react-msaview 6.5.0 → 7.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (212) hide show
  1. package/README.md +6 -5
  2. package/bundle/index.js +100 -101
  3. package/bundle/index.js.map +4 -4
  4. package/dist/components/Loading.js +2 -2
  5. package/dist/components/Loading.js.map +1 -1
  6. package/dist/components/MSAViewer.d.ts +10 -2
  7. package/dist/components/MSAViewer.js +90 -2
  8. package/dist/components/MSAViewer.js.map +1 -1
  9. package/dist/components/ResizeHandles.d.ts +3 -3
  10. package/dist/components/ResizeHandles.js +28 -21
  11. package/dist/components/ResizeHandles.js.map +1 -1
  12. package/dist/components/dialogs/{InterProScanDialog.d.ts → AnnotationFileDialog.d.ts} +2 -2
  13. package/dist/components/dialogs/AnnotationFileDialog.js +92 -0
  14. package/dist/components/dialogs/AnnotationFileDialog.js.map +1 -0
  15. package/dist/components/dialogs/FeatureDialog.js +13 -9
  16. package/dist/components/dialogs/FeatureDialog.js.map +1 -1
  17. package/dist/components/header/Header.js +4 -0
  18. package/dist/components/header/Header.js.map +1 -1
  19. package/dist/components/header/HeaderStatusArea.js +0 -2
  20. package/dist/components/header/HeaderStatusArea.js.map +1 -1
  21. package/dist/components/header/LoadWarnings.d.ts +6 -0
  22. package/dist/components/header/LoadWarnings.js +36 -0
  23. package/dist/components/header/LoadWarnings.js.map +1 -0
  24. package/dist/components/header/MultiAlignmentSelector.js +0 -0
  25. package/dist/components/header/MultiAlignmentSelector.js.map +1 -1
  26. package/dist/components/header/TreeSettingsMenu.js +9 -1
  27. package/dist/components/header/TreeSettingsMenu.js.map +1 -1
  28. package/dist/components/header/UnshareableDataWarning.d.ts +6 -0
  29. package/dist/components/header/UnshareableDataWarning.js +42 -0
  30. package/dist/components/header/UnshareableDataWarning.js.map +1 -0
  31. package/dist/components/header/getAnnotationsMenu.js +14 -14
  32. package/dist/components/header/getAnnotationsMenu.js.map +1 -1
  33. package/dist/components/import/ImportForm.js +1 -1
  34. package/dist/components/import/ImportForm.js.map +1 -1
  35. package/dist/components/import/ImportFormExamples.js +2 -6
  36. package/dist/components/import/ImportFormExamples.js.map +1 -1
  37. package/dist/components/import/util.js +3 -0
  38. package/dist/components/import/util.js.map +1 -1
  39. package/dist/components/msa/MSACanvasBlock.js +4 -5
  40. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  41. package/dist/components/msa/msaRaster.d.ts +13 -3
  42. package/dist/components/msa/msaRaster.js +173 -61
  43. package/dist/components/msa/msaRaster.js.map +1 -1
  44. package/dist/components/msa/renderHighlights.d.ts +39 -1
  45. package/dist/components/msa/renderHighlights.js +71 -6
  46. package/dist/components/msa/renderHighlights.js.map +1 -1
  47. package/dist/components/msa/renderMSABlock.d.ts +1 -2
  48. package/dist/components/msa/renderMSABlock.js +24 -28
  49. package/dist/components/msa/renderMSABlock.js.map +1 -1
  50. package/dist/components/msa/renderMSAMouseover.js +9 -30
  51. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  52. package/dist/components/renderCtx.d.ts +1 -1
  53. package/dist/components/tracks/TrackBlocks.js +10 -11
  54. package/dist/components/tracks/TrackBlocks.js.map +1 -1
  55. package/dist/components/tracks/drawTracks.d.ts +26 -8
  56. package/dist/components/tracks/drawTracks.js +123 -13
  57. package/dist/components/tracks/drawTracks.js.map +1 -1
  58. package/dist/components/tree/TreeCanvas.js +2 -3
  59. package/dist/components/tree/TreeCanvas.js.map +1 -1
  60. package/dist/components/tree/TreeCanvasBlock.js +4 -2
  61. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  62. package/dist/components/tree/TreeRuler.js +13 -3
