react-msaview 8.4.1 → 9.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (193) hide show
  1. package/README.md +19 -10
  2. package/bundle/index.js +74 -74
  3. package/bundle/index.js.map +4 -4
  4. package/dist/colorSchemes.js +1 -3
  5. package/dist/colorSchemes.js.map +1 -1
  6. package/dist/columnCounts.d.ts +0 -1
  7. package/dist/columnCounts.js +1 -1
  8. package/dist/columnCounts.js.map +1 -1
  9. package/dist/components/Loading.js +5 -5
  10. package/dist/components/Loading.js.map +1 -1
  11. package/dist/components/MSAView.js +2 -2
  12. package/dist/components/MSAView.js.map +1 -1
  13. package/dist/components/MSAViewer.d.ts +1892 -7
  14. package/dist/components/MSAViewer.js +144 -202
  15. package/dist/components/MSAViewer.js.map +1 -1
  16. package/dist/components/ResizeHandles.js +4 -3
  17. package/dist/components/ResizeHandles.js.map +1 -1
  18. package/dist/components/Track.js +3 -2
  19. package/dist/components/Track.js.map +1 -1
  20. package/dist/components/controls.d.ts +11 -0
  21. package/dist/components/controls.js +48 -0
  22. package/dist/components/controls.js.map +1 -0
  23. package/dist/components/dialogs/AnnotationFileDialog.js +5 -16
  24. package/dist/components/dialogs/AnnotationFileDialog.js.map +1 -1
  25. package/dist/components/dialogs/ExportSVGDialog.js +5 -7
  26. package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
  27. package/dist/components/dialogs/HelpDialog.d.ts +6 -0
  28. package/dist/components/dialogs/HelpDialog.js +30 -0
  29. package/dist/components/dialogs/HelpDialog.js.map +1 -0
  30. package/dist/components/header/FileMenu.js +33 -7
  31. package/dist/components/header/FileMenu.js.map +1 -1
  32. package/dist/components/header/Header.js +4 -6
  33. package/dist/components/header/Header.js.map +1 -1
  34. package/dist/components/header/TreeSettingsMenu.d.ts +1 -1
  35. package/dist/components/header/TreeSettingsMenu.js +1 -32
  36. package/dist/components/header/TreeSettingsMenu.js.map +1 -1
  37. package/dist/components/header/ZoomControls.js +28 -44
  38. package/dist/components/header/ZoomControls.js.map +1 -1
  39. package/dist/components/header/settingsMenuItems.d.ts +1 -0
  40. package/dist/components/header/settingsMenuItems.js +48 -1
  41. package/dist/components/header/settingsMenuItems.js.map +1 -1
  42. package/dist/components/import/data/seq2.d.ts +0 -1
  43. package/dist/components/import/data/seq2.js +0 -17
  44. package/dist/components/import/data/seq2.js.map +1 -1
  45. package/dist/components/msa/MSACanvas.js +2 -1
  46. package/dist/components/msa/MSACanvas.js.map +1 -1
  47. package/dist/components/msa/MSACanvasBlock.js +2 -5
  48. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  49. package/dist/components/msa/drawFeatureSpans.d.ts +50 -11
  50. package/dist/components/msa/drawFeatureSpans.js +99 -56
  51. package/dist/components/msa/drawFeatureSpans.js.map +1 -1
  52. package/dist/components/msa/msaRaster.d.ts +14 -1
  53. package/dist/components/msa/msaRaster.js +19 -9
  54. package/dist/components/msa/msaRaster.js.map +1 -1
  55. package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts +9 -0
  56. package/dist/components/msa/renderBoxFeatureCanvasBlock.js +19 -8
  57. package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -1
  58. package/dist/components/msa/renderHighlights.d.ts +2 -2
  59. package/dist/components/msa/renderHighlights.js +2 -3
  60. package/dist/components/msa/renderHighlights.js.map +1 -1
