react-msaview 8.3.0 → 8.4.1

package/dist/svgTestUtil.d.ts

@@ -14,12 +14,13 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     showTreeOverview: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     overviewHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
     autoTreeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-}, "bgColor" | "colorSchemeName" | "msaFormat" | "showColumnStats"> & {
+}, "bgColor" | "colorSchemeName" | "customColorScheme" | "msaFormat" | "showColumnStats"> & {
     bgColor: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     colorSchemeName: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    customColorScheme: import("@jbrowse/mobx-state-tree").IType<Record<string, string> | undefined, Record<string, string> | undefined, Record<string, string> | undefined>;
     showColumnStats: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     msaFormat: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<import("msa-parsers").MSAFormat>>;
-}, "allowedGappyness" | "clades" | "colWidth" | "collapsed" | "columnTracks" | "currentAlignment" | "data" | "drawMsaLetters" | "encodings" | "gffFilehandle" | "height" | "hideGaps" | "highlightColumns" | "highlights" | "id" | "msaFilehandle" | "region" | "relativeTo" | "residueMappings" | "rotated" | "rowHeight" | "rowPanels" | "scrollX" | "scrollY" | "scrollZoom" | "scrollZoomAxis" | "showDomainLegend" | "showDomains" | "showOnly" | "subFeatureRows" | "trackHeights" | "treeFilehandle" | "treeMetadataFilehandle" | "treeRoot" | "turnedOffFeatures" | "turnedOffTracks" | "type"> & {
+}, "allowedGappyness" | "clades" | "colWidth" | "collapsed" | "columnTracks" | "currentAlignment" | "data" | "drawMsaLetters" | "encodings" | "features" | "gffFilehandle" | "height" | "hideGaps" | "highlightColumns" | "highlights" | "id" | "msaFilehandle" | "region" | "relativeTo" | "residueMappings" | "rotated" | "rowHeight" | "rowPanels" | "scrollX" | "scrollY" | "scrollZoom" | "scrollZoomAxis" | "selection" | "showDomainLegend" | "showDomains" | "showOnly" | "subFeatureRows" | "trackHeights" | "treeFilehandle" | "treeMetadataFilehandle" | "treeRoot" | "turnedOffFeatures" | "turnedOffTracks" | "type"> & {
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
     showDomains: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     showDomainLegend: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
@@ -56,14 +57,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             authInfo: any;
         }> | undefined;
     }>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -74,41 +75,27 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }> | undefined;
-    }, ({
-        blobId: string;
-        locationType: "BlobLocation";
-        name: string;
-    } & Partial<{
-        locationType: "BlobLocation";
-        name: string;
-        blobId: string;
-    }>) | ({
-        handleId: string;
-        locationType: "FileHandleLocation";
-        name: string;
-    } & Partial<{
-        locationType: "FileHandleLocation";
-        name: string;
-        handleId: string;
-    }>) | ({
-        localPath: string;
-        locationType: "LocalPathLocation";
-    } & Partial<{
-        locationType: "LocalPathLocation";
-        localPath: string;
-    }>) | ({
-        locationType: "UriLocation";
-        uri: string;
-    } & Partial<{
-        locationType: "UriLocation";
-        uri: string;
-        baseUri: string | undefined;
-        internetAccountId: string | undefined;
-        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
-            internetAccountType: string;
-            authInfo: any;
-        }> | undefined;
-    }>)>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+    }, import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
+        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"UriLocation">;
+        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
+            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }>>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
         locationType: "LocalPathLocation";
         localPath: string;
     }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
@@ -150,14 +137,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             authInfo: any;
         }> | undefined;
     }>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -168,41 +155,27 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }> | undefined;
-    }, ({
-        blobId: string;
-        locationType: "BlobLocation";
-        name: string;
-    } & Partial<{
-        locationType: "BlobLocation";
-        name: string;
-        blobId: string;
-    }>) | ({
-        handleId: string;
-        locationType: "FileHandleLocation";
-        name: string;
-    } & Partial<{
-        locationType: "FileHandleLocation";
-        name: string;
-        handleId: string;
-    }>) | ({
-        localPath: string;
-        locationType: "LocalPathLocation";
-    } & Partial<{
-        locationType: "LocalPathLocation";
-        localPath: string;
-    }>) | ({
-        locationType: "UriLocation";
-        uri: string;
-    } & Partial<{
-        locationType: "UriLocation";
-        uri: string;
-        baseUri: string | undefined;
-        internetAccountId: string | undefined;
-        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
-            internetAccountType: string;
-            authInfo: any;
-        }> | undefined;
-    }>)>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+    }, import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
