react-msaview 8.4.1 → 9.1.0

package/dist/components/msa/drawFeatureSpans.d.ts

@@ -31,19 +31,11 @@ export interface SpanLayout {
      */
     headRise?: (height: number) => number;
 }
-/** the rows of `bandsByRow` that `leaves` covers, in display order */
-export declare function spanRows<T extends SpanBand>(leaves: HierarchyNode<NodeWithIdsAndLength>[], bandsByRow: Map<string, T[]>): SpanRow<T>[];
 /**
- * The span mark, in whatever x space the caller maps its bands into: alignment
- * columns for the domain overlay, panel pixels for a `features` row panel. A
- * feature with a strand draws as an arrow, one without as a box, and a label
- * draws inside the span wherever the text fits.
- *
- * `xOf` returns the span's `[xStart, xEnd]` in the context's coordinates, and
- * the context is translated so that `y - rowHeight` is the row's top edge.
+ * What a renderer hands the span mark: its rows, where a band lands in them,
+ * its x mapping, the colors and the label each feature takes.
  */
-export declare function drawFeatureSpans<T extends SpanBand>({ ctx, rows, layout, xOf, colors, labelOf, labelDrawn, contrastText, xMin, xMax, }: {
-    ctx: RenderCtx;
+export interface SpanSource<T extends SpanBand> {
     rows: SpanRow<T>[];
     layout: SpanLayout;
     xOf: (band: T) => [number, number];
@@ -53,6 +45,53 @@ export declare function drawFeatureSpans<T extends SpanBand>({ ctx, rows, layout
     }>;
     labelOf?: (band: T) => string | undefined;
     labelDrawn?: (band: T) => void;
+}
+/** a span as drawn: a box, or an arrow's outline where it carries a strand */
+export interface SpanShape<T extends SpanBand> {
+    band: T;
+    fill: string;
+    stroke: string;
+    box?: {
+        x: number;
+        y: number;
+        w: number;
+        h: number;
+    };
+    outline?: [number, number][];
+}
+export interface SpanLabel {
+    text: string;
+    x: number;
+    y: number;
+    fill: string;
+}
+/** one row's shapes, then the labels drawn over them at `fontSize` */
+export interface SpanMarkRow<T extends SpanBand> {
+    shapes: SpanShape<T>[];
+    labels: SpanLabel[];
+    fontSize: number;
+}
+/** the rows of `bandsByRow` that `leaves` covers, in display order */
+export declare function spanRows<T extends SpanBand>(leaves: HierarchyNode<NodeWithIdsAndLength>[], bandsByRow: Map<string, T[]>): SpanRow<T>[];
+/**
+ * The span mark as geometry, in whatever x space `xOf` maps its bands into:
+ * alignment columns for the domain overlay, panel pixels for a `features` row
+ * panel. A feature with a strand is an arrow, one without a box, and a label
+ * lands inside the span wherever `measureText` says the text fits.
+ *
+ * `y - rowHeight` is the row's top edge in the coordinates `rows` gives.
+ */
+export declare function featureSpanMarks<T extends SpanBand>({ rows, layout, xOf, colors, labelOf, labelDrawn, measureText, xMin, xMax, }: SpanSource<T> & {
+    measureText: (text: string, fontSize: number) => number;
+    xMin: number;
+    xMax: number;
+}): SpanMarkRow<T>[];
+/**
+ * The span mark, drawn into `ctx` from `featureSpanMarks`, with the context
+ * translated so that `y - rowHeight` is the row's top edge.
+ */
+export declare function drawFeatureSpans<T extends SpanBand>({ ctx, contrastText, ...source }: SpanSource<T> & {
+    ctx: RenderCtx;
     contrastText: (color: string) => string;
     xMin: number;
     xMax: number;

