react-msaview 6.5.0 → 7.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +6 -5
- package/bundle/index.js +100 -101
- package/bundle/index.js.map +4 -4
- package/dist/components/Loading.js +2 -2
- package/dist/components/Loading.js.map +1 -1
- package/dist/components/MSAViewer.d.ts +10 -2
- package/dist/components/MSAViewer.js +90 -2
- package/dist/components/MSAViewer.js.map +1 -1
- package/dist/components/ResizeHandles.d.ts +3 -3
- package/dist/components/ResizeHandles.js +28 -21
- package/dist/components/ResizeHandles.js.map +1 -1
- package/dist/components/dialogs/{InterProScanDialog.d.ts → AnnotationFileDialog.d.ts} +2 -2
- package/dist/components/dialogs/AnnotationFileDialog.js +92 -0
- package/dist/components/dialogs/AnnotationFileDialog.js.map +1 -0
- package/dist/components/dialogs/FeatureDialog.js +13 -9
- package/dist/components/dialogs/FeatureDialog.js.map +1 -1
- package/dist/components/header/Header.js +4 -0
- package/dist/components/header/Header.js.map +1 -1
- package/dist/components/header/HeaderStatusArea.js +0 -2
- package/dist/components/header/HeaderStatusArea.js.map +1 -1
- package/dist/components/header/LoadWarnings.d.ts +6 -0
- package/dist/components/header/LoadWarnings.js +36 -0
- package/dist/components/header/LoadWarnings.js.map +1 -0
- package/dist/components/header/MultiAlignmentSelector.js +0 -0
- package/dist/components/header/MultiAlignmentSelector.js.map +1 -1
- package/dist/components/header/TreeSettingsMenu.js +9 -1
- package/dist/components/header/TreeSettingsMenu.js.map +1 -1
- package/dist/components/header/UnshareableDataWarning.d.ts +6 -0
- package/dist/components/header/UnshareableDataWarning.js +42 -0
- package/dist/components/header/UnshareableDataWarning.js.map +1 -0
- package/dist/components/header/getAnnotationsMenu.js +14 -14
- package/dist/components/header/getAnnotationsMenu.js.map +1 -1
- package/dist/components/import/ImportForm.js +1 -1
- package/dist/components/import/ImportForm.js.map +1 -1
- package/dist/components/import/ImportFormExamples.js +2 -6
- package/dist/components/import/ImportFormExamples.js.map +1 -1
- package/dist/components/import/util.js +3 -0
- package/dist/components/import/util.js.map +1 -1
- package/dist/components/msa/MSACanvasBlock.js +4 -5
- package/dist/components/msa/MSACanvasBlock.js.map +1 -1
- package/dist/components/msa/msaRaster.d.ts +13 -3
- package/dist/components/msa/msaRaster.js +173 -61
- package/dist/components/msa/msaRaster.js.map +1 -1
- package/dist/components/msa/renderHighlights.d.ts +39 -1
- package/dist/components/msa/renderHighlights.js +71 -6
- package/dist/components/msa/renderHighlights.js.map +1 -1
- package/dist/components/msa/renderMSABlock.d.ts +1 -2
- package/dist/components/msa/renderMSABlock.js +24 -28
- package/dist/components/msa/renderMSABlock.js.map +1 -1
- package/dist/components/msa/renderMSAMouseover.js +9 -30
- package/dist/components/msa/renderMSAMouseover.js.map +1 -1
- package/dist/components/renderCtx.d.ts +1 -1
- package/dist/components/tracks/TrackBlocks.js +10 -11
- package/dist/components/tracks/TrackBlocks.js.map +1 -1