+        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"UriLocation">;
+        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
+            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }>>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
         locationType: "LocalPathLocation";
         localPath: string;
     }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
@@ -244,14 +217,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             authInfo: any;
         }> | undefined;
     }>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -262,41 +235,27 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }> | undefined;
-    }, ({
-        blobId: string;
-        locationType: "BlobLocation";
-        name: string;
-    } & Partial<{
-        locationType: "BlobLocation";
-        name: string;
-        blobId: string;
-    }>) | ({
-        handleId: string;
-        locationType: "FileHandleLocation";
-        name: string;
-    } & Partial<{
-        locationType: "FileHandleLocation";
-        name: string;
-        handleId: string;
-    }>) | ({
-        localPath: string;
-        locationType: "LocalPathLocation";
-    } & Partial<{
-        locationType: "LocalPathLocation";
-        localPath: string;
-    }>) | ({
-        locationType: "UriLocation";
-        uri: string;
-    } & Partial<{
-        locationType: "UriLocation";
-        uri: string;
-        baseUri: string | undefined;
-        internetAccountId: string | undefined;
-        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
-            internetAccountType: string;
-            authInfo: any;
-        }> | undefined;
-    }>)>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+    }, import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
+        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"UriLocation">;
+        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
+            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }>>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
         locationType: "LocalPathLocation";
         localPath: string;
     }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
@@ -338,14 +297,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             authInfo: any;
         }> | undefined;
     }>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -356,41 +315,27 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }> | undefined;
-    }, ({
-        blobId: string;
-        locationType: "BlobLocation";
-        name: string;
-    } & Partial<{
-        locationType: "BlobLocation";
-        name: string;
-        blobId: string;
-    }>) | ({
-        handleId: string;
-        locationType: "FileHandleLocation";
-        name: string;
-    } & Partial<{
-        locationType: "FileHandleLocation";
-        name: string;
-        handleId: string;
-    }>) | ({
-        localPath: string;
-        locationType: "LocalPathLocation";
-    } & Partial<{
-        locationType: "LocalPathLocation";
-        localPath: string;
-    }>) | ({
-        locationType: "UriLocation";
-        uri: string;
-    } & Partial<{
-        locationType: "UriLocation";
-        uri: string;
-        baseUri: string | undefined;
-        internetAccountId: string | undefined;
-        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
-            internetAccountType: string;
-            authInfo: any;
-        }> | undefined;
-    }>)>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+    }, import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
+        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"UriLocation">;
+        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
+            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }>>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
         locationType: "LocalPathLocation";
         localPath: string;
     }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
@@ -437,6 +382,8 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     relativeTo: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
     highlightColumns: import("@jbrowse/mobx-state-tree").IType<number[] | undefined, number[] | undefined, number[] | undefined>;
     highlights: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Highlight, import("./types.ts").Highlight, import("./types.ts").Highlight>>, [undefined]>;
+    features: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Feature, import("./types.ts").Feature, import("./types.ts").Feature>>, [undefined]>;
+    selection: import("@jbrowse/mobx-state-tree").IType<import("./types.ts").MsaSelection | undefined, import("./types.ts").MsaSelection | undefined, import("./types.ts").MsaSelection | undefined>;
     region: import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Region | undefined, import("./types.ts").Region | undefined, import("./types.ts").Region | undefined>;
     clades: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Clade, import("./types.ts").Clade, import("./types.ts").Clade>>, [undefined]>;
     encodings: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Encoding, import("./types.ts").Encoding, import("./types.ts").Encoding>>, [undefined]>;
@@ -464,6 +411,7 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     setDrawLabels(arg: boolean): void;
 } & {
     setColorSchemeName(name: string): void;
+    setCustomColorScheme(map?: Record<string, string>): void;
     setBgColor(arg: boolean): void;
