react-msaview 5.9.0 → 6.0.0

package/dist/components/VerticalScrollbar.js

@@ -1,43 +1,29 @@
-import React, { useCallback, useState } from 'react';
-import { clamp } from '@jbrowse/core/util';
+import React, { useCallback } from 'react';
 import { observer } from 'mobx-react';
-import { useDragScroll } from '../useDragScroll.js';
+import ScrollbarThumb from './ScrollbarThumb.js';
+const width = 20;
 const VerticalScrollbar = observer(({ model }) => {
     const { msaAreaHeight, scrollY, totalHeight } = model;
-    const [hovered, setHovered] = useState(false);
-    const fill = 'rgba(66, 119, 127, 0.3)';
     const unit = msaAreaHeight / totalHeight;
-    const top = -scrollY;
-    const bottom = top + msaAreaHeight;
-    const t = top * unit;
-    const b = bottom * unit;
-    const { startDrag } = useDragScroll('y', useCallback((delta, startScroll) => {
-        model.setScrollY(clamp(startScroll - delta / unit, model.maxScrollY, 0));
-    }, [model, unit]));
+    const t = -scrollY * unit;
+    const b = (-scrollY + msaAreaHeight) * unit;
+    const onDrag = useCallback((delta, startScroll) => {
+        model.setScrollY(startScroll - delta / unit);
+    }, [model, unit]);
     return (React.createElement("div", { style: {
             position: 'relative',
-            width: 20,
+            width,
             height: msaAreaHeight,
             borderLeft: '1px solid #555',
             borderTop: '1px solid #555',
             boxSizing: 'border-box',
         } },
-        React.createElement("div", { style: {
-                position: 'absolute',
+        React.createElement(ScrollbarThumb, { axis: "y", getStart: () => model.scrollY, onDrag: onDrag, style: {
                 top: Math.max(0, t),
                 left: 0,
-                background: hovered ? 'rgba(66,119,127,0.6)' : fill,
-                cursor: 'pointer',
                 boxSizing: 'border-box',
-                width: 20,
+                width,
                 height: Math.max(b - t, 20),
-                zIndex: 100,
-            }, onMouseOver: () => {
-                setHovered(true);
-            }, onMouseOut: () => {
-                setHovered(false);
-            }, onMouseDown: event => {
-                startDrag(event, model.scrollY);
             } })));
 });
 export default VerticalScrollbar;

package/dist/components/VerticalScrollbar.js.map

@@ -1 +1 @@
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+{"version":3,"file":"VerticalScrollbar.js","sourceRoot":"","sources":["../../src/components/VerticalScrollbar.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,OAAO,CAAA;AAE1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,qBAAsB,CAAA;AAIjD,MAAM,KAAK,GAAG,EAAE,CAAA;AAEhB,MAAM,iBAAiB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IACxE,MAAM,EAAE,aAAa,EAAE,OAAO,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrD,MAAM,IAAI,GAAG,aAAa,GAAG,WAAW,CAAA;IACxC,MAAM,CAAC,GAAG,CAAC,OAAO,GAAG,IAAI,CAAA;IACzB,MAAM,CAAC,GAAG,CAAC,CAAC,OAAO,GAAG,aAAa,CAAC,GAAG,IAAI,CAAA;IAE3C,MAAM,MAAM,GAAG,WAAW,CACxB,CAAC,KAAa,EAAE,WAAmB,EAAE,EAAE;QACrC,KAAK,CAAC,UAAU,CAAC,WAAW,GAAG,KAAK,GAAG,IAAI,CAAC,CAAA;IAC9C,CAAC,EACD,CAAC,KAAK,EAAE,IAAI,CAAC,CACd,CAAA;IAED,OAAO,CACL,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,KAAK;YACL,MAAM,EAAE,aAAa;YACrB,UAAU,EAAE,gBAAgB;YAC5B,SAAS,EAAE,gBAAgB;YAC3B,SAAS,EAAE,YAAY;SACxB;QAED,oBAAC,cAAc,IACb,IAAI,EAAC,GAAG,EACR,QAAQ,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,OAAO,EAC7B,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;gBACL,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC;gBACnB,IAAI,EAAE,CAAC;gBACP,SAAS,EAAE,YAAY;gBACvB,KAAK;gBACL,MAAM,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC;aAC5B,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,iBAAiB,CAAA"}

