react-msaview 8.3.0 → 8.4.1

package/dist/components/header/goTo.js

@@ -0,0 +1,69 @@
+export function findableRowNames(model) {
+    const collapsed = new Set(model.collapsed);
+    return model.leaves
+        .filter(({ data: { id, name } }) => !(collapsed.has(id) && name === id))
+        .map(leaf => leaf.data.name);
+}
+// not MUI's createFilterOptions: JBrowse hosts do not re-export it, so
+// jbrowse-plugin-msaview would fail to load
+export function rowNameSuggestions(names, input, limit = 50) {
+    const query = input.toLowerCase();
+    return names
+        .filter(name => name.toLowerCase().includes(query))
+        .slice(0, limit);
+}
+/**
+ * The visible row and column a "Go to" entry names: a row by its name, the
+ * column the ruler numbers N, or residue N of a row written `name:N`. A name
+ * is tried whole first, so a row called `chr1:100` stays reachable.
+ */
+export function resolveGoTo(model, text) {
+    const query = text.trim();
+    const row = model.rowNamesSet.get(query);
+    if (row !== undefined) {
+        return { row };
+    }
+    const residue = /^(.+):(\d+)$/.exec(query);
+    if (residue) {
+        const [, name = '', pos] = residue;
+        const rowIndex = model.rowNamesSet.get(name);
+        const col = rowIndex === undefined ? undefined : columnOfResidue(model, name, +pos);
+        return col === undefined ? undefined : { row: rowIndex, col };
+    }
+    if (/^\d+$/.test(query)) {
+        const n = +query;
+        const { relativeTo, numColumns } = model;
+        const col = relativeTo
+            ? columnOfResidue(model, relativeTo, n)
+            : n >= 1 && n <= numColumns
+                ? n - 1
+                : undefined;
+        return col === undefined ? undefined : { col };
+    }
+    return undefined;
+}
+// seqPosToVisibleCol maps a residue past the row's end to the column after
+// it; here that residue names nothing
+function columnOfResidue(model, name, pos) {
+    const globalCol = model.seqPosIndex(name)?.[pos - 1];
+    return globalCol === undefined
+        ? undefined
+        : model.globalColToVisibleCol(globalCol);
+}
+/** centers the view on the entry's target and lights it; false if none */
+export function goTo(model, text) {
+    const target = resolveGoTo(model, text);
+    if (target) {
+        const { row, col } = target;
+        const { rowHeight, colWidth, msaAreaHeight, msaAreaWidth } = model;
+        if (row !== undefined) {
+            model.setScrollY(-(row + 0.5) * rowHeight + msaAreaHeight / 2);
+        }
+        if (col !== undefined) {
+            model.setScrollX(-(col + 0.5) * colWidth + msaAreaWidth / 2);
+        }
+        model.setMousePos(col, row);
+    }
+    return target !== undefined;
+}
+//# sourceMappingURL=goTo.js.map

package/dist/components/header/goTo.js.map

@@ -0,0 +1 @@
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package/dist/components/msa/MSACanvas.js

@@ -23,11 +23,22 @@ const MSACanvas = observer(function ({ model }) {
         onZoom,
         scrollZoom,
     });
-    return (React.createElement("div", { ref: ref, "data-testid": "msa_canvas", tabIndex: 0, "aria-label": "Alignment. Arrow keys scroll, shift pages, + and - zoom, Home and End jump to the first and last column.", onKeyDown: event => {
+    return (React.createElement("div", { ref: ref, "data-testid": "msa_canvas", tabIndex: 0, "aria-label": "Alignment. Arrow keys scroll, shift pages, + and - zoom, Home and End jump to the first and last column. Shift-drag selects cells, and Escape clears the selection.", onKeyDown: event => {
             if (onMsaKey(model, event)) {
                 event.preventDefault();
             }
-        }, onMouseDown: onMouseDown, onMouseUp: onMouseUp, style: {
+        }, onMouseDown: event => {
+            // a shifted press selects cells (useMsaBlockMouse), so it takes the
+            // focus Escape clears from, and leaves out the pan and the page's own
+            // text selection
+            if (event.shiftKey) {
+                event.preventDefault();
+                ref.current?.focus({ preventScroll: true });
+            }
+            else {
+                onMouseDown(event);
+            }
+        }, onMouseUp: onMouseUp, style: {
             position: 'relative',
             height,
             width: msaCanvasWidth,

package/dist/components/msa/MSACanvas.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MSACanvas.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;AACxD,OAAO,OAAO,MAAM,cAAe,CAAA;AACnC,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAA;AAIvC,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,EACJ,GAAG,EACH,aAAa,EACb,MAAM,EACN,cAAc,EACd,QAAQ,EACR,UAAU,EACV,OAAO,EACP,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,MAAM,GAAG,WAAW,CACxB,CAAC,WAAmB,EAAE,OAAe,EAAE,OAAe,EAAE,EAAE;QACxD,KAAK,CAAC,SAAS,CAAC,WAAW,EAAE,OAAO,EAAE,OAAO,EAAE,KAAK,CAAC,aAAa,CAAC,CAAA;IACrE,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,GAAG,cAAc,CAAC;QAChD,GAAG;QACH,SAAS;QACT,SAAS;QACT,MAAM;QACN,UAAU;KACX,CAAC,CAAA;IAEF,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBAGI,YAAY,EACxB,QAAQ,EAAE,CAAC,gBACA,qKAAqK,EAChL,SAAS,EAAE,KAAK,CAAC,EAAE;YACjB,IAAI,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,CAAC;gBAC3B,KAAK,CAAC,cAAc,EAAE,CAAA;YACxB,CAAC;QACH,CAAC,EACD,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,oEAAoE;YACpE,sEAAsE;YACtE,iBAAiB;YACjB,IAAI,KAAK,CAAC,QAAQ,EAAE,CAAC;gBACnB,KAAK,CAAC,cAAc,EAAE,CAAA;gBACtB,GAAG,CAAC,OAAO,EAAE,KAAK,CAAC,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAA;YAC7C,CAAC;iBAAM,CAAC;gBACN,WAAW,CAAC,KAAK,CAAC,CAAA;YACpB,CAAC;QACH,CAAC,EACD,SAAS,EAAE,SAAS,EACpB,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM;YACN,KAAK,EAAE,cAAc;YACrB,QAAQ,EAAE,QAAQ;SACnB,IAEA,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAGrC,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,GAAG,EAAE,CAAC;YACN,IAAI,EAAE,CAAC;YACP,SAAS,EAAE,aAAa,OAAO,OAAO,OAAO,KAAK;YAClD,UAAU,EAAE,WAAW;SACxB,IAEA,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CAC1B,oBAAC,cAAc,IACb,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,EAClB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,EAAE,EACX,OAAO,EAAE,EAAE,GACX,CACH,CAAC,CACE,CACP,CAAC,CAAC,CAAC,CACF,oBAAC,OAAO,OAAG,CACZ,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}