     setShowColumnStats(arg: boolean): void;
     setMSAFormat(arg?: import("msa-parsers").MSAFormat): void;
@@ -514,6 +462,9 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     setHighlightedColumns(columns?: number[]): void;
     setRegion(region?: import("./types.ts").Region): void;
     setHighlights(highlights: import("./types.ts").Highlight[]): void;
+    setFeatures(features: import("./types.ts").Feature[]): void;
+    setSelection(selection?: import("./types.ts").MsaSelection): void;
+    clearSelection(): void;
     setClades(clades: import("./types.ts").Clade[]): void;
     applyHighlight(owner: string, highlights: import("./types.ts").Highlight[]): void;
     clearHighlight(owner: string): void;
@@ -542,16 +493,18 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     setMSA(result: string): void;
     setTree(result: string): void;
     setTreeMetadata(result: string): void;
-    setGFF(result: string): void;
+    setGFF(result?: string): void;
 } & {
     readonly hideGapsEffective: boolean;
     readonly realAllowedGappyness: number;
+    readonly allAnnotations: import("msa-parsers").Annotation[];
     readonly actuallyShowDomains: boolean;
     readonly hostRestoresData: boolean;
     readonly viewInitialized: boolean;
     readonly width: number;
 } & {
     readonly colorScheme: Record<string, string>;
+    readonly dynamicColorSchemeName: string | undefined;
     readonly header: Record<string, unknown> | {
         info: string;
         version: string | undefined;
@@ -741,7 +694,7 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     doScrollX(deltaX: number): void;
     setScrollX(n: number): void;
     setColumnTracks(tracks: import("./types.ts").ColumnTrackSpec[]): void;
-    setRowData(rowData: Record<string, Record<string, string>>): void;
+    setRowData(rowData: import("./types.ts").RowDataInput): void;
     setEncodings(encodings: import("./types.ts").Encoding[]): void;
     setRowPanels(panels: import("./types.ts").RowPanelSpec[]): void;
     setResidueMappings(mappings: import("./types.ts").ResidueMapping[]): void;
@@ -781,6 +734,16 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     }[];
     fillHighlightLabel(label: string, row?: string, start?: number): string;
     readonly resolvedHighlights: import("./types.ts").ResolvedHighlight[];
+    readonly resolvedSelection: import("./types.ts").ResolvedSelection | undefined;
+    readonly selectionSize: {
+        columns: number;
+        rows: number;
+    } | undefined;
+    readonly selectionFileSpan: {
+        start: number;
+        end: number;
+    } | undefined;
+    readonly selectionFasta: string;
     columnStatsAt(col: number): import("./columnStats.ts").ColumnStats | undefined;
     getRowData(name: string): {
         data: {
@@ -828,6 +791,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     fit(): void;
     fitVertically(): void;
     zoomToRegion(region: import("./types.ts").Region): void;
+    zoomToSelection(): void;
+    selectBlock(anchor: {
+        col: number;
+        row?: number;
+    }, head: {
+        col: number;
+        row?: number;
+    }): void;
     fitHorizontally(): void;
     afterCreate(): void;
 } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<Omit<Omit<Omit<{}, "autoTreeAreaWidth" | "drawLabels" | "drawNodeBubbles" | "drawNodeLabels" | "drawTree" | "labelsAlignRight" | "overviewHeight" | "showBranchLen" | "showTreeOverview" | "treeAreaWidth" | "treeOrder" | "treeWidth"> & {
@@ -843,12 +814,13 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     showTreeOverview: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     overviewHeight: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
     autoTreeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-}, "bgColor" | "colorSchemeName" | "msaFormat" | "showColumnStats"> & {
+}, "bgColor" | "colorSchemeName" | "customColorScheme" | "msaFormat" | "showColumnStats"> & {
     bgColor: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     colorSchemeName: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
+    customColorScheme: import("@jbrowse/mobx-state-tree").IType<Record<string, string> | undefined, Record<string, string> | undefined, Record<string, string> | undefined>;
     showColumnStats: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     msaFormat: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<import("msa-parsers").MSAFormat>>;
-}, "allowedGappyness" | "clades" | "colWidth" | "collapsed" | "columnTracks" | "currentAlignment" | "data" | "drawMsaLetters" | "encodings" | "gffFilehandle" | "height" | "hideGaps" | "highlightColumns" | "highlights" | "id" | "msaFilehandle" | "region" | "relativeTo" | "residueMappings" | "rotated" | "rowHeight" | "rowPanels" | "scrollX" | "scrollY" | "scrollZoom" | "scrollZoomAxis" | "showDomainLegend" | "showDomains" | "showOnly" | "subFeatureRows" | "trackHeights" | "treeFilehandle" | "treeMetadataFilehandle" | "treeRoot" | "turnedOffFeatures" | "turnedOffTracks" | "type"> & {
+}, "allowedGappyness" | "clades" | "colWidth" | "collapsed" | "columnTracks" | "currentAlignment" | "data" | "drawMsaLetters" | "encodings" | "features" | "gffFilehandle" | "height" | "hideGaps" | "highlightColumns" | "highlights" | "id" | "msaFilehandle" | "region" | "relativeTo" | "residueMappings" | "rotated" | "rowHeight" | "rowPanels" | "scrollX" | "scrollY" | "scrollZoom" | "scrollZoomAxis" | "selection" | "showDomainLegend" | "showDomains" | "showOnly" | "subFeatureRows" | "trackHeights" | "treeFilehandle" | "treeMetadataFilehandle" | "treeRoot" | "turnedOffFeatures" | "turnedOffTracks" | "type"> & {