package/dist/components/dialogs/FeatureDialog.js

@@ -17,9 +17,9 @@ const Toggles = observer(function ({ model }) {
             } }, "Toggle all off")));
 });
 const FeatureTable = observer(function ({ model }) {
-    const { tidyInterProAnnotationTypes, tidyInterProAnnotations, fillPalette } = model;
+    const { annotationTypes, annotations, fillPalette } = model;
     const counts = new Map();
-    for (const annot of tidyInterProAnnotations) {
+    for (const annot of annotations) {
         counts.set(annot.accession, (counts.get(annot.accession) ?? 0) + 1);
     }
     return (React.createElement(React.Fragment, null,
@@ -33,7 +33,7 @@ const FeatureTable = observer(function ({ model }) {
                     React.createElement(TableCell, null, "name"),
                     React.createElement(TableCell, null, "count"),
                     React.createElement(TableCell, null, "description"))),
-            React.createElement(TableBody, null, [...tidyInterProAnnotationTypes.values()].map(({ accession, name, description }) => (React.createElement(TableRow, { key: accession },
+            React.createElement(TableBody, null, [...annotationTypes.values()].map(({ accession, name, description }) => (React.createElement(TableRow, { key: accession },
                 React.createElement(TableCell, { padding: "checkbox" },
                     React.createElement(Checkbox, { checked: model.featureFilters.get(accession) ?? false, onChange: () => {
                             model.setFilter(accession, !model.featureFilters.get(accession));

package/dist/components/dialogs/FeatureDialog.js.map

@@ -1 +1 @@
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package/dist/components/dialogs/{UserProvidedDomainsDialog.d.ts → InterProScanFileDialog.d.ts}

@@ -1,7 +1,7 @@
 import React from 'react';
 import type { MsaViewModel } from '../../model.ts';
-declare const UserProvidedDomainsDialog: ({ handleClose, model, }: {
+declare const InterProScanFileDialog: ({ handleClose, model, }: {
     handleClose: () => void;
     model: MsaViewModel;
 }) => React.JSX.Element;
-export default UserProvidedDomainsDialog;
+export default InterProScanFileDialog;

package/dist/components/dialogs/{UserProvidedDomainsDialog.js → InterProScanFileDialog.js}

@@ -3,12 +3,13 @@ import { Dialog } from '@jbrowse/core/ui';
 import { getSession } from '@jbrowse/core/util';
 import { Button, DialogActions, DialogContent, FormControl, FormControlLabel, Radio, RadioGroup, TextField, Typography, } from '@mui/material';
 import { observer } from 'mobx-react';
+import { interProScanResponseToAnnotations } from 'msa-parsers';
 import { jsonfetch } from '../../fetchUtils.js';
-const UserProvidedDomainsDialog = observer(function ({ handleClose, model, }) {
+const InterProScanFileDialog = observer(function ({ handleClose, model, }) {
     const [file, setFile] = useState();
     const [choice, setChoice] = useState('file');
     const [interProURL, setInterProURL] = useState('');
-    return (React.createElement(Dialog, { maxWidth: "xl", title: "Open protein domains from file", onClose: () => {
+    return (React.createElement(Dialog, { maxWidth: "xl", title: "Open InterProScan results", onClose: () => {
             handleClose();
         }, open: true },
         React.createElement(DialogContent, null,
@@ -45,12 +46,7 @@ const UserProvidedDomainsDialog = observer(function ({ handleClose, model, }) {
                             const ret = file
                                 ? JSON.parse(await file.text())
                                 : await jsonfetch(interProURL);
-                            // key each result by its xref id; a result without one has no
-                            // row to attach to, and keying it `undefined` would draw a
-                            // phantom row's worth of domains
-                            model.setDomains(Object.fromEntries(ret.results
-                                .map(r => [r.xref[0]?.id, r])
-                                .filter(e => e[0] !== undefined)));
+                            model.setAnnotations(interProScanResponseToAnnotations(ret));
                             getSession(model).notify('Loaded interproscan results', 'success');
                         }
                         catch (e) {
@@ -64,5 +60,5 @@ const UserProvidedDomainsDialog = observer(function ({ handleClose, model, }) {
                     handleClose();
                 } }, "Open results"))));
 });
-export default UserProvidedDomainsDialog;
-//# sourceMappingURL=UserProvidedDomainsDialog.js.map
+export default InterProScanFileDialog;
+//# sourceMappingURL=InterProScanFileDialog.js.map