package/dist/components/msa/drawFeatureSpans.js

@@ -11,26 +11,28 @@ export function spanRows(leaves, bandsByRow) {
     return rows;
 }
 /**
- * The span mark, in whatever x space the caller maps its bands into: alignment
- * columns for the domain overlay, panel pixels for a `features` row panel. A
- * feature with a strand draws as an arrow, one without as a box, and a label
- * draws inside the span wherever the text fits.
+ * The span mark as geometry, in whatever x space `xOf` maps its bands into:
+ * alignment columns for the domain overlay, panel pixels for a `features` row
+ * panel. A feature with a strand is an arrow, one without a box, and a label
+ * lands inside the span wherever `measureText` says the text fits.
  *
- * `xOf` returns the span's `[xStart, xEnd]` in the context's coordinates, and
- * the context is translated so that `y - rowHeight` is the row's top edge.
+ * `y - rowHeight` is the row's top edge in the coordinates `rows` gives.
  */
-export function drawFeatureSpans({ ctx, rows, layout, xOf, colors, labelOf, labelDrawn, contrastText, xMin, xMax, }) {
-    // one row's spans are drawn before any of its labels. Bands are ordered
-    // longest-first so a nested one lands on top, and drawing each label with its
-    // own span put the child's box over the parent's text: `S` covered `RBD`, and
-    // `RBD` read as `RB`. Reused across rows rather than allocated per row.
-    const placed = [];
+export function featureSpanMarks({ rows, layout, xOf, colors, labelOf, labelDrawn, measureText, xMin, xMax, }) {
+    const out = [];
     for (const { y, bands } of rows) {
         const h = layout.height(bands[0].laneCount);
         const headLen = layout.headLength(h);
         const rise = layout.headRise?.(h) ?? 0;
         const labelled = labelOf !== undefined && h >= minFeatureLabelHeight;
-        placed.length = 0;
+        const fontSize = Math.min(h - 2, 11);
+        const shapes = [];
+        const labels = [];
+        // one row's spans are drawn before any of its labels. Bands are ordered
+        // longest-first so a nested one lands on top, and drawing each label with
+        // its own span put the child's box over the parent's text: `S` covered
+        // `RBD`, and `RBD` read as `RB`.
+        const placed = [];
         for (const band of bands) {
             const [xStart, xEnd] = xOf(band);
             const w = xEnd - xStart;
@@ -39,75 +41,116 @@ export function drawFeatureSpans({ ctx, rows, layout, xOf, colors, labelOf, labe
             }
             const t = layout.top(y, band.lane, h);
             const { fill, stroke } = colors.get(band.annotation);
-            ctx.fillStyle = fill;
-            ctx.strokeStyle = stroke;
             const { strand } = band.annotation;
             const head = strand === undefined ? 0 : Math.min(headLen, w);
-            if (strand === undefined) {
-                ctx.fillRect(xStart, t, w, h);
-                ctx.strokeRect(xStart, t, w, h);
-            }
-            else {
-                drawGeneArrow({ ctx, x: xStart, t, w, h, head, rise, strand });
-            }
+            shapes.push(strand === undefined
+                ? { band, fill, stroke, box: { x: xStart, y: t, w, h } }
+                : {
+                    band,
+                    fill,
+                    stroke,
+                    outline: geneArrow({ x: xStart, t, w, h, head, rise, strand }),
+                });
             if (labelled) {
                 placed.push({ band, xStart, w, t, head, fill });
             }
         }
-        if (placed.length > 0) {
-            ctx.font = `${Math.min(h - 2, 11)}px sans-serif`;
+        for (const { band, xStart, w, t, head, fill } of placed) {
+            // asking for the label here rather than in the pass above keeps the
+            // once-per-block segment numbering in drawing order
+            const text = labelOf(band);
+            // the head narrows to a point, so only about half of it holds text
+            if (text !== undefined &&
+                measureText(text, fontSize) + 2 <= w - head / 2) {
+                labelDrawn?.(band);
+                labels.push({ text, x: xStart + w / 2, y: t + h / 2, fill });
+            }
+        }
+        out.push({ shapes, labels, fontSize });
+    }
+    return out;