  61. package/dist/components/msa/renderMSAMouseover.js +2 -1
  62. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  63. package/dist/components/renderCtx.d.ts +1 -1
  64. package/dist/components/rowpanels/renderFeaturePanel.d.ts +5 -1
  65. package/dist/components/rowpanels/renderFeaturePanel.js +12 -5
  66. package/dist/components/rowpanels/renderFeaturePanel.js.map +1 -1
  67. package/dist/components/tracks/drawTracks.d.ts +1 -53
  68. package/dist/components/tracks/drawTracks.js +5 -5
  69. package/dist/components/tracks/drawTracks.js.map +1 -1
  70. package/dist/components/tree/CladeLabels.d.ts +1 -1
  71. package/dist/components/tree/CladeLabels.js +22 -34
  72. package/dist/components/tree/CladeLabels.js.map +1 -1
  73. package/dist/components/tree/TreeCanvas.js +4 -4
  74. package/dist/components/tree/TreeCanvas.js.map +1 -1
  75. package/dist/components/tree/TreeCanvasBlock.js +4 -4
  76. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  77. package/dist/components/tree/TreeOverview.js +10 -5
  78. package/dist/components/tree/TreeOverview.js.map +1 -1
  79. package/dist/components/tree/TreePanel.js +6 -2
  80. package/dist/components/tree/TreePanel.js.map +1 -1
  81. package/dist/components/tree/TreeRuler.js +2 -2
  82. package/dist/components/tree/TreeRuler.js.map +1 -1
  83. package/dist/components/tree/cladeBrackets.d.ts +22 -17
  84. package/dist/components/tree/cladeBrackets.js +40 -9
  85. package/dist/components/tree/cladeBrackets.js.map +1 -1
  86. package/dist/components/tree/clickMap.d.ts +2 -0
  87. package/dist/components/tree/clickMap.js.map +1 -1
  88. package/dist/components/tree/ellipsize.d.ts +8 -0
  89. package/dist/components/tree/ellipsize.js +20 -0
  90. package/dist/components/tree/ellipsize.js.map +1 -0
  91. package/dist/components/tree/renderTreeCanvas.js +30 -32
  92. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  93. package/dist/components/tree/renderTreeMouseover.js +1 -1
  94. package/dist/components/tree/renderTreeMouseover.js.map +1 -1
  95. package/dist/components/tree/renderTreeOverview.js +4 -11
  96. package/dist/components/tree/renderTreeOverview.js.map +1 -1
  97. package/dist/constants.d.ts +6 -3
  98. package/dist/constants.js +16 -6
  99. package/dist/constants.js.map +1 -1
  100. package/dist/element.js +3 -6
  101. package/dist/element.js.map +1 -1
  102. package/dist/exportLayout.d.ts +39 -0
  103. package/dist/exportLayout.js +78 -0
  104. package/dist/exportLayout.js.map +1 -0
  105. package/dist/headlessRenderEnv.d.ts +12 -39
  106. package/dist/headlessRenderEnv.js +18 -12
  107. package/dist/headlessRenderEnv.js.map +1 -1
  108. package/dist/hierarchy.d.ts +5 -8
  109. package/dist/hierarchy.js +5 -79
  110. package/dist/hierarchy.js.map +1 -1
  111. package/dist/index.d.ts +3 -1
  112. package/dist/index.js +4 -1
  113. package/dist/index.js.map +1 -1
  114. package/dist/measureTextCanvas.d.ts +7 -0
  115. package/dist/measureTextCanvas.js +10 -8
  116. package/dist/measureTextCanvas.js.map +1 -1
  117. package/dist/model/treeModel.d.ts +14 -25
  118. package/dist/model/treeModel.js +16 -30
  119. package/dist/model/treeModel.js.map +1 -1
  120. package/dist/model.d.ts +108 -79
  121. package/dist/model.js +258 -209
  122. package/dist/model.js.map +1 -1
  123. package/dist/renderToSvg.d.ts +2 -7
  124. package/dist/renderToSvg.js +49 -135
  125. package/dist/renderToSvg.js.map +1 -1
  126. package/dist/svgTestUtil.d.ts +48 -48
  127. package/dist/tipLabels.d.ts +8 -0