  63. package/dist/components/tree/TreeRuler.js.map +1 -1
  64. package/dist/components/tree/renderTreeCanvas.d.ts +0 -1
  65. package/dist/components/tree/renderTreeCanvas.js +70 -30
  66. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  67. package/dist/components/tree/scaleBar.d.ts +10 -0
  68. package/dist/components/tree/scaleBar.js +24 -0
  69. package/dist/components/tree/scaleBar.js.map +1 -0
  70. package/dist/constants.d.ts +3 -1
  71. package/dist/constants.js +18 -1
  72. package/dist/constants.js.map +1 -1
  73. package/dist/fetchUtils.d.ts +7 -7
  74. package/dist/fetchUtils.js +4 -32
  75. package/dist/fetchUtils.js.map +1 -1
  76. package/dist/hierarchy.d.ts +2 -1
  77. package/dist/hierarchy.js +16 -10
  78. package/dist/hierarchy.js.map +1 -1
  79. package/dist/index.d.ts +2 -1
  80. package/dist/index.js +8 -2
  81. package/dist/index.js.map +1 -1
  82. package/dist/model/DataModel.js +5 -2
  83. package/dist/model/DataModel.js.map +1 -1
  84. package/dist/model.d.ts +454 -177
  85. package/dist/model.js +1180 -511
  86. package/dist/model.js.map +1 -1
  87. package/dist/renderToStaticMarkup.d.ts +11 -0
  88. package/dist/renderToStaticMarkup.js +30 -7
  89. package/dist/renderToStaticMarkup.js.map +1 -1
  90. package/dist/renderToSvg.js +25 -19
  91. package/dist/renderToSvg.js.map +1 -1
  92. package/dist/rowCoordinateCalculations.d.ts +25 -25
  93. package/dist/rowCoordinateCalculations.js +12 -36
  94. package/dist/rowCoordinateCalculations.js.map +1 -1
  95. package/dist/seqPosToGlobalCol.js +3 -1
  96. package/dist/seqPosToGlobalCol.js.map +1 -1
  97. package/dist/svgTestUtil.d.ts +144 -82
  98. package/dist/types.d.ts +97 -3
  99. package/dist/util.d.ts +11 -4
  100. package/dist/util.js +30 -10
  101. package/dist/util.js.map +1 -1
  102. package/dist/version.d.ts +1 -1
  103. package/dist/version.js +1 -1
  104. package/dist/wuss.d.ts +14 -0
  105. package/dist/wuss.js +55 -0
  106. package/dist/wuss.js.map +1 -0
  107. package/package.json +10 -8
  108. package/src/components/Loading.tsx +12 -2
  109. package/src/components/MSAViewer.tsx +106 -2
  110. package/src/components/ResizeHandles.tsx +31 -31
  111. package/src/components/dialogs/AnnotationFileDialog.tsx +162 -0
  112. package/src/components/dialogs/FeatureDialog.tsx +13 -9
  113. package/src/components/header/Header.tsx +4 -0
  114. package/src/components/header/HeaderStatusArea.tsx +0 -5
  115. package/src/components/header/LoadWarnings.tsx +49 -0
  116. package/src/components/header/MultiAlignmentSelector.tsx +0 -0
  117. package/src/components/header/TreeSettingsMenu.tsx +9 -1
  118. package/src/components/header/UnshareableDataWarning.tsx +58 -0
  119. package/src/components/header/getAnnotationsMenu.ts +16 -17
  120. package/src/components/import/ImportForm.tsx +2 -2
  121. package/src/components/import/ImportFormExamples.tsx +2 -6
  122. package/src/components/import/util.ts +3 -0
  123. package/src/components/msa/MSACanvasBlock.tsx +4 -5
  124. package/src/components/msa/msaRaster.ts +216 -59
  125. package/src/components/msa/renderHighlights.ts +103 -5
  126. package/src/components/msa/renderMSABlock.ts +25 -36
  127. package/src/components/msa/renderMSAMouseover.ts +9 -39
  128. package/src/components/renderCtx.ts +1 -0
  129. package/src/components/tracks/TrackBlocks.tsx +10 -13
  130. package/src/components/tracks/drawTracks.ts +165 -17
  131. package/src/components/tree/TreeCanvas.tsx +2 -3
  132. package/src/components/tree/TreeCanvasBlock.tsx +4 -2
  133. package/src/components/tree/TreeRuler.tsx +38 -3
  134. package/src/components/tree/renderTreeCanvas.ts +79 -35
  135. package/src/components/tree/scaleBar.ts +23 -0
  136. package/src/constants.ts +20 -1
  137. package/src/fetchUtils.ts +7 -40
  138. package/src/hierarchy.ts +20 -11