package/dist/components/dialogs/InterProScanFileDialog.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"InterProScanFileDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/InterProScanFileDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEvC,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,gBAAgB,EAChB,KAAK,EACL,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,iCAAiC,EAAE,MAAM,aAAa,CAAA;AAE/D,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAA;AAK/C,MAAM,sBAAsB,GAAG,QAAQ,CAAC,UAAU,EAChD,WAAW,EACX,KAAK,GAIN;IACC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,EAAQ,CAAA;IACxC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAA;IAC5C,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAElD,OAAO,CACL,oBAAC,MAAM,IACL,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,2BAA2B,EACjC,OAAO,EAAE,GAAG,EAAE;YACZ,WAAW,EAAE,CAAA;QACf,CAAC,EACD,IAAI;QAEJ,oBAAC,aAAa;YACZ;gBACE,oBAAC,UAAU,mGAGE;gBAEb,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE;oBACzC,oBAAC,WAAW,IAAC,SAAS,EAAC,UAAU;wBAC/B,oBAAC,UAAU,IACT,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,KAAK,CAAC,EAAE;gCAChB,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;4BAC/B,CAAC;4BAED,oBAAC,gBAAgB,IAAC,KAAK,EAAC,KAAK,EAAC,OAAO,EAAE,oBAAC,KAAK,OAAG,EAAE,KAAK,EAAC,KAAK,GAAG;4BAChE,oBAAC,gBAAgB,IACf,KAAK,EAAC,MAAM,EACZ,OAAO,EAAE,oBAAC,KAAK,OAAG,EAClB,KAAK,EAAC,MAAM,GACZ,CACS,CACD;oBACb,MAAM,KAAK,KAAK,CAAC,CAAC,CAAC,CAClB;wBACE,oBAAC,UAAU,mDAEE;wBACb,oBAAC,SAAS,IACR,KAAK,EAAC,KAAK,EACX,KAAK,EAAE,WAAW,EAClB,QAAQ,EAAE,KAAK,CAAC,EAAE;gCAChB,cAAc,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;4BACpC,CAAC,GACD,CACE,CACP,CAAC,CAAC,CAAC,IAAI;oBACP,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC,CACnB,6BAAK,KAAK,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE;wBAC5B,oBAAC,UAAU,mEAEE;wBACb,oBAAC,MAAM,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAC,OAAO;;4BAE1C,+BACE,IAAI,EAAC,MAAM,EACX,MAAM,QACN,QAAQ,EAAE,CAAC,EAAE,MAAM,EAAE,EAAE,EAAE;oCACvB,MAAM,IAAI,GAAG,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAA;oCAC9B,IAAI,IAAI,EAAE,CAAC;wCACT,OAAO,CAAC,IAAI,CAAC,CAAA;oCACf,CAAC;gCACH,CAAC,GACD,CACK,CACL,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACF,CACQ;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;oBACZ,mEAAmE;oBACnE,CAAC;oBAAA,CAAC,KAAK,IAAI,EAAE;wBACX,IAAI,CAAC;4BACH,MAAM,GAAG,GAAyB,IAAI;gCACpC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,IAAI,CAAC,IAAI,EAAE,CAAC;gCAC/B,CAAC,CAAC,MAAM,SAAS,CAAC,WAAW,CAAC,CAAA;4BAEhC,KAAK,CAAC,cAAc,CAAC,iCAAiC,CAAC,GAAG,CAAC,CAAC,CAAA;4BAC5D,UAAU,CAAC,KAAK,CAAC,CAAC,MAAM,CACtB,6BAA6B,EAC7B,SAAS,CACV,CAAA;wBACH,CAAC;wBAAC,OAAO,CAAC,EAAE,CAAC;4BACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;4BAChB,UAAU,CAAC,KAAK,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAA;wBAC1C,CAAC;gCAAS,CAAC;4BACT,KAAK,CAAC,SAAS,EAAE,CAAA;wBACnB,CAAC;oBACH,CAAC,CAAC,EAAE,CAAA;oBACJ,WAAW,EAAE,CAAA;gBACf,CAAC,mBAGM,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,sBAAsB,CAAA"}

package/dist/components/dialogs/TrackInfoDialog.d.ts

@@ -1,9 +1,7 @@
 import React from 'react';
+import type { BasicTrack } from '../../types.ts';
 declare const TrackInfoDialog: ({ model, onClose, }: {
-    model: {
-        name: string;
-        data: string;
-    };
+    model: BasicTrack['model'];
     onClose: () => void;
 }) => React.JSX.Element;
 export default TrackInfoDialog;