     id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
     showDomains: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
     showDomainLegend: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
@@ -885,14 +857,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             authInfo: any;
         }> | undefined;
     }>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -903,41 +875,27 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }> | undefined;
-    }, ({
-        blobId: string;
-        locationType: "BlobLocation";
-        name: string;
-    } & Partial<{
-        locationType: "BlobLocation";
-        name: string;
-        blobId: string;
-    }>) | ({
-        handleId: string;
-        locationType: "FileHandleLocation";
-        name: string;
-    } & Partial<{
-        locationType: "FileHandleLocation";
-        name: string;
-        handleId: string;
-    }>) | ({
-        localPath: string;
-        locationType: "LocalPathLocation";
-    } & Partial<{
-        locationType: "LocalPathLocation";
-        localPath: string;
-    }>) | ({
-        locationType: "UriLocation";
-        uri: string;
-    } & Partial<{
-        locationType: "UriLocation";
-        uri: string;
-        baseUri: string | undefined;
-        internetAccountId: string | undefined;
-        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
-            internetAccountType: string;
-            authInfo: any;
-        }> | undefined;
-    }>)>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+    }, import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
+        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"UriLocation">;
+        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
+            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }>>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
         locationType: "LocalPathLocation";
         localPath: string;
     }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
@@ -979,14 +937,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             authInfo: any;
         }> | undefined;
     }>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -997,41 +955,27 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }> | undefined;
-    }, ({
-        blobId: string;
-        locationType: "BlobLocation";
-        name: string;
-    } & Partial<{
-        locationType: "BlobLocation";
-        name: string;
-        blobId: string;
-    }>) | ({
-        handleId: string;
-        locationType: "FileHandleLocation";
-        name: string;
-    } & Partial<{
-        locationType: "FileHandleLocation";
-        name: string;
-        handleId: string;
-    }>) | ({
-        localPath: string;
-        locationType: "LocalPathLocation";
-    } & Partial<{
-        locationType: "LocalPathLocation";
-        localPath: string;
-    }>) | ({
-        locationType: "UriLocation";
-        uri: string;
-    } & Partial<{
-        locationType: "UriLocation";
-        uri: string;
-        baseUri: string | undefined;
-        internetAccountId: string | undefined;
-        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
-            internetAccountType: string;
-            authInfo: any;
-        }> | undefined;
-    }>)>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+    }, import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
+        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"UriLocation">;
+        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
+            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }>>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
         locationType: "LocalPathLocation";
         localPath: string;
     }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
@@ -1073,14 +1017,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             authInfo: any;
         }> | undefined;
     }>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1091,41 +1035,27 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }> | undefined;
-    }, ({
-        blobId: string;
-        locationType: "BlobLocation";
-        name: string;
-    } & Partial<{
-        locationType: "BlobLocation";
-        name: string;
-        blobId: string;
-    }>) | ({
-        handleId: string;
-        locationType: "FileHandleLocation";
-        name: string;
-    } & Partial<{
-        locationType: "FileHandleLocation";
-        name: string;
-        handleId: string;
-    }>) | ({
-        localPath: string;
-        locationType: "LocalPathLocation";
-    } & Partial<{
-        locationType: "LocalPathLocation";
-        localPath: string;
-    }>) | ({
-        locationType: "UriLocation";
-        uri: string;
-    } & Partial<{
-        locationType: "UriLocation";
-        uri: string;
-        baseUri: string | undefined;
-        internetAccountId: string | undefined;
-        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
-            internetAccountType: string;
-            authInfo: any;
-        }> | undefined;
-    }>)>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+    }, import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
+        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"UriLocation">;
+        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
+            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }>>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