package/dist/components/msa/MSACanvasBlock.js

@@ -49,7 +49,11 @@ const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
                 if (ref.current) {
                     onMouseMove(event, ref.current);
                 }
-            }, onMouseDown: onMouseDown, onClick: event => {
+            }, onMouseDown: event => {
+                if (ref.current) {
+                    onMouseDown(event, ref.current);
+                }
+            }, onClick: event => {
                 if (ref.current) {
                     onClick(event, ref.current);
                 }

package/dist/components/msa/MSACanvasBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MSACanvasBlock.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvasBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,WAAW,MAAM,8BAA8B,CAAA;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,MAAM,2BAA2B,CAAA;AAC5D,OAAO,EAAE,aAAa,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAA;AAC/D,OAAO,EAAE,2BAA2B,EAAE,MAAM,kCAAkC,CAAA;AAC9E,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAA;AACpD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AAIxD,MAAM,cAAc,GAAG,QAAQ,CAAC,UAAU,EACxC,KAAK,EACL,OAAO,EACP,OAAO,GAKR;IACC,MAAM,EAAE,SAAS,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IAC/C,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,OAAO,EAAE,YAAY,EAAE,GAC/D,gBAAgB,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,CAAC,CAAA;IAE/C,MAAM,UAAU,GAAG,SAAS,GAAG,kBAAkB,CAAA;IACjD,MAAM,GAAG,GAAG,gBAAgB,CAAC;QAC3B,IAAI,EAAE,GAAG,CAAC,EAAE;YACV,GAAG,CAAC,cAAc,EAAE,CAAA;YACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,UAAU,EAAE,UAAU,CAAC,CAAA;YAC3C,2BAA2B,CAAC;gBAC1B,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,OAAO;gBACP,KAAK;aACN,CAAC,CAAA;YACF,yEAAyE;YACzE,yEAAyE;YACzE,yBAAyB;YACzB,MAAM,WAAW,GACf,CAAC,KAAK,CAAC,mBAAmB,IAAI,KAAK,CAAC,OAAO,IAAI,eAAe,EAAE,CAAA;YAClE,IAAI,WAAW,EAAE,CAAC;gBAChB,aAAa,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,CAAC,CAAA;YACxD,CAAC;YACD,cAAc,CAAC;gBACb,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,OAAO;gBACP,KAAK;gBACL,WAAW;aACZ,CAAC,CAAA;QACJ,CAAC;QACD,KAAK,EAAE,UAAU;QACjB,MAAM,EAAE,UAAU;QAClB,IAAI,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,KAAK,CAAC;KACvC,CAAC,CAAA;IAEF,MAAM,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAEpD,OAAO,CACL;QACE,gCACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;oBAChB,WAAW,CAAC,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,CAAA;gBACjC,CAAC;YACH,CAAC,EACD,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;oBAChB,WAAW,CAAC,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,CAAA;gBACjC,CAAC;YACH,CAAC,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;oBAChB,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,OAAO,CAAC,CAAA;gBAC7B,CAAC;YACH,CAAC,EACD,YAAY,EAAE,GAAG,EAAE;gBACjB,YAAY,EAAE,CAAA;YAChB,CAAC,EACD,KAAK,EAAE,UAAU,EACjB,MAAM,EAAE,UAAU,EAClB,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,OAAO;gBACZ,IAAI,EAAE,OAAO;gBACb,KAAK,EAAE,SAAS;gBAChB,MAAM,EAAE,SAAS;aAClB,GACD;QACD,MAAM,CAAC,CAAC,CAAC,CACR,oBAAC,WAAW,IAAC,WAAW,EAAE,MAAM,CAAC,WAAW,IACzC,gBAAgB,CAAC,CAAC,CAAC,CAClB;;YACc,gBAAgB,CAAC,OAAO,CAAC,MAAM;YAC1C,KAAK,CAAC,YAAY,KAAK,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI;;YAAI,GAAG;YACnD,gBAAgB,CAAC,OAAO,CAAC,MAAM,GAAG,EAAE;gBACnC,CAAC,CAAC,GAAG,gBAAgB,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK;gBAC/C,CAAC,CAAC,gBAAgB,CAAC,OAAO,CAC3B,CACJ,CAAC,CAAC,CAAC,CACF,gBAAgB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CACxB,6BAAK,GAAG,EAAE,GAAG,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,GAAG,EAAE;YAC5C,+BAAI,CAAC,CAAC,IAAI,CAAK;;YAAG,CAAC,CAAC,SAAS;;YAAI,CAAC,CAAC,KAAK;;YAAG,CAAC,CAAC,GAAG;YAC/C,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CACf;gBACE,+BAAM;gBACL,CAAC,CAAC,WAAW,CACb,CACJ,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAC,CACH,CACW,CACf,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}

package/dist/components/msa/msaKeys.js

@@ -28,6 +28,12 @@ export function onMsaKey(model, { key, shiftKey }) {
         case 'End':
             model.setScrollX(model.maxScrollX);
             return true;
+        case 'Escape':
+            if (model.selection) {
+                model.clearSelection();
+                return true;
+            }
+            return false;
         default:
             return false;
     }