+}
+/**
+ * The span mark, drawn into `ctx` from `featureSpanMarks`, with the context
+ * translated so that `y - rowHeight` is the row's top edge.
+ */
+export function drawFeatureSpans({ ctx, contrastText, ...source }) {
+    let font = '';
+    const setFont = (fontSize) => {
+        const next = `${fontSize}px sans-serif`;
+        if (next !== font) {
+            ctx.font = next;
+            font = next;
+        }
+    };
+    const rows = featureSpanMarks({
+        ...source,
+        measureText: (text, fontSize) => {
+            setFont(fontSize);
+            return ctx.measureText(text).width;
+        },
+    });
+    for (const { shapes, labels, fontSize } of rows) {
+        for (const { fill, stroke, box, outline } of shapes) {
+            ctx.fillStyle = fill;
+            ctx.strokeStyle = stroke;
+            if (box) {
+                ctx.fillRect(box.x, box.y, box.w, box.h);
+                ctx.strokeRect(box.x, box.y, box.w, box.h);
+            }
+            else if (outline) {
+                ctx.beginPath();
+                ctx.moveTo(...outline[0]);
+                for (let i = 1; i < outline.length; i++) {
+                    ctx.lineTo(...outline[i]);
+                }
+                ctx.closePath();
+                ctx.fill();
+                ctx.stroke();
+            }
+        }
+        if (labels.length > 0) {
+            setFont(fontSize);
             ctx.textAlign = 'center';
             ctx.textBaseline = 'middle';
-            for (const { band, xStart, w, t, head, fill } of placed) {
-                // asking for the label here rather than in the pass above keeps the
-                // once-per-block segment numbering in drawing order
-                const label = labelOf(band);
-                // the head narrows to a point, so only about half of it holds text
-                if (label !== undefined &&
-                    ctx.measureText(label).width + 2 <= w - head / 2) {
-                    labelDrawn?.(band);
-                    ctx.fillStyle = contrastText(fill);
-                    ctx.fillText(label, xStart + w / 2, t + h / 2);
-                }
+            for (const { text, x, y, fill } of labels) {
+                ctx.fillStyle = contrastText(fill);
+                ctx.fillText(text, x, y);
             }
         }
     }
 }
 /**
- * A gene arrow, drawn the way gggenes and gggenomes draw one: the head is the
- * last `head` pixels *of* the feature, tapering to a point at its end, and a
- * feature shorter than the head is all head. The glyph therefore covers its
+ * A gene arrow's outline, the way gggenes and gggenomes draw one: the head is
+ * the last `head` pixels *of* the feature, tapering to a point at its end, and
+ * a feature shorter than the head is all head. The glyph therefore covers its
  * start..end span and nothing else, so adjacent genes butt together instead of
  * biting triangles out of each other, a neighbour never draws over a label, and
  * a gene 20 columns wide reads as 20 columns wide.
  *
  * `rise` lifts the head above the band, for a bar too thin to taper.
  */
-function drawGeneArrow({ ctx, x, t, w, h, head, rise, strand, }) {
+function geneArrow({ x, t, w, h, head, rise, strand, }) {
     const tip = strand > 0 ? x + w : x;
     const tail = strand > 0 ? x : x + w;
     const flange = strand > 0 ? tip - head : tip + head;
     const bottom = t + h;
     const crown = t - rise;
     const point = (crown + bottom) / 2;
-    ctx.beginPath();
     if (head >= w) {
-        ctx.moveTo(tail, crown);
-        ctx.lineTo(tip, point);
-        ctx.lineTo(tail, bottom);
-    }
-    else {
-        ctx.moveTo(tail, t);
-        ctx.lineTo(flange, t);
-        if (rise > 0) {
-            ctx.lineTo(flange, crown);
-        }
-        ctx.lineTo(tip, point);
-        ctx.lineTo(flange, bottom);
-        ctx.lineTo(tail, bottom);
+        return [
+            [tail, crown],
+            [tip, point],
+            [tail, bottom],
+        ];
     }
-    ctx.closePath();
-    ctx.fill();
-    ctx.stroke();
+    return [
+        [tail, t],
+        [flange, t],
+        ...(rise > 0 ? [[flange, crown]] : []),
+        [tip, point],
+        [flange, bottom],
+        [tail, bottom],
+    ];
 }
 //# sourceMappingURL=drawFeatureSpans.js.map