  139. package/src/index.ts +18 -2
  140. package/src/model/DataModel.ts +6 -2
  141. package/src/model.ts +1352 -616
  142. package/src/rawImports.d.ts +9 -0
  143. package/src/renderToStaticMarkup.ts +34 -7
  144. package/src/renderToSvg.tsx +33 -27
  145. package/src/rowCoordinateCalculations.ts +15 -59
  146. package/src/seqPosToGlobalCol.ts +3 -1
  147. package/src/types.ts +131 -4
  148. package/src/util.ts +31 -14
  149. package/src/version.ts +1 -1
  150. package/src/wuss.ts +62 -0
  151. package/dist/components/dialogs/InterProScanDialog.js +0 -137
  152. package/dist/components/dialogs/InterProScanDialog.js.map +0 -1
  153. package/dist/components/dialogs/InterProScanFileDialog.d.ts +0 -7
  154. package/dist/components/dialogs/InterProScanFileDialog.js +0 -64
  155. package/dist/components/dialogs/InterProScanFileDialog.js.map +0 -1
  156. package/dist/launchInterProScan.d.ts +0 -13
  157. package/dist/launchInterProScan.js +0 -110
  158. package/dist/launchInterProScan.js.map +0 -1
  159. package/dist/useColorContrast.d.ts +0 -10
  160. package/dist/useColorContrast.js +0 -13
  161. package/dist/useColorContrast.js.map +0 -1
  162. package/src/clustalX.test.ts +0 -74
  163. package/src/colSpace.test.ts +0 -67
  164. package/src/collapseLogic.test.ts +0 -115
  165. package/src/colorSchemes.docs.test.ts +0 -57
  166. package/src/columnCounts.test.ts +0 -73
  167. package/src/columnStats.test.ts +0 -94
  168. package/src/columnTracks.test.ts +0 -97
  169. package/src/components/dialogs/InterProScanDialog.tsx +0 -214
  170. package/src/components/dialogs/InterProScanFileDialog.tsx +0 -138
  171. package/src/components/minimap/minimapLayout.test.ts +0 -71
  172. package/src/components/msa/msaRaster.test.ts +0 -145
  173. package/src/components/msa/renderBoxFeatureCanvasBlock.test.ts +0 -51
  174. package/src/components/tree/renderTreeCanvas.test.ts +0 -296
  175. package/src/dataInitialized.test.ts +0 -42
  176. package/src/domainBands.test.ts +0 -122
  177. package/src/domainLetterColor.test.ts +0 -80
  178. package/src/exportFileName.test.ts +0 -40
  179. package/src/fetchUtils.test.ts +0 -83
  180. package/src/flatToTree.test.ts +0 -51
  181. package/src/hierarchy.test.ts +0 -228
  182. package/src/highlights.test.ts +0 -70
  183. package/src/impgRender.test.tsx +0 -68
  184. package/src/largeTree.test.ts +0 -67
  185. package/src/launchInterProScan.ts +0 -167
  186. package/src/loadErrorDisplay.test.tsx +0 -102
  187. package/src/modelFilehandleLoaders.test.ts +0 -137
  188. package/src/modelReset.test.ts +0 -120
  189. package/src/neighborJoining.test.ts +0 -164
  190. package/src/parseAsn1.test.ts +0 -36
  191. package/src/propertyConservation.test.ts +0 -36
  192. package/src/renderColumnTracksSvg.test.tsx +0 -108
  193. package/src/renderDomainsSvg.test.tsx +0 -118
  194. package/src/renderHighlightsSvg.test.tsx +0 -85
  195. package/src/renderMinimapSvg.test.tsx +0 -62
  196. package/src/renderRasterSvg.test.tsx +0 -144
  197. package/src/renderSequenceLogoSvg.test.tsx +0 -165
  198. package/src/renderToSvg.test.tsx +0 -65
  199. package/src/reset.test.ts +0 -61
  200. package/src/rowCoordinateCalculations.test.ts +0 -211
  201. package/src/rowSpace.test.ts +0 -46
  202. package/src/segmentOverlay.test.ts +0 -70
  203. package/src/seqPosToGlobalCol.test.ts +0 -59
  204. package/src/sequenceLogo.test.ts +0 -88
  205. package/src/setFontSize.test.ts +0 -33
  206. package/src/stripDefault.test.ts +0 -48
  207. package/src/stripDefaultSnapshot.test.ts +0 -87
  208. package/src/treeMetadata.test.ts +0 -39
  209. package/src/useCanvasAutorun.test.tsx +0 -98
  210. package/src/useColorContrast.ts +0 -18
  211. package/src/viewChrome.test.tsx +0 -134
  212. package/src/wheelZoom.test.ts +0 -46

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