package/dist/components/msa/msaKeys.js.map

@@ -1 +1 @@
-{"version":3,"file":"msaKeys.js","sourceRoot":"","sources":["../../../src/components/msa/msaKeys.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,QAAQ,CACtB,KAAmB,EACnB,EAAE,GAAG,EAAE,QAAQ,EAAsC;IAErD,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,cAAc,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IACpE,MAAM,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,QAAQ,CAAA;IAC/C,MAAM,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,SAAS,CAAA;IAC/C,QAAQ,GAAG,EAAE,CAAC;QACZ,KAAK,WAAW;YACd,KAAK,CAAC,SAAS,CAAC,EAAE,CAAC,CAAA;YACnB,OAAO,IAAI,CAAA;QACb,KAAK,YAAY;YACf,KAAK,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAA;YACpB,OAAO,IAAI,CAAA;QACb,KAAK,SAAS;YACZ,KAAK,CAAC,SAAS,CAAC,EAAE,CAAC,CAAA;YACnB,OAAO,IAAI,CAAA;QACb,KAAK,WAAW;YACd,KAAK,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAA;YACpB,OAAO,IAAI,CAAA;QACb,KAAK,GAAG,CAAC;QACT,KAAK,GAAG;YACN,KAAK,CAAC,MAAM,EAAE,CAAA;YACd,OAAO,IAAI,CAAA;QACb,KAAK,GAAG;YACN,KAAK,CAAC,OAAO,EAAE,CAAA;YACf,OAAO,IAAI,CAAA;QACb,KAAK,MAAM;YACT,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YACnB,OAAO,IAAI,CAAA;QACb,KAAK,KAAK;YACR,KAAK,CAAC,UAAU,CAAC,KAAK,CAAC,UAAU,CAAC,CAAA;YAClC,OAAO,IAAI,CAAA;QACb;YACE,OAAO,KAAK,CAAA;IAChB,CAAC;AACH,CAAC"}
+{"version":3,"file":"msaKeys.js","sourceRoot":"","sources":["../../../src/components/msa/msaKeys.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,QAAQ,CACtB,KAAmB,EACnB,EAAE,GAAG,EAAE,QAAQ,EAAsC;IAErD,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,cAAc,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IACpE,MAAM,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,QAAQ,CAAA;IAC/C,MAAM,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,SAAS,CAAA;IAC/C,QAAQ,GAAG,EAAE,CAAC;QACZ,KAAK,WAAW;YACd,KAAK,CAAC,SAAS,CAAC,EAAE,CAAC,CAAA;YACnB,OAAO,IAAI,CAAA;QACb,KAAK,YAAY;YACf,KAAK,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAA;YACpB,OAAO,IAAI,CAAA;QACb,KAAK,SAAS;YACZ,KAAK,CAAC,SAAS,CAAC,EAAE,CAAC,CAAA;YACnB,OAAO,IAAI,CAAA;QACb,KAAK,WAAW;YACd,KAAK,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAA;YACpB,OAAO,IAAI,CAAA;QACb,KAAK,GAAG,CAAC;QACT,KAAK,GAAG;YACN,KAAK,CAAC,MAAM,EAAE,CAAA;YACd,OAAO,IAAI,CAAA;QACb,KAAK,GAAG;YACN,KAAK,CAAC,OAAO,EAAE,CAAA;YACf,OAAO,IAAI,CAAA;QACb,KAAK,MAAM;YACT,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YACnB,OAAO,IAAI,CAAA;QACb,KAAK,KAAK;YACR,KAAK,CAAC,UAAU,CAAC,KAAK,CAAC,UAAU,CAAC,CAAA;YAClC,OAAO,IAAI,CAAA;QACb,KAAK,QAAQ;YACX,IAAI,KAAK,CAAC,SAAS,EAAE,CAAC;gBACpB,KAAK,CAAC,cAAc,EAAE,CAAA;gBACtB,OAAO,IAAI,CAAA;YACb,CAAC;YACD,OAAO,KAAK,CAAA;QACd;YACE,OAAO,KAAK,CAAA;IAChB,CAAC;AACH,CAAC"}

package/dist/components/msa/msaRaster.js

@@ -200,6 +200,7 @@ function rasterKeys(model, theme) {
         model.columns,
         model.leaves,
         model.colorSchemeName,
+        model.customColorScheme,
         tileColorTable(model),
         model.relativeTo,
         theme.palette.action.hover,

package/dist/components/msa/msaRaster.js.map

@@ -1 +1 @@
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package/dist/components/msa/renderHighlights.d.ts

@@ -54,11 +54,22 @@ export declare function renderHighlights({ ctx, model, theme, offsetX, offsetY,
     width: number;
     height: number;
 }): void;
+/**
+ * The selected block, a bordered band per run of consecutive selected rows,
+ * culled to the rows this block covers
+ */
+export declare function renderSelection({ ctx, model, offsetX, offsetY, height, }: {
+    ctx: RenderCtx;
+    model: MsaViewModel;
+    offsetX: number;
+    offsetY: number;
+    height: number;
+}): void;
 /**
  * The overlay parts that come from the snapshot: the reference row's tint, a
- * bordered band per run of highlighted columns, and the `highlights` layer. The
- * live overlay draws these under its hover and click bands; the SVG export
- * draws only these.
+ * bordered band per run of highlighted columns, the `highlights` layer and the
+ * selected block. The live overlay draws these under its hover and click
+ * bands; the SVG export draws only these.
  */
 export declare function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }: {
     ctx: RenderCtx;