package/dist/components/dialogs/TrackInfoDialog.js

@@ -1,9 +1,9 @@
-import React, { useState } from 'react';
+import React from 'react';
 import { Dialog } from '@jbrowse/core/ui';
 import { makeStyles } from '@jbrowse/core/util/tss-react';
-import { Button, DialogActions, DialogContent } from '@mui/material';
+import { Button, DialogActions, DialogContent, Typography } from '@mui/material';
 import { observer } from 'mobx-react';
-import copy from '../../vendor/copyToClipboard.js';
+import CopyButton from '../CopyButton.js';
 const useStyles = makeStyles()(theme => ({
     textArea: {
         padding: theme.spacing(2),
@@ -13,18 +13,12 @@ const useStyles = makeStyles()(theme => ({
     },
 }));
 const TrackInfoDialog = observer(function ({ model, onClose, }) {
-    const [label, setLabel] = useState('Copy to clipboard');
+    const { name, data } = model;
     const { classes } = useStyles();
-    return (React.createElement(Dialog, { open: true, onClose: onClose, fullWidth: true, maxWidth: "lg", title: `Track info - ${model.name}` },
-        React.createElement(DialogContent, null,
-            React.createElement(Button, { variant: "contained", color: "primary", onClick: () => {
-                    copy(model.data);
-                    setLabel('Copied!');
-                    setTimeout(() => {
-                        setLabel('Copy to clipboard');
-                    }, 300);
-                } }, label),
-            React.createElement("pre", { className: classes.textArea }, model.data)),
+    return (React.createElement(Dialog, { open: true, onClose: onClose, fullWidth: true, maxWidth: "lg", title: `Track info - ${name}` },
+        React.createElement(DialogContent, null, data === undefined ? (React.createElement(Typography, null, "This track has no text data.")) : (React.createElement(React.Fragment, null,
+            React.createElement(CopyButton, { text: data }),
+            React.createElement("pre", { className: classes.textArea }, data)))),
         React.createElement(DialogActions, null,
             React.createElement(Button, { variant: "contained", onClick: onClose, color: "secondary" }, "Close"))));
 });

package/dist/components/dialogs/TrackInfoDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TrackInfoDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/TrackInfoDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,8BAA8B,CAAA;AACzD,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAChF,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,UAAU,MAAM,kBAAmB,CAAA;AAI1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACzB,QAAQ,EAAE,MAAM;QAChB,UAAU,EAAE,MAAM;QAClB,SAAS,EAAE,YAAY;KACxB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAC5B,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,QACJ,OAAO,EAAE,OAAO,EAChB,SAAS,QACT,QAAQ,EAAC,IAAI,EACb,KAAK,EAAE,gBAAgB,IAAI,EAAE;QAE7B,oBAAC,aAAa,QAGX,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,CACpB,oBAAC,UAAU,uCAA0C,CACtD,CAAC,CAAC,CAAC,CACF;YACE,oBAAC,UAAU,IAAC,IAAI,EAAE,IAAI,GAAI;YAC1B,6BAAK,SAAS,EAAE,OAAO,CAAC,QAAQ,IAAG,IAAI,CAAO,CAC7C,CACJ,CACa;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAC,WAAW,YAEtD,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}

package/dist/components/header/FileMenu.js

@@ -5,7 +5,7 @@ import FolderOpen from '@mui/icons-material/FolderOpen';
 import Menu from '@mui/icons-material/Menu';
 import PhotoCamera from '@mui/icons-material/PhotoCamera';
 import { observer } from 'mobx-react';
-import { getDomainMenu } from './getDomainsMenu.js';
+import { getAnnotationsMenu } from './getAnnotationsMenu.js';
 const MetadataDialog = lazy(() => import('../dialogs/MetadataDialog.js'));
 const ExportSVGDialog = lazy(() => import('../dialogs/ExportSVGDialog.js'));
 const FileMenu = observer(({ model }) => {
@@ -31,9 +31,9 @@ const FileMenu = observer(({ model }) => {
                 },
             },
             {
-                label: 'Domain settings',
+                label: 'Annotations',
                 type: 'subMenu',
-                subMenu: getDomainMenu({
+                subMenu: getAnnotationsMenu({
                     model,
                 }),
             },