package/dist/components/msa/drawFeatureSpans.js.map

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+{"version":3,"file":"drawFeatureSpans.js","sourceRoot":"","sources":["../../../src/components/msa/drawFeatureSpans.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAA;AA2E1D,sEAAsE;AACtE,MAAM,UAAU,QAAQ,CACtB,MAA6C,EAC7C,UAA4B;IAE5B,MAAM,IAAI,GAAiB,EAAE,CAAA;IAC7B,KAAK,MAAM,IAAI,IAAI,MAAM,EAAE,CAAC;QAC1B,MAAM,KAAK,GAAG,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAC5C,IAAI,KAAK,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC9B,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,IAAI,CAAC,CAAE,EAAE,KAAK,EAAE,CAAC,CAAA;QAClC,CAAC;IACH,CAAC;IACD,OAAO,IAAI,CAAA;AACb,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,gBAAgB,CAAqB,EACnD,IAAI,EACJ,MAAM,EACN,GAAG,EACH,MAAM,EACN,OAAO,EACP,UAAU,EACV,WAAW,EACX,IAAI,EACJ,IAAI,GAKL;IACC,MAAM,GAAG,GAAqB,EAAE,CAAA;IAChC,KAAK,MAAM,EAAE,CAAC,EAAE,KAAK,EAAE,IAAI,IAAI,EAAE,CAAC;QAChC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAE,CAAC,SAAS,CAAC,CAAA;QAC5C,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;QACpC,MAAM,IAAI,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACtC,MAAM,QAAQ,GAAG,OAAO,KAAK,SAAS,IAAI,CAAC,IAAI,qBAAqB,CAAA;QACpE,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAA;QACpC,MAAM,MAAM,GAAmB,EAAE,CAAA;QACjC,MAAM,MAAM,GAAgB,EAAE,CAAA;QAC9B,wEAAwE;QACxE,0EAA0E;QAC1E,uEAAuE;QACvE,iCAAiC;QACjC,MAAM,MAAM,GAON,EAAE,CAAA;QAER,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;YACzB,MAAM,CAAC,MAAM,EAAE,IAAI,CAAC,GAAG,GAAG,CAAC,IAAI,CAAC,CAAA;YAChC,MAAM,CAAC,GAAG,IAAI,GAAG,MAAM,CAAA;YACvB,IAAI,IAAI,GAAG,IAAI,IAAI,MAAM,GAAG,IAAI,EAAE,CAAC;gBACjC,SAAQ;YACV,CAAC;YACD,MAAM,CAAC,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;YACrC,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,UAAU,CAAE,CAAA;YACrD,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAC,UAAU,CAAA;YAClC,MAAM,IAAI,GAAG,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;YAC5D,MAAM,CAAC,IAAI,CACT,MAAM,KAAK,SAAS;gBAClB,CAAC,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE;gBACxD,CAAC,CAAC;oBACE,IAAI;oBACJ,IAAI;oBACJ,MAAM;oBACN,OAAO,EAAE,SAAS,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;iBAC/D,CACN,CAAA;YACD,IAAI,QAAQ,EAAE,CAAC;gBACb,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAA;YACjD,CAAC;QACH,CAAC;QAED,KAAK,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,MAAM,EAAE,CAAC;YACxD,oEAAoE;YACpE,oDAAoD;YACpD,MAAM,IAAI,GAAG,OAAQ,CAAC,IAAI,CAAC,CAAA;YAC3B,mEAAmE;YACnE,IACE,IAAI,KAAK,SAAS;gBAClB,WAAW,CAAC,IAAI,EAAE,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,GAAG,CAAC,EAC/C,CAAC;gBACD,UAAU,EAAE,CAAC,IAAI,CAAC,CAAA;gBAClB,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,IAAI,EAAE,CAAC,CAAA;YAC9D,CAAC;QACH,CAAC;QACD,GAAG,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,CAAC,CAAA;IACxC,CAAC;IACD,OAAO,GAAG,CAAA;AACZ,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,gBAAgB,CAAqB,EACnD,GAAG,EACH,YAAY,EACZ,GAAG,MAAM,EAMV;IACC,IAAI,IAAI,GAAG,EAAE,CAAA;IACb,MAAM,OAAO,GAAG,CAAC,QAAgB,EAAE,EAAE;QACnC,MAAM,IAAI,GAAG,GAAG,QAAQ,eAAe,CAAA;QACvC,IAAI,IAAI,KAAK,IAAI,EAAE,CAAC;YAClB,GAAG,CAAC,IAAI,GAAG,IAAI,CAAA;YACf,IAAI,GAAG,IAAI,CAAA;QACb,CAAC;IACH,CAAC,CAAA;IACD,MAAM,IAAI,GAAG,gBAAgB,CAAC;QAC5B,GAAG,MAAM;QACT,WAAW,EAAE,CAAC,IAAI,EAAE,QAAQ,EAAE,EAAE;YAC9B,OAAO,CAAC,QAAQ,CAAC,CAAA;YACjB,OAAO,GAAG,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,KAAK,CAAA;QACpC,CAAC;KACF,CAAC,CAAA;IACF,KAAK,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,IAAI,IAAI,EAAE,CAAC;QAChD,KAAK,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,MAAM,EAAE,CAAC;YACpD,GAAG,CAAC,SAAS,GAAG,IAAI,CAAA;YACpB,GAAG,CAAC,WAAW,GAAG,MAAM,CAAA;YACxB,IAAI,GAAG,EAAE,CAAC;gBACR,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAA;gBACxC,GAAG,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAA;YAC5C,CAAC;iBAAM,IAAI,OAAO,EAAE,CAAC;gBACnB,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,GAAG,CAAC,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAE,CAAC,CAAA;gBAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;oBACxC,GAAG,CAAC,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAE,CAAC,CAAA;gBAC5B,CAAC;gBACD,GAAG,CAAC,SAAS,EAAE,CAAA;gBACf,GAAG,CAAC,IAAI,EAAE,CAAA;gBACV,GAAG,CAAC,MAAM,EAAE,CAAA;YACd,CAAC;QACH,CAAC;QACD,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACtB,OAAO,CAAC,QAAQ,CAAC,CAAA;YACjB,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;YACxB,GAAG,CAAC,YAAY,GAAG,QAAQ,CAAA;YAC3B,KAAK,MAAM,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,MAAM,EAAE,CAAC;gBAC1C,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;gBAClC,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;YAC1B,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC;AAED;;;;;;;;;GASG;AACH,SAAS,SAAS,CAAC,EACjB,CAAC,EACD,CAAC,EACD,CAAC,EACD,CAAC,EACD,IAAI,EACJ,IAAI,EACJ,MAAM,GASP;IACC,MAAM,GAAG,GAAG,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IAClC,MAAM,IAAI,GAAG,MAAM,GAAG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package/dist/components/msa/msaRaster.d.ts