package/dist/components/msa/renderHighlights.js

@@ -1,5 +1,5 @@
 import { setFontSize } from '../../setFontSize.js';
-import { referenceColor } from '../overlayColors.js';
+import { referenceColor, selectionBorder, selectionFill, } from '../overlayColors.js';
 // a fill plus a solid border; the hover wash alone is invisible over clustalx
 // coloring
 export const highlightFill = 'rgba(255,140,0,0.28)';
@@ -111,11 +111,35 @@ export function renderHighlights({ ctx, model, theme, offsetX, offsetY, width, h
         }
     }
 }
+/**
+ * The selected block, a bordered band per run of consecutive selected rows,
+ * culled to the rows this block covers
+ */
+export function renderSelection({ ctx, model, offsetX, offsetY, height, }) {
+    const { resolvedSelection, colWidth, rowHeight } = model;
+    if (!resolvedSelection) {
+        return;
+    }
+    const { startCol, endCol, rowRuns } = resolvedSelection;
+    const x = startCol * colWidth - offsetX;
+    const w = (endCol - startCol + 1) * colWidth;
+    ctx.lineWidth = 1;
+    for (const [first, last] of rowRuns) {
+        const y = first * rowHeight - offsetY;
+        const h = (last - first + 1) * rowHeight;
+        if (y < height && y + h > 0) {
+            ctx.fillStyle = selectionFill;
+            ctx.fillRect(x, y, w, h);
+            ctx.strokeStyle = selectionBorder;
+            ctx.strokeRect(x, y, w, h);
+        }
+    }
+}
 /**
  * The overlay parts that come from the snapshot: the reference row's tint, a
- * bordered band per run of highlighted columns, and the `highlights` layer. The
- * live overlay draws these under its hover and click bands; the SVG export
- * draws only these.
+ * bordered band per run of highlighted columns, the `highlights` layer and the
+ * selected block. The live overlay draws these under its hover and click
+ * bands; the SVG export draws only these.
  */
 export function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY, width, height, }) {
     const { colWidth, rowHeight, referenceRowIndex, highlightedColumnRuns } = model;
@@ -133,5 +157,6 @@ export function renderPersistentHighlights({ ctx, model, theme, offsetX, offsetY
         ctx.strokeRect(x, 0, w, height);
     }
     renderHighlights({ ctx, model, theme, offsetX, offsetY, width, height });
+    renderSelection({ ctx, model, offsetX, offsetY, height });
 }
 //# sourceMappingURL=renderHighlights.js.map

