react-msaview 5.4.1 → 5.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (180) hide show
  1. package/LICENSE +21 -0
  2. package/bundle/index.js +487 -149
  3. package/bundle/index.js.map +7 -1
  4. package/dist/colorSchemes.js +11 -7
  5. package/dist/colorSchemes.js.map +1 -1
  6. package/dist/components/ConservationTrack.js +20 -26
  7. package/dist/components/ConservationTrack.js.map +1 -1
  8. package/dist/components/MSAViewer.d.ts +13 -1
  9. package/dist/components/MSAViewer.js +13 -7
  10. package/dist/components/MSAViewer.js.map +1 -1
  11. package/dist/components/SequenceTextArea.js +1 -1
  12. package/dist/components/SequenceTextArea.js.map +1 -1
  13. package/dist/components/TextTrack.js +20 -27
  14. package/dist/components/TextTrack.js.map +1 -1
  15. package/dist/components/Track.js +9 -6
  16. package/dist/components/Track.js.map +1 -1
  17. package/dist/components/dialogs/FeatureDialog.js +27 -23
  18. package/dist/components/dialogs/FeatureDialog.js.map +1 -1
  19. package/dist/components/dialogs/TrackInfoDialog.js +1 -1
  20. package/dist/components/dialogs/TrackInfoDialog.js.map +1 -1
  21. package/dist/components/header/ColorSchemeMenu.js +1 -1
  22. package/dist/components/header/ColorSchemeMenu.js.map +1 -1
  23. package/dist/components/header/FileMenu.js +1 -16
  24. package/dist/components/header/FileMenu.js.map +1 -1
  25. package/dist/components/header/Header.js +6 -5
  26. package/dist/components/header/Header.js.map +1 -1
  27. package/dist/components/header/HeaderInfoArea.js +1 -1
  28. package/dist/components/header/HeaderInfoArea.js.map +1 -1
  29. package/dist/components/header/HeaderStatusArea.js +1 -1
  30. package/dist/components/header/HeaderStatusArea.js.map +1 -1
  31. package/dist/components/header/MSASettingsMenu.js +1 -1
  32. package/dist/components/header/MSASettingsMenu.js.map +1 -1
  33. package/dist/components/header/MultiAlignmentSelector.js +0 -0
  34. package/dist/components/header/MultiAlignmentSelector.js.map +1 -1
  35. package/dist/components/header/TreeSettingsMenu.js +1 -1
  36. package/dist/components/header/TreeSettingsMenu.js.map +1 -1
  37. package/dist/components/header/ZoomControls.js +14 -12
  38. package/dist/components/header/ZoomControls.js.map +1 -1
  39. package/dist/components/header/ZoomMenu.js +1 -10
  40. package/dist/components/header/ZoomMenu.js.map +1 -1
  41. package/dist/components/header/settingsMenuItems.js +9 -1
  42. package/dist/components/header/settingsMenuItems.js.map +1 -1
  43. package/dist/components/{header/HeaderMenu.d.ts → msa/ColumnStats.d.ts} +3 -3
  44. package/dist/components/msa/ColumnStats.js +42 -0
  45. package/dist/components/msa/ColumnStats.js.map +1 -0
  46. package/dist/components/msa/DomainLegend.d.ts +6 -0
  47. package/dist/components/msa/DomainLegend.js +41 -0
  48. package/dist/components/msa/DomainLegend.js.map +1 -0
  49. package/dist/components/msa/MSACanvasBlock.js +41 -29
  50. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  51. package/dist/components/msa/MSAMouseoverCanvas.js +6 -12
  52. package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
  53. package/dist/components/msa/MSAPanel.js +3 -1
  54. package/dist/components/msa/MSAPanel.js.map +1 -1
  55. package/dist/components/msa/renderBoxFeatureCanvasBlock.js +60 -14
  56. package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -1
  57. package/dist/components/msa/renderMSABlock.js +3 -3
  58. package/dist/components/msa/renderMSABlock.js.map +1 -1
  59. package/dist/components/msa/renderMSAMouseover.js +33 -6
  60. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  61. package/dist/components/overlayColors.d.ts +3 -0
  62. package/dist/components/overlayColors.js +11 -0
  63. package/dist/components/overlayColors.js.map +1 -0
  64. package/dist/components/renderCtx.d.ts +1 -1
  65. package/dist/components/tracks/renderTracksSvg.d.ts +6 -3
  66. package/dist/components/tracks/renderTracksSvg.js +20 -11
  67. package/dist/components/tracks/renderTracksSvg.js.map +1 -1
  68. package/dist/components/tree/TreeCanvas.js +31 -38
  69. package/dist/components/tree/TreeCanvas.js.map +1 -1
  70. package/dist/components/tree/TreeCanvasBlock.js +12 -47
  71. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  72. package/dist/components/tree/clickMap.d.ts +24 -0
  73. package/dist/components/tree/clickMap.js +33 -0
  74. package/dist/components/tree/clickMap.js.map +1 -0
  75. package/dist/components/tree/renderTreeCanvas.d.ts +1 -21
  76. package/dist/components/tree/renderTreeCanvas.js +8 -7
  77. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  78. package/dist/constants.d.ts +4 -0
  79. package/dist/constants.js +17 -0
  80. package/dist/constants.js.map +1 -1
  81. package/dist/createPaletteMap.d.ts +5 -2
  82. package/dist/createPaletteMap.js +15 -5
  83. package/dist/createPaletteMap.js.map +1 -1
  84. package/dist/fetchUtils.d.ts +2 -1
  85. package/dist/fetchUtils.js +3 -2