- package/dist/components/tracks/drawTracks.d.ts +26 -8
- package/dist/components/tracks/drawTracks.js +123 -13
- package/dist/components/tracks/drawTracks.js.map +1 -1
- package/dist/components/tree/TreeCanvas.js +2 -3
- package/dist/components/tree/TreeCanvas.js.map +1 -1
- package/dist/components/tree/TreeCanvasBlock.js +4 -2
- package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
- package/dist/components/tree/TreeRuler.js +13 -3
- package/dist/components/tree/TreeRuler.js.map +1 -1
- package/dist/components/tree/renderTreeCanvas.d.ts +0 -1
- package/dist/components/tree/renderTreeCanvas.js +70 -30
- package/dist/components/tree/renderTreeCanvas.js.map +1 -1
- package/dist/components/tree/scaleBar.d.ts +10 -0
- package/dist/components/tree/scaleBar.js +24 -0
- package/dist/components/tree/scaleBar.js.map +1 -0
- package/dist/constants.d.ts +3 -1
- package/dist/constants.js +18 -1
- package/dist/constants.js.map +1 -1
- package/dist/fetchUtils.d.ts +7 -7
- package/dist/fetchUtils.js +4 -32
- package/dist/fetchUtils.js.map +1 -1
- package/dist/hierarchy.d.ts +2 -1
- package/dist/hierarchy.js +16 -10
- package/dist/hierarchy.js.map +1 -1
- package/dist/index.d.ts +2 -1
- package/dist/index.js +8 -2
- package/dist/index.js.map +1 -1
- package/dist/model/DataModel.js +5 -2
- package/dist/model/DataModel.js.map +1 -1
- package/dist/model.d.ts +454 -177
- package/dist/model.js +1180 -511
- package/dist/model.js.map +1 -1
- package/dist/renderToStaticMarkup.d.ts +11 -0
- package/dist/renderToStaticMarkup.js +30 -7
- package/dist/renderToStaticMarkup.js.map +1 -1
- package/dist/renderToSvg.js +25 -19
- package/dist/renderToSvg.js.map +1 -1
- package/dist/rowCoordinateCalculations.d.ts +25 -25
- package/dist/rowCoordinateCalculations.js +12 -36
- package/dist/rowCoordinateCalculations.js.map +1 -1
- package/dist/seqPosToGlobalCol.js +3 -1
- package/dist/seqPosToGlobalCol.js.map +1 -1
- package/dist/svgTestUtil.d.ts +144 -82
- package/dist/types.d.ts +97 -3
- package/dist/util.d.ts +11 -4
- package/dist/util.js +30 -10
- package/dist/util.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/wuss.d.ts +14 -0
- package/dist/wuss.js +55 -0
- package/dist/wuss.js.map +1 -0
- package/package.json +10 -8
- package/src/components/Loading.tsx +12 -2
- package/src/components/MSAViewer.tsx +106 -2
- package/src/components/ResizeHandles.tsx +31 -31
- package/src/components/dialogs/AnnotationFileDialog.tsx +162 -0
- package/src/components/dialogs/FeatureDialog.tsx +13 -9
- package/src/components/header/Header.tsx +4 -0
- package/src/components/header/HeaderStatusArea.tsx +0 -5
- package/src/components/header/LoadWarnings.tsx +49 -0
- package/src/components/header/MultiAlignmentSelector.tsx +0 -0
- package/src/components/header/TreeSettingsMenu.tsx +9 -1
- package/src/components/header/UnshareableDataWarning.tsx +58 -0
- package/src/components/header/getAnnotationsMenu.ts +16 -17
- package/src/components/import/ImportForm.tsx +2 -2
- package/src/components/import/ImportFormExamples.tsx +2 -6
- package/src/components/import/util.ts +3 -0