@@ -39,7 +39,20 @@ export declare function rasterPixels({ spec, col0, row0, width, height, colStep,
     toPixel?: (css: string) => number;
     out?: Uint32Array;
 }): Uint32Array<ArrayBufferLike>;
-export declare function rasterSupported(): boolean;
+/**
+ * A canvas off the page, an OffscreenCanvas where there is one, with its 2d
+ * context, or undefined where the context fails `usable` (jsdom has none).
+ */
+export declare function makeOffscreenCanvas<Ctx>(width: number, height: number, usable: (ctx: unknown) => ctx is Ctx, settings?: CanvasRenderingContext2DSettings): {
+    canvas: RasterCanvas;
+    ctx: (CanvasRenderingContext2D | OffscreenCanvasRenderingContext2D | null | undefined) & Ctx;
+} | undefined;
+/**
+ * Whether the alignment background comes from the raster: true with
+ * background coloring on, the domain overlay off, and a 2d context that reads
+ * back, which jsdom lacks. renderMSABlock paints each cell otherwise.
+ */
+export declare function rasterApplies(model: Pick<MsaViewModel, 'actuallyShowDomains' | 'bgColor'>): boolean;
 /**
  * Paints the alignment background of one MSA block from cached
  * one-pixel-per-cell tiles. The tiles do not depend on the zoom level, so a zoom