         locationType: "LocalPathLocation";
         localPath: string;
     }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
@@ -1167,14 +1097,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             authInfo: any;
         }> | undefined;
     }>, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1185,41 +1115,27 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
             internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
             authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
         }> | undefined;
-    }, ({
-        blobId: string;
-        locationType: "BlobLocation";
-        name: string;
-    } & Partial<{
-        locationType: "BlobLocation";
-        name: string;
-        blobId: string;
-    }>) | ({
-        handleId: string;
-        locationType: "FileHandleLocation";
-        name: string;
-    } & Partial<{
-        locationType: "FileHandleLocation";
-        name: string;
-        handleId: string;
-    }>) | ({
-        localPath: string;
-        locationType: "LocalPathLocation";
-    } & Partial<{
-        locationType: "LocalPathLocation";
-        localPath: string;
-    }>) | ({
-        locationType: "UriLocation";
-        uri: string;
-    } & Partial<{
-        locationType: "UriLocation";
-        uri: string;
-        baseUri: string | undefined;
-        internetAccountId: string | undefined;
-        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").ModelCreationType<{
-            internetAccountType: string;
-            authInfo: any;
-        }> | undefined;
-    }>)>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
+    }, import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
+        localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
+        name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+    }> | import("@jbrowse/mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"UriLocation">;
+        uri: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        baseUri: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
+            internetAccountType: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+            authInfo: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
+        }, {}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
+    }>>, import("@jbrowse/core/util/types/mst").LegacyFileLocation | import("@jbrowse/mobx-state-tree").ModelCreationType<{
         locationType: "LocalPathLocation";
         localPath: string;
     }> | import("@jbrowse/mobx-state-tree").ModelCreationType<{
@@ -1266,6 +1182,8 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     relativeTo: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
     highlightColumns: import("@jbrowse/mobx-state-tree").IType<number[] | undefined, number[] | undefined, number[] | undefined>;
     highlights: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Highlight, import("./types.ts").Highlight, import("./types.ts").Highlight>>, [undefined]>;
+    features: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Feature, import("./types.ts").Feature, import("./types.ts").Feature>>, [undefined]>;
+    selection: import("@jbrowse/mobx-state-tree").IType<import("./types.ts").MsaSelection | undefined, import("./types.ts").MsaSelection | undefined, import("./types.ts").MsaSelection | undefined>;
     region: import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Region | undefined, import("./types.ts").Region | undefined, import("./types.ts").Region | undefined>;
     clades: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Clade, import("./types.ts").Clade, import("./types.ts").Clade>>, [undefined]>;
     encodings: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<import("./types.ts").Encoding, import("./types.ts").Encoding, import("./types.ts").Encoding>>, [undefined]>;
@@ -1293,6 +1211,7 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     setDrawLabels(arg: boolean): void;
 } & {
     setColorSchemeName(name: string): void;
+    setCustomColorScheme(map?: Record<string, string>): void;
     setBgColor(arg: boolean): void;
     setShowColumnStats(arg: boolean): void;
     setMSAFormat(arg?: import("msa-parsers").MSAFormat): void;
@@ -1343,6 +1262,9 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     setHighlightedColumns(columns?: number[]): void;
     setRegion(region?: import("./types.ts").Region): void;
     setHighlights(highlights: import("./types.ts").Highlight[]): void;
+    setFeatures(features: import("./types.ts").Feature[]): void;
+    setSelection(selection?: import("./types.ts").MsaSelection): void;
+    clearSelection(): void;
     setClades(clades: import("./types.ts").Clade[]): void;
     applyHighlight(owner: string, highlights: import("./types.ts").Highlight[]): void;
     clearHighlight(owner: string): void;
@@ -1371,16 +1293,18 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     setMSA(result: string): void;
     setTree(result: string): void;
     setTreeMetadata(result: string): void;
-    setGFF(result: string): void;
+    setGFF(result?: string): void;
 } & {
     readonly hideGapsEffective: boolean;
     readonly realAllowedGappyness: number;
+    readonly allAnnotations: import("msa-parsers").Annotation[];
     readonly actuallyShowDomains: boolean;
     readonly hostRestoresData: boolean;
     readonly viewInitialized: boolean;
     readonly width: number;
 } & {
     readonly colorScheme: Record<string, string>;
+    readonly dynamicColorSchemeName: string | undefined;