  86. package/dist/fetchUtils.js.map +1 -1
  87. package/dist/index.d.ts +1 -1
  88. package/dist/launchInterProScan.d.ts +2 -0
  89. package/dist/launchInterProScan.js.map +1 -1
  90. package/dist/model/msaModel.d.ts +25 -2
  91. package/dist/model/msaModel.js +15 -3
  92. package/dist/model/msaModel.js.map +1 -1
  93. package/dist/model/treeModel.d.ts +46 -5
  94. package/dist/model/treeModel.js +20 -7
  95. package/dist/model/treeModel.js.map +1 -1
  96. package/dist/model.d.ts +641 -133
  97. package/dist/model.js +191 -77
  98. package/dist/model.js.map +1 -1
  99. package/dist/propertyConservation.d.ts +7 -0
  100. package/dist/propertyConservation.js +66 -0
  101. package/dist/propertyConservation.js.map +1 -0
  102. package/dist/renderToSvg.js +104 -74
  103. package/dist/renderToSvg.js.map +1 -1
  104. package/dist/types.d.ts +4 -1
  105. package/dist/{webpack.js → umd.js} +1 -1
  106. package/dist/umd.js.map +1 -0
  107. package/dist/useCanvasAutorun.d.ts +2 -0
  108. package/dist/useCanvasAutorun.js +23 -0
  109. package/dist/useCanvasAutorun.js.map +1 -0
  110. package/dist/version.d.ts +1 -1
  111. package/dist/version.js +1 -1
  112. package/package.json +7 -8
  113. package/src/colorSchemes.docs.test.ts +55 -0
  114. package/src/colorSchemes.ts +12 -7
  115. package/src/columnStats.test.ts +94 -0
  116. package/src/components/ConservationTrack.tsx +17 -15
  117. package/src/components/MSAViewer.tsx +42 -18
  118. package/src/components/SequenceTextArea.tsx +1 -1
  119. package/src/components/TextTrack.tsx +7 -11
  120. package/src/components/Track.tsx +9 -6
  121. package/src/components/dialogs/FeatureDialog.tsx +62 -48
  122. package/src/components/dialogs/TrackInfoDialog.tsx +1 -1
  123. package/src/components/header/ColorSchemeMenu.tsx +1 -0
  124. package/src/components/header/FileMenu.tsx +1 -15
  125. package/src/components/header/Header.tsx +11 -8
  126. package/src/components/header/HeaderInfoArea.tsx +1 -1
  127. package/src/components/header/HeaderStatusArea.tsx +1 -1
  128. package/src/components/header/MSASettingsMenu.tsx +1 -0
  129. package/src/components/header/MultiAlignmentSelector.tsx +0 -0
  130. package/src/components/header/TreeSettingsMenu.tsx +1 -0
  131. package/src/components/header/ZoomControls.tsx +24 -17
  132. package/src/components/header/ZoomMenu.tsx +1 -10
  133. package/src/components/header/settingsMenuItems.ts +9 -1
  134. package/src/components/msa/ColumnStats.tsx +54 -0
  135. package/src/components/msa/DomainLegend.tsx +78 -0
  136. package/src/components/msa/MSACanvasBlock.tsx +46 -25
  137. package/src/components/msa/MSAMouseoverCanvas.tsx +10 -13
  138. package/src/components/msa/MSAPanel.tsx +2 -0
  139. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +75 -17
  140. package/src/components/msa/renderMSABlock.ts +3 -3
  141. package/src/components/msa/renderMSAMouseover.ts +34 -6
  142. package/src/components/overlayColors.ts +12 -0
  143. package/src/components/renderCtx.ts +1 -0
  144. package/src/components/tracks/renderTracksSvg.ts +25 -11
  145. package/src/components/tree/TreeCanvas.tsx +47 -54
  146. package/src/components/tree/TreeCanvasBlock.tsx +10 -68
  147. package/src/components/tree/clickMap.ts +55 -0
  148. package/src/components/tree/renderTreeCanvas.ts +10 -34
  149. package/src/constants.ts +19 -0
  150. package/src/createPaletteMap.ts +18 -5
  151. package/src/fetchUtils.ts +6 -3
  152. package/src/index.ts +1 -1
  153. package/src/launchInterProScan.ts +3 -1
  154. package/src/model/msaModel.ts +21 -3
  155. package/src/model/treeModel.ts +21 -7
  156. package/src/model.ts +221 -119
  157. package/src/propertyConservation.test.ts +47 -0
  158. package/src/propertyConservation.ts +73 -0
  159. package/src/renderDomainLegendSvg.test.tsx +134 -0
  160. package/src/renderToSvg.tsx +210 -147
  161. package/src/segmentOverlay.test.ts +70 -0
  162. package/src/stripDefaultSnapshot.test.ts +54 -0
  163. package/src/types.ts +7 -1
  164. package/src/useCanvasAutorun.ts +28 -0
  165. package/src/version.ts +1 -1
  166. package/bundle/index.js.LICENSE.txt +0 -100
  167. package/dist/components/dialogs/SettingsDialog.d.ts +0 -7
  168. package/dist/components/dialogs/SettingsDialog.js +0 -100
  169. package/dist/components/dialogs/SettingsDialog.js.map +0 -1
  170. package/dist/components/header/HeaderMenu.js +0 -27
  171. package/dist/components/header/HeaderMenu.js.map +0 -1
  172. package/dist/components/util.d.ts +0 -1
  173. package/dist/components/util.js +0 -7
  174. package/dist/components/util.js.map +0 -1
  175. package/dist/webpack.js.map +0 -1
  176. package/src/components/dialogs/SettingsDialog.tsx +0 -234
  177. package/src/components/header/HeaderMenu.tsx +0 -38
  178. package/src/components/util.ts +0 -9
  179. /package/dist/{webpack.d.ts → umd.d.ts} +0 -0
  180. /package/src/{webpack.ts → umd.ts} +0 -0

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