  128. package/dist/tipLabels.js +46 -0
  129. package/dist/tipLabels.js.map +1 -0
  130. package/dist/types.d.ts +0 -1
  131. package/dist/version.d.ts +1 -1
  132. package/dist/version.js +1 -1
  133. package/dist/viewerSnapshot.d.ts +169 -0
  134. package/dist/viewerSnapshot.js +100 -0
  135. package/dist/viewerSnapshot.js.map +1 -0
  136. package/package.json +3 -3
  137. package/src/colorSchemes.ts +1 -4
  138. package/src/columnCounts.ts +1 -1
  139. package/src/components/Loading.tsx +19 -12
  140. package/src/components/MSAView.tsx +2 -2
  141. package/src/components/MSAViewer.tsx +276 -256
  142. package/src/components/ResizeHandles.tsx +10 -3
  143. package/src/components/Track.tsx +3 -2
  144. package/src/components/controls.ts +61 -0
  145. package/src/components/dialogs/AnnotationFileDialog.tsx +5 -21
  146. package/src/components/dialogs/ExportSVGDialog.tsx +8 -19
  147. package/src/components/dialogs/HelpDialog.tsx +79 -0
  148. package/src/components/header/FileMenu.tsx +33 -7
  149. package/src/components/header/Header.tsx +4 -6
  150. package/src/components/header/TreeSettingsMenu.tsx +2 -32
  151. package/src/components/header/ZoomControls.tsx +30 -66
  152. package/src/components/header/settingsMenuItems.ts +67 -0
  153. package/src/components/import/data/seq2.ts +0 -18
  154. package/src/components/msa/MSACanvas.tsx +2 -1
  155. package/src/components/msa/MSACanvasBlock.tsx +2 -6
  156. package/src/components/msa/drawFeatureSpans.ts +160 -79
  157. package/src/components/msa/msaRaster.ts +27 -9
  158. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +39 -24
  159. package/src/components/msa/renderHighlights.ts +2 -3
  160. package/src/components/msa/renderMSAMouseover.ts +5 -1
  161. package/src/components/renderCtx.ts +0 -1
  162. package/src/components/rowpanels/renderFeaturePanel.ts +26 -7
  163. package/src/components/tracks/drawTracks.ts +5 -5
  164. package/src/components/tree/CladeLabels.tsx +30 -54
  165. package/src/components/tree/TreeCanvas.tsx +10 -4
  166. package/src/components/tree/TreeCanvasBlock.tsx +4 -4
  167. package/src/components/tree/TreeOverview.tsx +10 -5
  168. package/src/components/tree/TreePanel.tsx +8 -2
  169. package/src/components/tree/TreeRuler.tsx +7 -3
  170. package/src/components/tree/cladeBrackets.ts +59 -19
  171. package/src/components/tree/clickMap.ts +2 -0
  172. package/src/components/tree/ellipsize.ts +24 -0
  173. package/src/components/tree/renderTreeCanvas.ts +37 -36
  174. package/src/components/tree/renderTreeMouseover.ts +1 -1
  175. package/src/components/tree/renderTreeOverview.ts +7 -14
  176. package/src/constants.ts +17 -6
  177. package/src/element.ts +3 -7
  178. package/src/exportLayout.ts +134 -0
  179. package/src/headlessRenderEnv.ts +24 -11
  180. package/src/hierarchy.ts +5 -88
  181. package/src/index.ts +5 -5
  182. package/src/measureTextCanvas.ts +10 -8
  183. package/src/model/treeModel.ts +17 -34
  184. package/src/model.ts +296 -243
  185. package/src/renderToSvg.tsx +72 -209
  186. package/src/tipLabels.ts +51 -0
  187. package/src/types.ts +0 -1
  188. package/src/version.ts +1 -1
  189. package/src/viewerSnapshot.ts +147 -0
  190. package/dist/components/header/ZoomMenu.d.ts +0 -6
  191. package/dist/components/header/ZoomMenu.js +0 -37
  192. package/dist/components/header/ZoomMenu.js.map +0 -1
  193. package/src/components/header/ZoomMenu.tsx +0 -48

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