- package/src/components/msa/MSACanvasBlock.tsx +4 -5
- package/src/components/msa/msaRaster.ts +216 -59
- package/src/components/msa/renderHighlights.ts +103 -5
- package/src/components/msa/renderMSABlock.ts +25 -36
- package/src/components/msa/renderMSAMouseover.ts +9 -39
- package/src/components/renderCtx.ts +1 -0
- package/src/components/tracks/TrackBlocks.tsx +10 -13
- package/src/components/tracks/drawTracks.ts +165 -17
- package/src/components/tree/TreeCanvas.tsx +2 -3
- package/src/components/tree/TreeCanvasBlock.tsx +4 -2
- package/src/components/tree/TreeRuler.tsx +38 -3
- package/src/components/tree/renderTreeCanvas.ts +79 -35
- package/src/components/tree/scaleBar.ts +23 -0
- package/src/constants.ts +20 -1
- package/src/fetchUtils.ts +7 -40
- package/src/hierarchy.ts +20 -11
- package/src/index.ts +18 -2
- package/src/model/DataModel.ts +6 -2
- package/src/model.ts +1352 -616
- package/src/rawImports.d.ts +9 -0
- package/src/renderToStaticMarkup.ts +34 -7
- package/src/renderToSvg.tsx +33 -27
- package/src/rowCoordinateCalculations.ts +15 -59
- package/src/seqPosToGlobalCol.ts +3 -1
- package/src/types.ts +131 -4
- package/src/util.ts +31 -14
- package/src/version.ts +1 -1
- package/src/wuss.ts +62 -0
- package/dist/components/dialogs/InterProScanDialog.js +0 -137
- package/dist/components/dialogs/InterProScanDialog.js.map +0 -1
- package/dist/components/dialogs/InterProScanFileDialog.d.ts +0 -7
- package/dist/components/dialogs/InterProScanFileDialog.js +0 -64
- package/dist/components/dialogs/InterProScanFileDialog.js.map +0 -1
- package/dist/launchInterProScan.d.ts +0 -13
- package/dist/launchInterProScan.js +0 -110
- package/dist/launchInterProScan.js.map +0 -1
- package/dist/useColorContrast.d.ts +0 -10
- package/dist/useColorContrast.js +0 -13
- package/dist/useColorContrast.js.map +0 -1
- package/src/clustalX.test.ts +0 -74
- package/src/colSpace.test.ts +0 -67
- package/src/collapseLogic.test.ts +0 -115
- package/src/colorSchemes.docs.test.ts +0 -57
- package/src/columnCounts.test.ts +0 -73
- package/src/columnStats.test.ts +0 -94
- package/src/columnTracks.test.ts +0 -97
- package/src/components/dialogs/InterProScanDialog.tsx +0 -214
- package/src/components/dialogs/InterProScanFileDialog.tsx +0 -138
- package/src/components/minimap/minimapLayout.test.ts +0 -71
- package/src/components/msa/msaRaster.test.ts +0 -145
- package/src/components/msa/renderBoxFeatureCanvasBlock.test.ts +0 -51
- package/src/components/tree/renderTreeCanvas.test.ts +0 -296
- package/src/dataInitialized.test.ts +0 -42
- package/src/domainBands.test.ts +0 -122
- package/src/domainLetterColor.test.ts +0 -80
- package/src/exportFileName.test.ts +0 -40
- package/src/fetchUtils.test.ts +0 -83
- package/src/flatToTree.test.ts +0 -51
- package/src/hierarchy.test.ts +0 -228
- package/src/highlights.test.ts +0 -70
- package/src/impgRender.test.tsx +0 -68
- package/src/largeTree.test.ts +0 -67
- package/src/launchInterProScan.ts +0 -167
- package/src/loadErrorDisplay.test.tsx +0 -102
- package/src/modelFilehandleLoaders.test.ts +0 -137