package/dist/components/msa/renderHighlights.js.map

@@ -1 +1 @@
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+{"version":3,"file":"renderHighlights.js","sourceRoot":"","sources":["../../../src/components/msa/renderHighlights.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAA;AAClD,OAAO,EACL,cAAc,EACd,eAAe,EACf,aAAa,GACd,MAAM,qBAAqB,CAAA;AAM5B,8EAA8E;AAC9E,WAAW;AACX,MAAM,CAAC,MAAM,aAAa,GAAG,sBAAsB,CAAA;AACnD,MAAM,CAAC,MAAM,eAAe,GAAG,qBAAqB,CAAA;AACpD,MAAM,CAAC,MAAM,gBAAgB,GAAG,sBAAsB,CAAA;AAEtD,MAAM,CAAC,MAAM,aAAa,GAAG,EAAE,CAAA;AAC/B,MAAM,QAAQ,GAAG,CAAC,CAAA;AAClB,6EAA6E;AAC7E,qBAAqB;AACrB,MAAM,CAAC,MAAM,oBAAoB,GAAG,aAAa,GAAG,QAAQ,GAAG,CAAC,CAAA;AAShE;;;;;;;GAOG;AACH,MAAM,UAAU,kBAAkB,CAAC,EACjC,GAAG,EACH,KAAK,EACL,KAAK,EACL,CAAC,EACD,CAAC,EACD,SAAS,EACT,MAAM,EACN,MAAM,GAUP;IACC,WAAW,CAAC,GAAG,EAAE,aAAa,CAAC,CAAA;IAC/B,GAAG,CAAC,SAAS,GAAG,OAAO,CAAA;IACvB,MAAM,QAAQ,GAAG,GAAG,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,KAAK,GAAG,QAAQ,GAAG,CAAC,CAAA;IAC5D,MAAM,SAAS,GAAG,oBAAoB,CAAA;IACtC,IAAI,IAAI,GAAG,QAAQ,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,SAAS,GAAG,CAAC,CAAA;IACxD,IAAI,MAAM,EAAE,CAAC;QACX,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,MAAM,CAAC,GAAG,GAAG,QAAQ,CAAC,CAAC,CAAA;IACpE,CAAC;IACD,IAAI,GAAG,GAAG,CAAC,CAAA;IACX,IAAI,MAAM,EAAE,CAAC;QACX,MAAM,QAAQ,GAAG,CAAC,GAAa,EAAE,EAAE,CACjC,GAAG,CAAC,IAAI,GAAG,IAAI,GAAG,QAAQ;YAC1B,GAAG,CAAC,KAAK,GAAG,IAAI;YAChB,GAAG,CAAC,GAAG,GAAG,GAAG,GAAG,SAAS;YACzB,GAAG,CAAC,MAAM,GAAG,GAAG,CAAA;QAClB,OAAO,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC7B,GAAG,IAAI,SAAS,CAAA;QAClB,CAAC;QACD,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,GAAG,QAAQ,EAAE,GAAG,EAAE,MAAM,EAAE,GAAG,GAAG,SAAS,EAAE,CAAC,CAAA;IAC7E,CAAC;IACD,GAAG,CAAC,SAAS,GAAG,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,CAAA;IAC9C,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,GAAG,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;IAC5C,GAAG,CAAC,SAAS,GAAG,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAA;IAC1C,GAAG,CAAC,QAAQ,CAAC,KAAK,EAAE,IAAI,GAAG,QAAQ,EAAE,GAAG,GAAG,QAAQ,GAAG,aAAa,GAAG,CAAC,CAAC,CAAA;AAC1E,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,gBAAgB,CAAC,EAC/B,GAAG,EACH,KAAK,EACL,KAAK,EACL,OAAO,EACP,OAAO,EACP,KAAK,EACL,MAAM,GASP;IACC,MAAM,EAAE,cAAc,EAAE,kBAAkB,EAAE,QAAQ,EAAE,QAAQ,EAAE,SAAS,EAAE,GACzE,KAAK,CAAA;IACP,MAAM,MAAM,GAAe,EAAE,CAAA;IAC7B,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;IACjB,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,SAAS,CAAC,CAAC,CAAA;IAC7D,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,OAAO,GAAG,MAAM,CAAC,GAAG,SAAS,CAAC,CAAA;IACzD,MAAM,OAAO,GAAG,CAAC,KAAa,EAAE,EAAE;QAChC,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,KAAK,GAAG,SAAS,GAAG,OAAO,EAAE,KAAK,EAAE,SAAS,CAAC,CAAA;IAChE,CAAC,CAAA;IACD,KAAK,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,IAAI,cAAc,EAAE,CAAC;QACnD,IAAI,IAAI,KAAK,WAAW,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,QAAQ,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,OAAO,EAAE,CAAC;YACtE,GAAG,CAAC,SAAS,GAAG,KAAK,CAAA;YACrB,GAAG,CAAC,QAAQ,CACV,CAAC,EACD,IAAI,CAAC,CAAC,CAAC,GAAG,SAAS,GAAG,OAAO,EAC7B,KAAK,EACL,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,SAAS,CACpC,CAAA;QACH,CAAC;IACH,CAAC;IACD,IAAI,QAAQ,EAAE,CAAC;QACb,KACE,IAAI,KAAK,GAAG,QAAQ,EACpB,KAAK,IAAI,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,EAC/C,KAAK,EAAE,EACP,CAAC;YACD,MAAM,KAAK,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;YAC7B,IAAI,KAAK,EAAE,CAAC;gBACV,GAAG,CAAC,SAAS,GAAG,KAAK,CAAA;gBACrB,OAAO,CAAC,KAAK,CAAC,CAAA;YAChB,CAAC;QACH,CAAC;IACH,CAAC;IACD,KAAK,MAAM,EAAE,UAAU,EAAE,KAAK,EAAE,IAAI,kBAAkB,EAAE,CAAC;QACvD,GAAG,CAAC,SAAS,GAAG,KAAK,IAAI,gBAAgB,CAAA;QACzC,KAAK,MAAM,KAAK,IAAI,UAAU,EAAE,CAAC;YAC/B,IAAI,KAAK,IAAI,QAAQ,IAAI,KAAK,IAAI,OAAO,EAAE,CAAC;gBAC1C,OAAO,CAAC,KAAK,CAAC,CAAA;YAChB,CAAC;QACH,CAAC;IACH,CAAC;IACD,KAAK,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,IAAI,kBAAkB,EAAE,CAAC;QACpE,IAAI,QAAQ,KAAK,SAAS,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACnD,SAAQ;QACV,CAAC;QACD,MAAM,CAAC,GAAG,QAAQ,GAAG,QAAQ,GAAG,OAAO,CAAA;QACvC,MAAM,SAAS,GAAG,CAAC,MAAM,GAAG,QAAQ,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAA;QACpD,GAAG,CAAC,SAAS,GAAG,KAAK,IAAI,aAAa,CAAA;QACtC,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,MAAM,CAAC,CAAA;QACrC,GAAG,CAAC,WAAW,GAAG,KAAK,IAAI,eAAe,CAAA;QAC1C,GAAG,CAAC,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,MAAM,CAAC,CAAA;QACvC,IAAI,KAAK,EAAE,CAAC;YACV,kBAAkB,CAAC;gBACjB,GAAG;gBACH,KAAK;gBACL,KAAK;gBACL,CAAC;gBACD,CAAC,EAAE,CAAC;gBACJ,SAAS;gBACT,MAAM,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE;gBAC9B,MAAM;aACP,CAAC,CAAA;QACJ,CAAC;IACH,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,eAAe,CAAC,EAC9B,GAAG,EACH,KAAK,EACL,OAAO,EACP,OAAO,EACP,MAAM,GAOP;IACC,MAAM,EAAE,iBAAiB,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IACxD,IAAI,CAAC,iBAAiB,EAAE,CAAC;QACvB,OAAM;IACR,CAAC;IACD,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,iBAAiB,CAAA;IACvD,MAAM,CAAC,GAAG,QAAQ,GAAG,QAAQ,GAAG,OAAO,CAAA;IACvC,MAAM,CAAC,GAAG,CAAC,MAAM,GAAG,QAAQ,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAA;IAC5C,GAAG,CAAC,SAAS,GAAG,CAAC,CAAA;IACjB,KAAK,MAAM,CAAC,KAAK,EAAE,IAAI,CAAC,IAAI,OAAO,EAAE,CAAC;QACpC,MAAM,CAAC,GAAG,KAAK,GAAG,SAAS,GAAG,OAAO,CAAA;QACrC,MAAM,CAAC,GAAG,CAAC,IAAI,GAAG,KAAK,GAAG,CAAC,CAAC,GAAG,SAAS,CAAA;QACxC,IAAI,CAAC,GAAG,MAAM,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;YAC5B,GAAG,CAAC,SAAS,GAAG,a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package/dist/components/msa/tileColor.js