package/dist/components/msa/msaRaster.js

@@ -164,16 +164,23 @@ function usableRasterCtx(ctx) {
         typeof c.clearRect === 'function' &&
         typeof c.fillRect === 'function');
 }
-function makeRasterCanvas(width, height) {
+/**
+ * A canvas off the page, an OffscreenCanvas where there is one, with its 2d
+ * context, or undefined where the context fails `usable` (jsdom has none).
+ */
+export function makeOffscreenCanvas(width, height, usable, settings) {
     const canvas = typeof OffscreenCanvas !== 'undefined'
         ? new OffscreenCanvas(width, height)
         : typeof document !== 'undefined'
             ? Object.assign(document.createElement('canvas'), { width, height })
             : undefined;
-    const ctx = canvas?.getContext('2d', { willReadFrequently: true });
-    return usableRasterCtx(ctx)
-        ? { canvas: canvas, ctx }
-        : undefined;
+    const ctx = canvas?.getContext('2d', settings);
+    return usable(ctx) ? { canvas: canvas, ctx } : undefined;
+}
+function makeRasterCanvas(width, height) {
+    return makeOffscreenCanvas(width, height, usableRasterCtx, {
+        willReadFrequently: true,
+    });
 }
 function paint(width, height, fill) {
     const made = makeRasterCanvas(width, height);
@@ -186,11 +193,14 @@ function paint(width, height, fill) {
     return made.canvas;
 }
 let supported;
-// jsdom, and any browser without a 2d context, has no raster to draw; the
-// per-cell painter in renderMSABlock stays the fallback
-export function rasterSupported() {
+/**
+ * Whether the alignment background comes from the raster: true with
+ * background coloring on, the domain overlay off, and a 2d context that reads
+ * back, which jsdom lacks. renderMSABlock paints each cell otherwise.
+ */
+export function rasterApplies(model) {
     supported ??= !!makeRasterCanvas(1, 1);
-    return supported;
+    return !model.actuallyShowDomains && model.bgColor && supported;
 }
 const caches = new WeakMap();
 // Everything a cell's color depends on; a change to any of them starts a fresh

package/dist/components/msa/msaRaster.js.map

@@ -1 +1 @@
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package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts

@@ -1,5 +1,8 @@
+import type { HierarchyNode } from '../../hierarchy.ts';
 import type { MsaViewModel } from '../../model.ts';
+import type { DomainBand, NodeWithIdsAndLength } from '../../types.ts';
 import type { RenderCtx } from '../renderCtx.ts';
+import type { SpanSource } from './drawFeatureSpans.ts';
 import type { Theme } from '@mui/material';
 export declare function renderBoxFeatureCanvasBlock({ model, theme, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }: {
     offsetX: number;
@@ -11,3 +14,9 @@ export declare function renderBoxFeatureCanvasBlock({ model, theme, offsetX, off
     blockSizeXOverride?: number;
     blockSizeYOverride?: number;
 }): void;
+/**
+ * The domain overlay's spans over `leaves`, in alignment pixels: filled rows,
+ * an underline bar, or thin sub-rows, as `domainUnderline` and
+ * `subFeatureRows` decide.
+ */
+export declare function domainOverlaySource(model: MsaViewModel, leaves: HierarchyNode<NodeWithIdsAndLength>[]): SpanSource<DomainBand>;

