows(db, targetSymbols) {
     }
     return rows;
 }
-function resolveSymbolRowsByPattern(db, targetSymbols) {
+export function resolveSymbolRowsByPattern(db, targetSymbols) {
+    // Broad fallback for symbol lookup when exact resolution fails.
+    // Guarded to avoid noisy matches from weak tokens (e.g. "Can" or tiny fragments).
     if (targetSymbols.length === 0)
         return [];
     const rows = [];
@@ -434,11 +314,13 @@ function resolveSymbolRowsByPattern(db, targetSymbols) {
     const candidatePatterns = new Set();
     const candidateParts = new Set();
     for (const rawSymbol of targetSymbols) {
+        if (!isEligiblePatternSymbol(rawSymbol))
+            continue;
         for (const pattern of buildSymbolLikePatterns(rawSymbol)) {
             candidatePatterns.add(pattern);
         }
         for (const part of splitSymbolParts(rawSymbol)) {
-            if (part.length >= 3)
+            if (part.length >= MIN_PATTERN_SYMBOL_LEN)
                 candidateParts.add(part);
         }
     }
@@ -486,7 +368,7 @@ function resolveSymbolRowsByPattern(db, targetSymbols) {
   `);
     for (const pattern of candidatePatterns) {
         const likePattern = `%${escapeSqlLikeTerm(pattern)}%`;
-        const matches = patternStmt.all(likePattern, likePattern, likePattern, likePattern, likePattern, likePattern, RELATED_FILES_LIMIT);
+        const matches = patternStmt.all(likePattern, likePattern, likePattern, likePattern, likePattern, likePattern, MAX_PATTERN_SYMBOL_ROWS);
         for (const row of matches) {
             if (seenPaths.has(row.path))
                 continue;
@@ -496,7 +378,7 @@ function resolveSymbolRowsByPattern(db, targetSymbols) {
     }
     for (const part of candidateParts) {
         const likePattern = `%${escapeSqlLikeTerm(part)}%`;
-        const matches = partStmt.all(likePattern, likePattern, likePattern, RELATED_FILES_LIMIT);
+        const matches = partStmt.all(likePattern, likePattern, likePattern, MAX_PATTERN_SYMBOL_ROWS);
         for (const row of matches) {
             if (seenPaths.has(row.path))
                 continue;
@@ -504,7 +386,7 @@ function resolveSymbolRowsByPattern(db, targetSymbols) {
             rows.push(row);
         }
     }
-    return rows.slice(0, RELATED_FILES_LIMIT);
+    return rows.slice(0, MAX_PATTERN_SYMBOL_ROWS);
 }
 function splitSymbolParts(rawSymbol) {
     const symbol = String(rawSymbol ?? "").trim();
@@ -524,14 +406,53 @@ function buildSymbolLikePatterns(rawSymbol) {
     const patterns = new Set();
     const compact = normalizeSymbolLookupToken(symbol);
     const parts = splitSymbolParts(symbol);
-    if (compact)
+    if (compact.length >= MIN_PATTERN_SYMBOL_LEN)
         patterns.add(compact);
     if (parts.length > 0) {
-        patterns.add(parts.join(""));
-        patterns.add(parts.join("%"));
+        const compactParts = parts.join("");
+        if (compactParts.length >= MIN_PATTERN_SYMBOL_LEN)
+            patterns.add(compactParts);
+        if (parts.length >= 2)
+            patterns.add(parts.join("%"));
     }
     return Array.from(patterns);
 }
+function isEligiblePatternSymbol(rawSymbol) {
+    // Allows broad pattern matching only for identifier-like tokens.
+    // Example: "CanvasManager" -> true, "can" -> false.
+    const symbol = String(rawSymbol ?? "").trim();
+    if (!symbol || symbol.length < MIN_PATTERN_SYMBOL_LEN)
+        return false;
+    const lowered = symbol.toLowerCase();
+    if (STOP_WORDS.has(lowered) || QUERY_OPERATOR_TOKENS.has(lowered))
+        return false;
+    const looksLikeIdentifier = /[a-z][A-Z]/.test(symbol) ||
+        /[A-Z]{2,}[a-z]/.test(symbol) ||
+        symbol.includes("_") ||
+        /[0-9]/.test(symbol) ||
+        /(step|module|cmd|service|controller|handler|manager)$/i.test(symbol);
+    if (!looksLikeIdentifier && /^[a-z]+$/.test(symbol) && symbol.length < 8)
+        return false;
+    return true;
+}
+function isLikelyTargetSymbol(rawSymbol) {
+    // Pre-filter targetSymbols before any symbol resolution.