@@ -2,12 +2,12 @@
 // only the active scheme's column table leaves the other per-column table
 // uncomputed.
 export function tileColorFn(model) {
-    const { colorSchemeName } = model;
-    if (colorSchemeName === 'clustalx_protein_dynamic') {
+    const { dynamicColorSchemeName } = model;
+    if (dynamicColorSchemeName === 'clustalx_protein_dynamic') {
         const { colClustalX } = model;
         return (col, letter) => colClustalX[col][letter];
     }
-    if (colorSchemeName === 'percent_identity_dynamic') {
+    if (dynamicColorSchemeName === 'percent_identity_dynamic') {
         const { colConsensus } = model;
         return (col, letter) => {
             const consensus = colConsensus[col];
@@ -17,14 +17,15 @@ export function tileColorFn(model) {
     const { colorScheme } = model;
     return (_col, letter) => colorScheme[letter];
 }
-// The column table the active scheme colors from, or undefined for the static
-// schemes. A cache of rendered colors keys on its identity plus the scheme name.
+// The table the active scheme colors from: a dynamic scheme's per-column table,
+// or the letter table of a static scheme or a `customColorScheme` map. A cache
+// of rendered colors keys on its identity plus the scheme name.
 export function tileColorTable(model) {
-    const { colorSchemeName } = model;
-    if (colorSchemeName === 'clustalx_protein_dynamic') {
+    const { dynamicColorSchemeName } = model;
+    if (dynamicColorSchemeName === 'clustalx_protein_dynamic') {
         return model.colClustalX;
     }
-    if (colorSchemeName === 'percent_identity_dynamic') {
+    if (dynamicColorSchemeName === 'percent_identity_dynamic') {
         return model.colConsensus;
     }
     return model.colorScheme;

package/dist/components/msa/tileColor.js.map

@@ -1 +1 @@
-{"version":3,"file":"tileColor.js","sourceRoot":"","sources":["../../../src/components/msa/tileColor.ts"],"names":[],"mappings":"AAEA,8EAA8E;AAC9E,0EAA0E;AAC1E,cAAc;AACd,MAAM,UAAU,WAAW,CAAC,KAAmB;IAC7C,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;QAC7B,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,GAAG,CAAE,CAAC,MAAM,CAAC,CAAA;IACnE,CAAC;IACD,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,MAAM,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;QAC9B,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE;YACrC,MAAM,SAAS,GAAG,YAAY,CAAC,GAAG,CAAE,CAAA;YACpC,OAAO,MAAM,KAAK,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAA;QAClE,CAAC,CAAA;IACH,CAAC;IACD,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC7B,OAAO,CAAC,IAAY,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;AAC9D,CAAC;AAED,8EAA8E;AAC9E,iFAAiF;AACjF,MAAM,UAAU,cAAc,CAAC,KAAmB;IAChD,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACjC,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,OAAO,KAAK,CAAC,WAAW,CAAA;IAC1B,CAAC;IACD,IAAI,eAAe,KAAK,0BAA0B,EAAE,CAAC;QACnD,OAAO,KAAK,CAAC,YAAY,CAAA;IAC3B,CAAC;IACD,OAAO,KAAK,CAAC,WAAW,CAAA;AAC1B,CAAC"}
+{"version":3,"file":"tileColor.js","sourceRoot":"","sources":["../../../src/components/msa/tileColor.ts"],"names":[],"mappings":"AAEA,8EAA8E;AAC9E,0EAA0E;AAC1E,cAAc;AACd,MAAM,UAAU,WAAW,CAAC,KAAmB;IAC7C,MAAM,EAAE,sBAAsB,EAAE,GAAG,KAAK,CAAA;IACxC,IAAI,sBAAsB,KAAK,0BAA0B,EAAE,CAAC;QAC1D,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;QAC7B,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,GAAG,CAAE,CAAC,MAAM,CAAC,CAAA;IACnE,CAAC;IACD,IAAI,sBAAsB,KAAK,0BAA0B,EAAE,CAAC;QAC1D,MAAM,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;QAC9B,OAAO,CAAC,GAAW,EAAE,MAAc,EAAE,EAAE;YACrC,MAAM,SAAS,GAAG,YAAY,CAAC,GAAG,CAAE,CAAA;YACpC,OAAO,MAAM,KAAK,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,SAAS,CAAA;QAClE,CAAC,CAAA;IACH,CAAC;IACD,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC7B,OAAO,CAAC,IAAY,EAAE,MAAc,EAAE,EAAE,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;AAC9D,CAAC;AAED,gFAAgF;AAChF,+EAA+E;AAC/E,gEAAgE;AAChE,MAAM,UAAU,cAAc,CAAC,KAAmB;IAChD,MAAM,EAAE,sBAAsB,EAAE,GAAG,KAAK,CAAA;IACxC,IAAI,sBAAsB,KAAK,0BAA0B,EAAE,CAAC;QAC1D,OAAO,KAAK,CAAC,WAAW,CAAA;IAC1B,CAAC;IACD,IAAI,sBAAsB,KAAK,0BAA0B,EAAE,CAAC;QAC1D,OAAO,KAAK,CAAC,YAAY,CAAA;IAC3B,CAAC;IACD,OAAO,KAAK,CAAC,WAAW,CAAA;AAC1B,CAAC"}

package/dist/components/msa/useMsaBlockMouse.d.ts

@@ -17,7 +17,7 @@ export declare function useMsaBlockMouse({ model, offsetX, offsetY, }: {
 }): {
     anchor: import("../useHoverAnchor.ts").HoverAnchor<true> | undefined;
     onMouseMove: (event: React.MouseEvent, el: HTMLElement) => void;
-    onMouseDown: (event: React.MouseEvent) => void;
+    onMouseDown: (event: React.MouseEvent, el: HTMLElement) => void;
     onClick: (event: React.MouseEvent, el: HTMLElement) => void;
     onMouseLeave: () => void;
 };