     readonly header: Record<string, unknown> | {
         info: string;
         version: string | undefined;
@@ -1570,7 +1494,7 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     doScrollX(deltaX: number): void;
     setScrollX(n: number): void;
     setColumnTracks(tracks: import("./types.ts").ColumnTrackSpec[]): void;
-    setRowData(rowData: Record<string, Record<string, string>>): void;
+    setRowData(rowData: import("./types.ts").RowDataInput): void;
     setEncodings(encodings: import("./types.ts").Encoding[]): void;
     setRowPanels(panels: import("./types.ts").RowPanelSpec[]): void;
     setResidueMappings(mappings: import("./types.ts").ResidueMapping[]): void;
@@ -1610,6 +1534,16 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     }[];
     fillHighlightLabel(label: string, row?: string, start?: number): string;
     readonly resolvedHighlights: import("./types.ts").ResolvedHighlight[];
+    readonly resolvedSelection: import("./types.ts").ResolvedSelection | undefined;
+    readonly selectionSize: {
+        columns: number;
+        rows: number;
+    } | undefined;
+    readonly selectionFileSpan: {
+        start: number;
+        end: number;
+    } | undefined;
+    readonly selectionFasta: string;
     columnStatsAt(col: number): import("./columnStats.ts").ColumnStats | undefined;
     getRowData(name: string): {
         data: {
@@ -1657,11 +1591,20 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     fit(): void;
     fitVertically(): void;
     zoomToRegion(region: import("./types.ts").Region): void;
+    zoomToSelection(): void;
+    selectBlock(anchor: {
+        col: number;
+        row?: number;
+    }, head: {
+        col: number;
+        row?: number;
+    }): void;
     fitHorizontally(): void;
     afterCreate(): void;
 }, import("@jbrowse/mobx-state-tree")._NotCustomized, {
     bgColor: boolean;
     colorSchemeName: string;
+    customColorScheme: Record<string, string> | undefined;
     showColumnStats: boolean;
     msaFormat: import("msa-parsers").MSAFormat | undefined;
     drawLabels: boolean;
@@ -1693,14 +1636,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     scrollX: number;
     colWidth: number;
     treeFilehandle: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1713,14 +1656,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
         }> | undefined;
     } | undefined;
     msaFilehandle: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1733,14 +1676,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
         }> | undefined;
     } | undefined;
     treeMetadataFilehandle: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1753,14 +1696,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
         }> | undefined;
     } | undefined;
     gffFilehandle: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1784,6 +1727,8 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     relativeTo: string | undefined;
     highlightColumns: number[] | undefined;
     highlights: import("./types.ts").Highlight[];
+    features: import("./types.ts").Feature[];
+    selection: import("./types.ts").MsaSelection | undefined;
     region: import("./types.ts").Region | undefined;
     clades: import("./types.ts").Clade[];
     encodings: import("./types.ts").Encoding[];
@@ -1797,6 +1742,7 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
 } | {
     bgColor: boolean;
     colorSchemeName: string;
+    customColorScheme: Record<string, string> | undefined;
     showColumnStats: boolean;
     msaFormat: import("msa-parsers").MSAFormat | undefined;
     drawLabels: boolean;
@@ -1828,14 +1774,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     scrollX: number;
     colWidth: number;
     treeFilehandle: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1848,14 +1794,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
         }> | undefined;
     } | undefined;
     msaFilehandle: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1868,14 +1814,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
         }> | undefined;
     } | undefined;
     treeMetadataFilehandle: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1888,14 +1834,14 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
         }> | undefined;
     } | undefined;
     gffFilehandle: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"LocalPathLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"LocalPathLocation">;
         localPath: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"BlobLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"BlobLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         blobId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
-        locationType: import("@jbrowse/mobx-state-tree").ISimpleType<"FileHandleLocation">;
+        locationType: import("@jbrowse/mobx-state-tree").ILiteralType<"FileHandleLocation">;
         name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
         handleId: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
     }> | {
@@ -1919,6 +1865,8 @@ export declare function createTestModel(snapshot: Omit<Snapshot, 'type'>, width?
     relativeTo: string | undefined;
     highlightColumns: number[] | undefined;
     highlights: import("./types.ts").Highlight[];
+    features: import("./types.ts").Feature[];
+    selection: import("./types.ts").MsaSelection | undefined;
     region: import("./types.ts").Region | undefined;
     clades: import("./types.ts").Clade[];
     encodings: import("./types.ts").Encoding[];