+    // Example: "ChangeLogUpdateCmd" -> true, "What" -> false.
+    const symbol = String(rawSymbol ?? "").trim();
+    if (!symbol || symbol.length < 3)
+        return false;
+    const lowered = symbol.toLowerCase();
+    if (STOP_WORDS.has(lowered) || QUERY_OPERATOR_TOKENS.has(lowered))
+        return false;
+    const looksLikeIdentifier = /[a-z][A-Z]/.test(symbol) ||
+        /[A-Z]{2,}[a-z]/.test(symbol) ||
+        symbol.includes("_") ||
+        /[0-9]/.test(symbol) ||
+        /(step|module|cmd|service|controller|handler|manager)$/i.test(symbol);
+    if (!looksLikeIdentifier && /^[A-Z][a-z]+$/.test(symbol))
+        return false;
+    return true;
+}
 function escapeSqlLikeTerm(value) {
     return String(value ?? "").replace(/[%_]/g, "");
 }
@@ -588,10 +509,22 @@ term1 OR term2 OR term3
     // Model-generated query is always normalized by enforceFtsQueryPolicy.
     // Example: "code* OR file*" + target file -> keeps anchored file term first.
     try {
-        const response = await generate({ content: prompt, query: "" });
+        const response = await generate({ content: prompt, query: "" }, {
+            caller: "fileIndex.generatePrimaryFtsQuery",
+            inputContext: {
+                userQuery,
+                intent,
+            },
+        });
         const rawText = String(response.data ?? "");
         const { content } = extractTaggedContent(rawText, "FILE_CONTENT");
-        return enforceFtsQueryPolicy(userQuery, content, MAX_PRIMARY_TERMS, intent);
+        const normalized = enforceFtsQueryPolicy(userQuery, content, MAX_PRIMARY_TERMS, intent);
+        logInputOutput("fileIndex.generatePrimaryFtsQuery", "output", {
+            callId: response.trace?.callId,
+            userQuery,
+            normalizedQuery: normalized,
+        });
+        return normalized;
     }
     catch (err) {
         return enforceFtsQueryPolicy(userQuery, userQuery, MAX_PRIMARY_TERMS, intent);
@@ -632,7 +565,14 @@ query5
 </FILE_CONTENT>
 `.trim();
     try {
-        const response = await generate({ content: prompt, query: "" });
+        const response = await generate({ content: prompt, query: "" }, {
+            caller: "fileIndex.generateFallbackFtsQueries",
+            inputContext: {
+                userQuery,
+                failedQuery,
+                intent,
+            },
+        });
         const rawText = String(response.data ?? "");
         const { content } = extractTaggedContent(rawText, "FILE_CONTENT");
         // Each candidate fallback line is sanitized/anchored the same way as primary.
@@ -644,6 +584,12 @@ query5
         if (!subQueries.length) {
             throw new Error("No fallback subqueries generated");
         }
+        logInputOutput("fileIndex.generateFallbackFtsQueries", "output", {
+            callId: response.trace?.callId,
+            userQuery,
+            failedQuery,
+            subQueries,
+        });
         return subQueries;
     }
     catch (err) {
@@ -859,12 +805,24 @@ Question:
 "${query}"
 `.trim();
     try {
-        const response = await generate({ content: prompt, query: "" });
+        const response = await generate({ content: prompt, query: "" }, {
+            caller: "fileIndex.expandQueryWithModel",
+            inputContext: {
+                query,
+            },
+        });
         const rawText = String(response.data ?? "");
         const { content } = extractTaggedContent(rawText, "FILE_CONTENT");
-        return compileSearchQuery({ query: content, mode: "fts" }).fts.expression;
+        const expanded = compileSearchQuery({ query: content, mode: "fts" }).fts.expression;
+        logInputOutput("fileIndex.expandQueryWithModel", "output", {
+            callId: response.trace?.callId,
+            query,
+            expandedQuery: expanded,
+        });
+        return expanded;
     }
     catch {
         return null;
     }
 }
+//# sourceMappingURL=fileIndex.js.map