package/dist/components/msa/useMsaBlockMouse.js

@@ -1,13 +1,6 @@
 import { useRef } from 'react';
+import { dragSelection, maxClickTravel } from '../selectionDrag.js';
 import { useHoverAnchor } from '../useHoverAnchor.js';
-const maxClickTravel = 3;
-function eventToColRow({ event, el, offsetX, offsetY, colWidth, rowHeight, }) {
-    const { left, top } = el.getBoundingClientRect();
-    return {
-        col: Math.floor((event.clientX - left + offsetX) / colWidth),
-        row: Math.floor((event.clientY - top + offsetY) / rowHeight),
-    };
-}
 /**
  * Translates pointer events over one MSA block into model column/row hover and
  * click state, and reports where a tooltip should be anchored.
@@ -21,9 +14,18 @@ function eventToColRow({ event, el, offsetX, offsetY, colWidth, rowHeight, }) {
 export function useMsaBlockMouse({ model, offsetX, offsetY, }) {
     const { anchor, hoverAt, clearAnchor } = useHoverAnchor();
     const downAt = useRef(undefined);
+    // The block's rect places its cells on the page. A drag keeps the mapping
+    // it started with, so each point subtracts the scroll since then.
+    function cellMapper(el) {
+        const { left, top } = el.getBoundingClientRect();
+        const { scrollX, scrollY } = model;
+        return ({ clientX, clientY }) => ({
+            col: Math.floor((clientX - left + offsetX - (model.scrollX - scrollX)) / model.colWidth),
+            row: Math.floor((clientY - top + offsetY - (model.scrollY - scrollY)) / model.rowHeight),
+        });
+    }
     function colRow(event, el) {
-        const { colWidth, rowHeight } = model;
-        return eventToColRow({ event, el, offsetX, offsetY, colWidth, rowHeight });
+        return cellMapper(el)(event);
     }
     // a block can extend past the alignment (the last block is a full tile wide,
     // and the panel is taller than the rows when there are few of them), so a
@@ -38,8 +40,13 @@ export function useMsaBlockMouse({ model, offsetX, offsetY, }) {
         const hasTooltip = !!model.hoveredInsertion || model.mouseOverDomains.length > 0;
         hoverAt(event, hasTooltip || undefined);
     }
-    function onMouseDown(event) {
+    // shift+drag selects a block; MSACanvas leaves a shifted press out of its
+    // pan
+    function onMouseDown(event, el) {
         downAt.current = { x: event.clientX, y: event.clientY };
+        if (event.shiftKey && event.button === 0) {
+            dragSelection(model, event, cellMapper(el));
+        }
     }
     function onClick(event, el) {
         const down = downAt.current;

package/dist/components/msa/useMsaBlockMouse.js.map

@@ -1 +1 @@
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+{"version":3,"file":"useMsaBlockMouse.js","sourceRoot":"","sources":["../../../src/components/msa/useMsaBlockMouse.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAE9B,OAAO,EAAE,aAAa,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAA;AACnE,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAA;AAMrD;;;;;;;;;GASG;AACH,MAAM,UAAU,gBAAgB,CAAC,EAC/B,KAAK,EACL,OAAO,EACP,OAAO,GAKR;IACC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,WAAW,EAAE,GAAG,cAAc,EAAQ,CAAA;IAC/D,MAAM,MAAM,GAAG,MAAM,CAA2B,SAAS,CAAC,CAAA;IAE1D,0EAA0E;IAC1E,kEAAkE;IAClE,SAAS,UAAU,CAAC,EAAe;QACjC,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,qBAAqB,EAAE,CAAA;QAChD,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QAClC,OAAO,CAAC,EAAE,OAAO,EAAE,OAAO,EAAe,EAAE,EAAE,CAAC,CAAC;YAC7C,GAAG,EAAE,IAAI,CAAC,KAAK,CACb,CAAC,OAAO,GAAG,IAAI,GAAG,OAAO,GAAG,CAAC,KAAK,CAAC,OAAO,GAAG,OAAO,CAAC,CAAC,GAAG,KAAK,CAAC,QAAQ,CACxE;YACD,GAAG,EAAE,IAAI,CAAC,KAAK,CACb,CAAC,OAAO,GAAG,GAAG,GAAG,OAAO,GAAG,CAAC,KAAK,CAAC,OAAO,GAAG,OAAO,CAAC,CAAC,GAAG,KAAK,CAAC,SAAS,CACxE;SACF,CAAC,CAAA;IACJ,CAAC;IAED,SAAS,MAAM,CAAC,KAAuB,EAAE,EAAe;QACtD,OAAO,UAAU,CAAC,EAAE,CAAC,CAAC,KAAK,CAAC,CAAA;IAC9B,CAAC;IAED,6EAA6E;IAC7E,0EAA0E;IAC1E,0DAA0D;IAC1D,SAAS,QAAQ,CAAC,EAAE,GAAG,EAAE,GAAG,EAAgC;QAC1D,OAAO,GAAG,IAAI,CAAC,IAAI,GAAG,GAAG,KAAK,CAAC,UAAU,IAAI,GAAG,IAAI,CAAC,IAAI,GAAG,GAAG,KAAK,CAAC,OAAO,CAAA;IAC9E,CAAC;IAED,SAAS,WAAW,CAAC,KAAuB,EAAE,EAAe;QAC3D,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;QAC7B,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAA;QACzB,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAA;QAEvE,MAAM,UAAU,GACd,CAAC,CAAC,KAAK,CAAC,gBAAgB,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,CAAA;QAC/D,OAAO,CAAC,KAAK,EAAE,UAAU,IAAI,SAAS,CAAC,CAAA;IACzC,CAAC;IAED,0EAA0E;IAC1E,MAAM;IACN,SAAS,WAAW,CAAC,KAAuB,EAAE,EAAe;QAC3D,MAAM,CAAC,OAAO,GAAG,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAA;QACvD,IAAI,KAAK,CAAC,QAAQ,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzC,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,EAAE,CAAC,CAAC,CAAA;QAC7C,CAAC;IACH,CAAC;IAED,SAAS,OAAO,CAAC,KAAuB,EAAE,EAAe;QACvD,MAAM,IAAI,GAAG,MAAM,CAAC,OAAO,CAAA;QAC3B,MAAM,CAAC,OAAO,GAAG,SAAS,CAAA;QAC1B,IACE,IAAI;YACJ,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,CAAC,EAAE,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,CAAC,CAAC;gBACxD,cAAc,EAChB,CAAC;YACD,OAAM;QACR,CAAC;QACD,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;QAC7B,MAAM,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,GAAG,CAAA;QACxB,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;QAC9C,wEAAwE;QACxE,0EAA0E;QAC1E,MAAM,IAAI,GAAG,GAAG,KAAK,aAAa,IAAI,GAAG,KAAK,aAAa,CAAA;QAC3D,MAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAA;QACnC,KAAK,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAA;IACxE,CAAC;IAED,SAAS,YAAY;QACnB,KAAK,CAAC,WAAW,EAAE,CAAA;QACnB,WAAW,EAAE,CAAA;IACf,CAAC;IAED,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,OAAO,EAAE,YAAY,EAAE,CAAA;AACpE,CAAC"}