package/dist/components/header/FileMenu.js.map

@@ -1 +1 @@
-{"version":3,"file":"FileMenu.js","sourceRoot":"","sources":["../../../src/components/header/FileMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,WAAW,MAAM,iCAAiC,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAA;AAInD,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,8BAA+B,CAAC,CAAC,CAAA;AAC1E,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,+BAAgC,CAAC,CAAC,CAAA;AAE5E,MAAM,QAAQ,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IAC/D,OAAO,CACL,oBAAC,mBAAmB,mBACN,WAAW,EACvB,OAAO,EAAC,MAAM,EACd,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,uBAAuB;gBAC9B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,KAAK,EAAE,CAAA;gBACf,CAAC;aACF;YACD;gBACE,KAAK,EAAE,UAAU;gBACjB,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,cAAc;wBACd;4BACE,KAAK;4BACL,OAAO;yBACR;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;YACD;gBACE,KAAK,EAAE,iBAAiB;gBACxB,IAAI,EAAE,SAAS;gBACf,OAAO,EAAE,aAAa,CAAC;oBACrB,KAAK;iBACN,CAAC;aACH;YACD;gBACE,KAAK,EAAE,YAAY;gBACnB,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf;4BACE,OAAO;4BACP,KAAK;yBACN;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;SACF,EACD,YAAY,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,eAAe,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE;QAExD,oBAAC,IAAI,OAAG,CACY,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}
+{"version":3,"file":"FileMenu.js","sourceRoot":"","sources":["../../../src/components/header/FileMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,WAAW,MAAM,iCAAiC,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAA;AAI5D,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,8BAA+B,CAAC,CAAC,CAAA;AAC1E,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,+BAAgC,CAAC,CAAC,CAAA;AAE5E,MAAM,QAAQ,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IAC/D,OAAO,CACL,oBAAC,mBAAmB,mBACN,WAAW,EACvB,OAAO,EAAC,MAAM,EACd,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,uBAAuB;gBAC9B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,KAAK,EAAE,CAAA;gBACf,CAAC;aACF;YACD;gBACE,KAAK,EAAE,UAAU;gBACjB,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,cAAc;wBACd;4BACE,KAAK;4BACL,OAAO;yBACR;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;YACD;gBACE,KAAK,EAAE,aAAa;gBACpB,IAAI,EAAE,SAAS;gBACf,OAAO,EAAE,kBAAkB,CAAC;oBAC1B,KAAK;iBACN,CAAC;aACH;YACD;gBACE,KAAK,EAAE,YAAY;gBACnB,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf;4BACE,OAAO;4BACP,KAAK;yBACN;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;SACF,EACD,YAAY,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,EACxD,eAAe,EAAE,EAAE,QAAQ,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,EAAE;QAExD,oBAAC,IAAI,OAAG,CACY,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}

package/dist/components/header/GappynessSlider.js

@@ -8,7 +8,7 @@ const GappynessSlider = observer(function GappynessSlider({ model, }) {
     }
     return (React.createElement("div", { style: { display: 'flex', alignItems: 'center', gap: 8 } },
         React.createElement(Typography, { style: { whiteSpace: 'nowrap' } },
-            "Hide columns w/ >",
+            "Hide columns w/ \u2265",
             allowedGappyness,
             "% gaps"),
         React.createElement(Slider

package/dist/components/header/GappynessSlider.js.map

@@ -1 +1 @@
-{"version":3,"file":"GappynessSlider.js","sourceRoot":"","sources":["../../../src/components/header/GappynessSlider.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACxD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,GAAG,EAAE,CAAC,EAAE;QAC3D,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE;;YACpB,gBAAgB;qBAC1B;QACb,oBAAC,MAAM;QACL,wEAAwE;QACxE,wEAAwE;QACxE,yEAAyE;QACzE,wEAAwE;QACxE,oEAAoE;QACpE,yEAAyE;QACzE,sEAAsE;QACtE,kDAAkD;QAClD,EAAE;QACF,wEAAwE;QACxE,8DAA8D;QAC9D,oEAAoE;2BACxD,kBAAkB,EAC9B,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EACrB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,gBAAgB,EACvB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;YAChC,CAAC,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}
+{"version":3,"file":"GappynessSlider.js","sourceRoot":"","sources":["../../../src/components/header/GappynessSlider.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,eAAe,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACxD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,OAAO,IAAI,CAAA;IACb,CAAC;IACD,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,GAAG,EAAE,CAAC,EAAE;QAI3D,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,UAAU,EAAE,QAAQ,EAAE;;YACpB,gBAAgB;qBAC1B;QACb,oBAAC,MAAM;QACL,wEAAwE;QACxE,wEAAwE;QACxE,yEAAyE;QACzE,wEAAwE;QACxE,oEAAoE;QACpE,yEAAyE;QACzE,sEAAsE;QACtE,kDAAkD;QAClD,EAAE;QACF,wEAAwE;QACxE,8DAA8D;QAC9D,oEAAoE;2BACxD,kBAAkB,EAC9B,KAAK,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EACrB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,gBAAgB,EACvB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;gBACnB,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;YAChC,CAAC,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}

package/dist/components/header/{getDomainsMenu.d.ts → getAnnotationsMenu.d.ts}

@@ -1,5 +1,5 @@
 import type { MsaViewModel } from '../../model.ts';
-export declare function getDomainMenu({ model }: {
+export declare function getAnnotationsMenu({ model }: {
     model: MsaViewModel;
 }): ({
     label: string;