- package/src/modelReset.test.ts +0 -120
- package/src/neighborJoining.test.ts +0 -164
- package/src/parseAsn1.test.ts +0 -36
- package/src/propertyConservation.test.ts +0 -36
- package/src/renderColumnTracksSvg.test.tsx +0 -108
- package/src/renderDomainsSvg.test.tsx +0 -118
- package/src/renderHighlightsSvg.test.tsx +0 -85
- package/src/renderMinimapSvg.test.tsx +0 -62
- package/src/renderRasterSvg.test.tsx +0 -144
- package/src/renderSequenceLogoSvg.test.tsx +0 -165
- package/src/renderToSvg.test.tsx +0 -65
- package/src/reset.test.ts +0 -61
- package/src/rowCoordinateCalculations.test.ts +0 -211
- package/src/rowSpace.test.ts +0 -46
- package/src/segmentOverlay.test.ts +0 -70
- package/src/seqPosToGlobalCol.test.ts +0 -59
- package/src/sequenceLogo.test.ts +0 -88
- package/src/setFontSize.test.ts +0 -33
- package/src/stripDefault.test.ts +0 -48
- package/src/stripDefaultSnapshot.test.ts +0 -87
- package/src/treeMetadata.test.ts +0 -39
- package/src/useCanvasAutorun.test.tsx +0 -98
- package/src/useColorContrast.ts +0 -18
- package/src/viewChrome.test.tsx +0 -134
- package/src/wheelZoom.test.ts +0 -46
package/src/wheelZoom.test.ts
DELETED
|
@@ -1,46 +0,0 @@
|
|
|
1
|
-
import { describe, expect, test } from 'vitest'
|
|
2
|
-
|
|
3
|
-
import {
|
|
4
|
-
getZoomNormalizer,
|
|
5
|
-
normalizeWheelDelta,
|
|
6
|
-
zoomFactorFromAccum,
|
|
7
|
-
} from './wheelZoom.ts'
|
|
8
|
-
|
|
9
|
-
describe('normalizeWheelDelta', () => {
|
|
10
|
-
test('pixel mode passes through', () => {
|
|
11
|
-
expect(normalizeWheelDelta(120, 0)).toBe(120)
|
|
12
|
-
})
|
|
13
|
-
test('line mode scales to pixels', () => {
|
|
14
|
-
expect(normalizeWheelDelta(3, 1)).toBe(48)
|
|
15
|
-
})
|
|
16
|
-
test('page mode scales to pixels', () => {
|
|
17
|
-
expect(normalizeWheelDelta(2, 2)).toBe(200)
|
|
18
|
-
})
|
|
19
|
-
})
|
|
20
|
-
|
|
21
|
-
describe('getZoomNormalizer', () => {
|
|
22
|
-
test('tiny pinch deltas get the smallest divisor (largest step)', () => {
|
|
23
|
-
expect(getZoomNormalizer(3)).toBe(25)
|
|
24
|
-
})
|
|
25
|
-
test('large mouse notches get the largest divisor (finest step)', () => {
|
|
26
|
-
expect(getZoomNormalizer(200)).toBe(500)
|
|
27
|
-
})
|
|
28
|
-
test('medium deltas land in between', () => {
|
|
29
|
-
expect(getZoomNormalizer(50)).toBe(150)
|
|
30
|
-
expect(getZoomNormalizer(20)).toBe(75)
|
|
31
|
-
})
|
|
32
|
-
})
|
|
33
|
-
|
|
34
|
-
describe('zoomFactorFromAccum', () => {
|
|
35
|
-
test('negative accum zooms in (factor > 1)', () => {
|
|
36
|
-
expect(zoomFactorFromAccum(-0.1, 16.67)).toBeCloseTo(1.1)
|
|
37
|
-
})
|
|
38
|
-
test('positive accum zooms out (factor < 1)', () => {
|
|
39
|
-
expect(zoomFactorFromAccum(0.1, 16.67)).toBeCloseTo(1 / 1.1)
|
|
40
|
-
})
|
|
41
|
-
test('rate-limits a big burst to ~0.2 per frame', () => {
|
|
42
|
-
// a huge accumulated delta cannot zoom more than the per-frame cap
|
|
43
|
-
expect(zoomFactorFromAccum(99, 16.67)).toBeCloseTo(1 / 1.2, 2)
|
|
44
|
-
expect(zoomFactorFromAccum(-99, 16.67)).toBeCloseTo(1.2, 2)
|
|
45
|
-
})
|
|
46
|
-
})
|