package/dist/components/overlayColors.d.ts

@@ -3,3 +3,5 @@ export declare const treeHoverColor = "rgba(255,165,0,0.2)";
 export declare const multiRowHoverColor = "rgba(255,165,0,0.15)";
 export declare const hoverColor = "rgba(0,0,0,0.15)";
 export declare const clickColor = "rgba(128,128,0,0.2)";
+export declare const selectionFill = "rgba(25,118,210,0.22)";
+export declare const selectionBorder = "rgba(25,118,210,0.95)";

package/dist/components/overlayColors.js

@@ -13,4 +13,7 @@ export const multiRowHoverColor = 'rgba(255,165,0,0.15)';
 // match or the crosshair appears to change color as it crosses the tracks.
 export const hoverColor = 'rgba(0,0,0,0.15)';
 export const clickColor = 'rgba(128,128,0,0.2)';
+// the selected block, a blue that reads apart from the orange highlights
+export const selectionFill = 'rgba(25,118,210,0.22)';
+export const selectionBorder = 'rgba(25,118,210,0.95)';
 //# sourceMappingURL=overlayColors.js.map

package/dist/components/overlayColors.js.map

@@ -1 +1 @@
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+{"version":3,"file":"overlayColors.js","sourceRoot":"","sources":["../../src/components/overlayColors.ts"],"names":[],"mappings":"AAAA,iFAAiF;AACjF,gFAAgF;AAChF,gEAAgE;AAEhE,yEAAyE;AACzE,MAAM,CAAC,MAAM,cAAc,GAAG,qBAAqB,CAAA;AAEnD,+EAA+E;AAC/E,8EAA8E;AAC9E,gFAAgF;AAChF,MAAM,CAAC,MAAM,cAAc,GAAG,qBAAqB,CAAA;AACnD,MAAM,CAAC,MAAM,kBAAkB,GAAG,sBAAsB,CAAA;AAExD,gFAAgF;AAChF,4EAA4E;AAC5E,2EAA2E;AAC3E,MAAM,CAAC,MAAM,UAAU,GAAG,kBAAkB,CAAA;AAC5C,MAAM,CAAC,MAAM,UAAU,GAAG,qBAAqB,CAAA;AAE/C,yEAAyE;AACzE,MAAM,CAAC,MAAM,aAAa,GAAG,uBAAuB,CAAA;AACpD,MAAM,CAAC,MAAM,eAAe,GAAG,uBAAuB,CAAA"}

package/dist/components/selectionDrag.d.ts

@@ -0,0 +1,17 @@
+import type { MsaViewModel } from '../model.ts';
+export declare const maxClickTravel = 3;
+export interface ClientPoint {
+    clientX: number;
+    clientY: number;
+}
+/**
+ * Follows a press through the window until its release, selecting the block
+ * between the cell it started on and the cell under the pointer. The selection
+ * starts once the pointer travels past `maxClickTravel`, so a press that stays
+ * put reaches the click handlers unchanged. `cellAt` maps a client point to a
+ * visible column and row index, or a column alone to select across every row.
+ */
+export declare function dragSelection(model: MsaViewModel, start: ClientPoint, cellAt: (point: ClientPoint) => {
+    col: number;
+    row?: number;
+}): void;

package/dist/components/selectionDrag.js

@@ -0,0 +1,30 @@
+import { isAlive } from '@jbrowse/mobx-state-tree';
+// a press that travels further than this, in px, is a drag and not a click
+export const maxClickTravel = 3;
+/**
+ * Follows a press through the window until its release, selecting the block
+ * between the cell it started on and the cell under the pointer. The selection
+ * starts once the pointer travels past `maxClickTravel`, so a press that stays
+ * put reaches the click handlers unchanged. `cellAt` maps a client point to a
+ * visible column and row index, or a column alone to select across every row.
+ */
+export function dragSelection(model, start, cellAt) {
+    const anchor = cellAt(start);
+    const { clientX, clientY } = start;
+    let dragging = false;
+    function onMove(event) {
+        dragging ||=
+            Math.hypot(event.clientX - clientX, event.clientY - clientY) >
+                maxClickTravel;
+        if (dragging && isAlive(model)) {
+            model.selectBlock(anchor, cellAt(event));
+        }
+    }
+    function onUp() {
+        window.removeEventListener('mousemove', onMove);
+        window.removeEventListener('mouseup', onUp);
+    }
+    window.addEventListener('mousemove', onMove);
+    window.addEventListener('mouseup', onUp);
+}
+//# sourceMappingURL=selectionDrag.js.map

package/dist/components/selectionDrag.js.map

@@ -0,0 +1 @@
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package/dist/components/tracks/useTrackHover.d.ts

@@ -3,7 +3,8 @@ import type React from 'react';
 /**
  * Translates pointer events over a track's row into the hovered column and a
  * tooltip anchor. The track shares the alignment's columns, so hovering it sets
- * the model's mouse column too and the alignment's hover band follows along.
+ * the model's mouse column too and the alignment's hover band follows along. A
+ * drag along the row selects the columns it covers across every row.
  *
  * `tooltip` off skips the anchor, so a track whose tooltip is turned off still
  * drives the hover band without re-rendering on every mouse move.
@@ -14,5 +15,6 @@ export declare function useTrackHover({ model, tooltip, }: {
 }): {
     anchor: import("../useHoverAnchor.ts").HoverAnchor<number> | undefined;
     onMouseMove: (event: React.MouseEvent, el: HTMLElement) => void;
+    onMouseDown: (event: React.MouseEvent, el: HTMLElement) => void;
     onMouseLeave: () => void;
 };