package/dist/components/header/{getDomainsMenu.js → getAnnotationsMenu.js}

@@ -5,17 +5,18 @@ import Search from '@mui/icons-material/Search';
 import Sort from '@mui/icons-material/Sort';
 import Visibility from '@mui/icons-material/Visibility';
 const FeatureFilterDialog = lazy(() => import('../dialogs/FeatureDialog.js'));
-const UserProvidedDomainsDialog = lazy(() => import('../dialogs/UserProvidedDomainsDialog.js'));
+const InterProScanFileDialog = lazy(() => import('../dialogs/InterProScanFileDialog.js'));
 const InterProScanDialog = lazy(() => import('../dialogs/InterProScanDialog.js'));
-export function getDomainMenu({ model }) {
+export function getAnnotationsMenu({ model }) {
     const { showDomains, actuallyShowDomains, subFeatureRows, noDomains } = model;
+    const noneLoaded = noDomains ? ' (none loaded)' : '';
     return [
         {
-            label: 'Open domains...',
+            label: 'Open InterProScan results...',
             icon: FolderOpen,
             onClick: () => {
                 model.queueDialog(handleClose => [
-                    UserProvidedDomainsDialog,
+                    InterProScanFileDialog,
                     {
                         handleClose,
                         model,
@@ -24,7 +25,7 @@ export function getDomainMenu({ model }) {
             },
         },
         {
-            label: 'Query InterProScan for domains...',
+            label: 'Query InterProScan...',
             icon: Search,
             onClick: () => {
                 model.queueDialog(handleClose => [
@@ -37,7 +38,7 @@ export function getDomainMenu({ model }) {
             },
         },
         {
-            label: `Show domains${noDomains ? ' (no domains loaded)' : ''}`,
+            label: `Show annotations${noneLoaded}`,
             disabled: noDomains,
             icon: Visibility,
             checked: actuallyShowDomains,
@@ -47,7 +48,7 @@ export function getDomainMenu({ model }) {
             },
         },
         {
-            label: `Use sub-row layout${noDomains ? ' (no domains loaded)' : ''}`,
+            label: `Use sub-row layout${noneLoaded}`,
             disabled: noDomains,
             checked: actuallyShowDomains ? subFeatureRows : false,
             icon: Sort,
@@ -57,7 +58,7 @@ export function getDomainMenu({ model }) {
             },
         },
         {
-            label: `Filter domains${noDomains ? ' (no domains loaded)' : ''}`,
+            label: `Filter annotations${noneLoaded}`,
             icon: FilterAlt,
             disabled: noDomains,
             onClick: () => {
@@ -72,4 +73,4 @@ export function getDomainMenu({ model }) {
         },
     ];
 }
-//# sourceMappingURL=getDomainsMenu.js.map
+//# sourceMappingURL=getAnnotationsMenu.js.map

package/dist/components/header/getAnnotationsMenu.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"getAnnotationsMenu.js","sourceRoot":"","sources":["../../../src/components/header/getAnnotationsMenu.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAE5B,OAAO,SAAS,MAAM,+BAA+B,CAAA;AACrD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,UAAU,MAAM,gCAAgC,CAAA;AAIvD,MAAM,mBAAmB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,6BAA8B,CAAC,CAAC,CAAA;AAC9E,MAAM,sBAAsB,GAAG,IAAI,CACjC,GAAG,EAAE,CAAC,MAAM,CAAC,sCAAuC,CAAC,CACtD,CAAA;AACD,MAAM,kBAAkB,GAAG,IAAI,CAC7B,GAAG,EAAE,CAAC,MAAM,CAAC,kCAAmC,CAAC,CAClD,CAAA;AAED,MAAM,UAAU,kBAAkB,CAAC,EAAE,KAAK,EAA2B;IACnE,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,cAAc,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC7E,MAAM,UAAU,GAAG,SAAS,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,EAAE,CAAA;IACpD,OAAO;QACL;YACE,KAAK,EAAE,8BAA8B;YACrC,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;oBAC/B,sBAAsB;oBACtB;wBACE,WAAW;wBACX,KAAK;qBACN;iBACF,CAAC,CAAA;YACJ,CAAC;SACF;QACD;YACE,KAAK,EAAE,uBAAuB;YAC9B,IAAI,EAAE,MAAM;YACZ,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;oBAC/B,kBAAkB;oBAClB;wBACE,WAAW;wBACX,KAAK;qBACN;iBACF,CAAC,CAAA;YACJ,CAAC;SACF;QACD;YACE,KAAK,EAAE,mBAAmB,UAAU,EAAE;YACtC,QAAQ,EAAE,SAAS;YACnB,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,mBAAmB;YAC5B,IAAI,EAAE,UAAmB;YACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,CAAC,CAAC,WAAW,CAAC,CAAA;YACpC,CAAC;SACF;QACD;YACE,KAAK,EAAE,qBAAqB,UAAU,EAAE;YACxC,QAAQ,EAAE,SAAS;YACnB,OAAO,EAAE,mBAAmB,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK;YACrD,IAAI,EAAE,IAAI;YACV,IAAI,EAAE,UAAmB;YACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;YAC1C,CAAC;SACF;QACD;YACE,KAAK,EAAE,qBAAqB,UAAU,EAAE;YACxC,IAAI,EAAE,SAAS;YACf,QAAQ,EAAE,SAAS;YACnB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;oBAC3B,mBAAmB;oBACnB;wBACE,OAAO;wBACP,KAAK;qBACN;iBACF,CAAC,CAAA;YACJ,CAAC;SACF;KACF,CAAA;AACH,CAAC"}