package/dist/components/msa/renderBoxFeatureCanvasBlock.js

@@ -3,7 +3,7 @@ import { contrastTextFn } from '../../util.js';
 import { getVisibleLeaves } from '../getVisibleLeaves.js';
 import { drawFeatureSpans, spanRows } from './drawFeatureSpans.js';
 export function renderBoxFeatureCanvasBlock({ model, theme, offsetX, offsetY, ctx, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }) {
-    const { blockSize, rowHeight, highResScaleFactor, actuallyShowDomains, subFeatureRows, colWidth, featureColors, featureLabels, segmentLabels, showMsaLetters, domainUnderline, domainBands, } = model;
+    const { blockSize, rowHeight, highResScaleFactor, actuallyShowDomains } = model;
     if (!actuallyShowDomains) {
         return;
     }
@@ -13,6 +13,21 @@ export function renderBoxFeatureCanvasBlock({ model, theme, offsetX, offsetY, ct
     ctx.resetTransform();
     ctx.scale(k, k);
     ctx.translate(-offsetX, rowHeight / 2 - offsetY);
+    drawFeatureSpans({
+        ctx,
+        ...domainOverlaySource(model, getVisibleLeaves({ model, offsetY, blockSizeY: by })),
+        contrastText: contrastTextFn(theme),
+        xMin: offsetX,
+        xMax: offsetX + bx,
+    });
+}
+/**
+ * The domain overlay's spans over `leaves`, in alignment pixels: filled rows,
+ * an underline bar, or thin sub-rows, as `domainUnderline` and
+ * `subFeatureRows` decide.
+ */
+export function domainOverlaySource(model, leaves) {
+    const { rowHeight, subFeatureRows, colWidth, featureColors, featureLabels, segmentLabels, showMsaLetters, domainUnderline, domainBands, } = model;
     // the plain and underline modes give every band the same height; a sub-row
     // band is thinner, and how thin depends on how many lanes its row needs
     const barHeight = domainUnderline
@@ -28,9 +43,8 @@ export function renderBoxFeatureCanvasBlock({ model, theme, offsetX, offsetY, ct
     // whole band. Keyed by accession rather than drawn on row 0, because the rows
     // carrying the gene model are often not the first ones in the alignment
     const labelled = drawSegmentLabels ? new Set() : undefined;
-    drawFeatureSpans({
-        ctx,
-        rows: spanRows(getVisibleLeaves({ model, offsetY, blockSizeY: by }), domainBands),
+    return {
+        rows: spanRows(leaves, domainBands),
         layout: {
             // sub-rows are thin, but a row whose lanes would spill onto the row below
             // shares out the row height between them instead
@@ -53,9 +67,6 @@ export function renderBoxFeatureCanvasBlock({ model, theme, offsetX, offsetY, ct
                 ? segmentLabels.get(band.annotation.accession)
                 : undefined),
         labelDrawn: band => labelled?.add(band.annotation.accession),
-        contrastText: contrastTextFn(theme),
-        xMin: offsetX,
-        xMax: offsetX + bx,
-    });
+    };
 }
 //# sourceMappingURL=renderBoxFeatureCanvasBlock.js.map

package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map

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package/dist/components/msa/renderHighlights.d.ts

@@ -67,8 +67,8 @@ export declare function renderSelection({ ctx, model, offsetX, offsetY, height,
 }): void;
 /**
  * The overlay parts that come from the snapshot: the reference row's tint, a
- * bordered band per run of highlighted columns, the `highlights` layer and the
- * selected block. The live overlay draws these under its hover and click
+ * bordered band per run of highlighted columns and the `highlights` layer. The
+ * live overlay draws these under the selected block and its hover and click
  * bands; the SVG export draws only these.
  */
 export declare function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }: {

package/dist/components/msa/renderHighlights.js

@@ -137,8 +137,8 @@ export function renderSelection({ ctx, model, offsetX, offsetY, height, }) {
 }
 /**
  * The overlay parts that come from the snapshot: the reference row's tint, a
- * bordered band per run of highlighted columns, the `highlights` layer and the
- * selected block. The live overlay draws these under its hover and click
+ * bordered band per run of highlighted columns and the `highlights` layer. The
+ * live overlay draws these under the selected block and its hover and click
  * bands; the SVG export draws only these.
  */
 export function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }) {
@@ -157,6 +157,5 @@ export function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY
         ctx.strokeRect(x, 0, w, height);
     }
     renderHighlights({ ctx, model, theme, offsetX, offsetY, width, height });
-    renderSelection({ ctx, model, offsetX, offsetY, height });
 }
 //# sourceMappingURL=renderHighlights.js.map

package/dist/components/msa/renderHighlights.js.map

@@ -1 +1 @@
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package/dist/components/msa/renderMSAMouseover.js

@@ -1,5 +1,5 @@
 import { clickColor, hoverColor, multiRowHoverColor } from '../overlayColors.js';
-import { renderPersistentHighlights } from './renderHighlights.js';
+import { renderPersistentHighlights, renderSelection, } from './renderHighlights.js';
 export function renderMouseover({ ctx, model, theme, }) {
     const { mouseCol, colWidth, msaCanvasWidth: width, height, rowHeight, scrollX, scrollY, mouseRow, mouseClickRow, mouseClickCol, highResScaleFactor, hoveredRowIndices, } = model;
     ctx.resetTransform();
@@ -22,6 +22,7 @@ export function renderMouseover({ ctx, model, theme, }) {
         width,
         height,
     });
+    renderSelection({ ctx, model, offsetX: -scrollX, offsetY: -scrollY, height });
     // every tip under a hovered tree node stays lit
     ctx.fillStyle = multiRowHoverColor;
     for (const rowIndex of hoveredRowIndices) {