package/dist/components/header/settingsMenuItems.js

@@ -1,83 +1,50 @@
+function toggle(label, checked, set) {
+    return {
+        label,
+        type: 'checkbox',
+        checked,
+        onClick: () => {
+            set(!checked);
+        },
+    };
+}
 export function msaSettingsMenuItems(model) {
     const { drawMsaLetters, hideGaps, bgColor, showColumnStats } = model;
     return [
-        {
-            label: 'Show column statistics on hover',
-            type: 'checkbox',
-            checked: showColumnStats,
-            onClick: () => {
-                model.setShowColumnStats(!showColumnStats);
-            },
-        },
-        {
-            label: 'Draw letters',
-            type: 'checkbox',
-            checked: drawMsaLetters,
-            onClick: () => {
-                model.setDrawMsaLetters(!drawMsaLetters);
-            },
-        },
-        {
-            label: 'Color letters instead of background of tiles',
-            type: 'checkbox',
-            checked: !bgColor,
-            onClick: () => {
-                model.setBgColor(!bgColor);
-            },
-        },
-        {
-            label: 'Enable hiding gappy columns?',
-            type: 'checkbox',
-            checked: hideGaps,
-            onClick: () => {
-                model.setHideGaps(!hideGaps);
-            },
-        },
+        toggle('Show column statistics on hover', showColumnStats, arg => {
+            model.setShowColumnStats(arg);
+        }),
+        toggle('Draw letters', drawMsaLetters, arg => {
+            model.setDrawMsaLetters(arg);
+        }),
+        // the checkbox reads as the inverse of the property it sets: bgColor draws
+        // the tile, and turning it off is what leaves the letter itself colored
+        toggle('Color letters instead of background of tiles', !bgColor, arg => {
+            model.setBgColor(!arg);
+        }),
+        toggle('Enable hiding gappy columns?', hideGaps, arg => {
+            model.setHideGaps(arg);
+        }),
     ];
 }
 export function treeSettingsMenuItems(model) {
     const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, drawLabels, } = model;
     return [
-        {
-            label: 'Show branch length',
-            type: 'checkbox',
-            checked: showBranchLen,
-            onClick: () => {
-                model.setShowBranchLen(!showBranchLen);
-            },
-        },
-        {
-            label: 'Show tree',
-            type: 'checkbox',
-            checked: drawTree,
-            onClick: () => {
-                model.setDrawTree(!drawTree);
-            },
-        },
-        {
-            label: 'Draw clickable bubbles on tree branches',
-            type: 'checkbox',
-            checked: drawNodeBubbles,
-            onClick: () => {
-                model.setDrawNodeBubbles(!drawNodeBubbles);
-            },
-        },
-        {
-            label: 'Tree labels align right',
-            type: 'checkbox',
-            checked: labelsAlignRight,
-            onClick: () => {
-                model.setLabelsAlignRight(!labelsAlignRight);
-            },
-        },
-        {
-            label: 'Draw labels',
-            type: 'checkbox',
-            checked: drawLabels,
-            onClick: () => {
-                model.setDrawLabels(!drawLabels);
-            },
-        },
+        toggle('Show branch length', showBranchLen, arg => {
+            model.setShowBranchLen(arg);
+        }),
+        toggle('Show tree', drawTree, arg => {
+            model.setDrawTree(arg);
+        }),
+        toggle('Draw clickable bubbles on tree branches', drawNodeBubbles, arg => {
+            model.setDrawNodeBubbles(arg);
+        }),
+        toggle('Tree labels align right', labelsAlignRight, arg => {
+            model.setLabelsAlignRight(arg);
+        }),
+        toggle('Draw labels', drawLabels, arg => {
+            model.setDrawLabels(arg);
+        }),
     ];
 }
 //# sourceMappingURL=settingsMenuItems.js.map

package/dist/components/header/settingsMenuItems.js.map

@@ -1 +1 @@
-{"version":3,"file":"settingsMenuItems.js","sourceRoot":"","sources":["../../../src/components/header/settingsMenuItems.ts"],"names":[],"mappings":"AAGA,MAAM,UAAU,oBAAoB,CAAC,KAAmB;IACtD,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACpE,OAAO;QACL;YACE,KAAK,EAAE,iCAAiC;YACxC,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,eAAe;YACxB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,kBAAkB,CAAC,CAAC,eAAe,CAAC,CAAA;YAC5C,CAAC;SACF;QACD;YACE,KAAK,EAAE,cAAc;YACrB,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,cAAc;YACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;YAC1C,CAAC;SACF;QACD;YACE,KAAK,EAAE,8CAA8C;YACrD,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,CAAC,OAAO;YACjB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,UAAU,CAAC,CAAC,OAAO,CAAC,CAAA;YAC5B,CAAC;SACF;QACD;YACE,KAAK,EAAE,8BAA8B;YACrC,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,QAAQ;YACjB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;YAC9B,CAAC;SACF;KACF,CAAA;AACH,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,KAAmB;IACvD,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,UAAU,GACX,GAAG,KAAK,CAAA;IACT,OAAO;QACL;YACE,KAAK,EAAE,oBAAoB;YAC3B,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,aAAa;YACtB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;YACxC,CAAC;SACF;QACD;YACE,KAAK,EAAE,WAAW;YAClB,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,QAAQ;YACjB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;YAC9B,CAAC;SACF;QACD;YACE,KAAK,EAAE,yCAAyC;YAChD,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,eAAe;YACxB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,kBAAkB,CAAC,CAAC,eAAe,CAAC,CAAA;YAC5C,CAAC;SACF;QACD;YACE,KAAK,EAAE,yBAAyB;YAChC,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,gBAAgB;YACzB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,mBAAmB,CAAC,CAAC,gBAAgB,CAAC,CAAA;YAC9C,CAAC;SACF;QACD;YACE,KAAK,EAAE,aAAa;YACpB,IAAI,EAAE,UAAU;YAChB,OAAO,EAAE,UAAU;YACnB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,aAAa,CAAC,CAAC,UAAU,CAAC,CAAA;YAClC,CAAC;SACF;KACF,CAAA;AACH,CAAC"}
+{"version":3,"file":"settingsMenuItems.js","sourceRoot":"","sources":["../../../src/components/header/settingsMenuItems.ts"],"names":[],"mappings":"AAGA,SAAS,MAAM,CAAC,KAAa,EAAE,OAAgB,EAAE,GAA2B;IAC1E,OAAO;QACL,KAAK;QACL,IAAI,EAAE,UAAmB;QACzB,OAAO;QACP,OAAO,EAAE,GAAG,EAAE;YACZ,GAAG,CAAC,CAAC,OAAO,CAAC,CAAA;QACf,CAAC;KACF,CAAA;AACH,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,KAAmB;IACtD,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IACpE,OAAO;QACL,MAAM,CAAC,iCAAiC,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YAC/D,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,cAAc,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE;YAC3C,KAAK,CAAC,iBAAiB,CAAC,GAAG,CAAC,CAAA;QAC9B,CAAC,CAAC;QACF,2EAA2E;QAC3E,wEAAwE;QACxE,MAAM,CAAC,8CAA8C,EAAE,CAAC,OAAO,EAAE,GAAG,CAAC,EAAE;YACrE,KAAK,CAAC,UAAU,CAAC,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,8BAA8B,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YACrD,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;KACH,CAAA;AACH,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,KAAmB;IACvD,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,UAAU,GACX,GAAG,KAAK,CAAA;IACT,OAAO;QACL,MAAM,CAAC,oBAAoB,EAAE,aAAa,EAAE,GAAG,CAAC,EAAE;YAChD,KAAK,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAA;QAC7B,CAAC,CAAC;QACF,MAAM,CAAC,WAAW,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE;YAClC,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;QACxB,CAAC,CAAC;QACF,MAAM,CAAC,yCAAyC,EAAE,eAAe,EAAE,GAAG,CAAC,EAAE;YACvE,KAAK,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAA;QAC/B,CAAC,CAAC;QACF,MAAM,CAAC,yBAAyB,EAAE,gBAAgB,EAAE,GAAG,CAAC,EAAE;YACxD,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;QAChC,CAAC,CAAC;QACF,MAAM,CAAC,aAAa,EAAE,UAAU,EAAE,GAAG,CAAC,EAAE;YACtC,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,CAAA;QAC1B,CAAC,CAAC;KACH,CAAA;AACH,CAAC"}

package/dist/components/import/ImportForm.js

@@ -28,7 +28,7 @@ const ImportForm = observer(function ({ model }) {
                     React.createElement(Typography, null, "Tree file or URL"),
                     React.createElement(FileSelector, { location: treeFile, setLocation: setTreeFile })),
                 React.createElement("div", null,
-                    React.createElement(Typography, null, "InterProScan GFF file or URL (optional)"),
+                    React.createElement(Typography, null, "Annotation GFF file or URL (optional)"),
                     React.createElement(FileSelector, { location: gffFile, setLocation: setGffFile }))),
             React.createElement("div", null,
                 React.createElement(Button, { onClick: () => {

package/dist/components/import/ImportForm.js.map

@@ -1 +1 @@
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