react-msaview 5.0.7 → 5.0.13

package/dist/components/msa/MSACanvas.js

@@ -1,94 +1,23 @@
-import React, { useEffect, useRef, useState } from 'react';
+import React, { useCallback, useRef } from 'react';
 import { observer } from 'mobx-react';
 import Loading from "./Loading.js";
 import MSACanvasBlock from "./MSACanvasBlock.js";
+import { useWheelScroll } from "../../useWheelScroll.js";
 const MSACanvas = observer(function ({ model }) {
     const { MSA, verticalScrollbarWidth, msaFilehandle, height, msaAreaWidth, blocks2d, } = model;
     const ref = useRef(null);
-    // wheel
-    const scheduled = useRef(false);
-    const deltaX = useRef(0);
-    const deltaY = useRef(0);
-    // mouse click-and-drag scrolling
-    const prevX = useRef(0);
-    const prevY = useRef(0);
-    const [mouseDragging, setMouseDragging] = useState(false);
-    useEffect(() => {
-        const curr = ref.current;
-        if (!curr) {
-            return;
-        }
-        function onWheel(event) {
-            deltaX.current += event.deltaX;
-            deltaY.current += event.deltaY;
-            if (!scheduled.current) {
-                scheduled.current = true;
-                requestAnimationFrame(() => {
-                    model.doScrollX(-deltaX.current);
-                    model.doScrollY(-deltaY.current);
-                    deltaX.current = 0;
-                    deltaY.current = 0;
-                    scheduled.current = false;
-                });
-            }
-            event.preventDefault();
-            event.stopPropagation();
-        }
-        curr.addEventListener('wheel', onWheel, { passive: false });
-        return () => {
-            curr.removeEventListener('wheel', onWheel);
-        };
+    const onScrollX = useCallback((d) => {
+        model.doScrollX(d);
     }, [model]);
-    useEffect(() => {
-        if (mouseDragging) {
-            function globalMouseMove(event) {
-                event.preventDefault();
-                const currX = event.clientX;
-                const currY = event.clientY;
-                const distanceX = currX - prevX.current;
-                const distanceY = currY - prevY.current;
-                if (distanceX || distanceY) {
-                    if (!scheduled.current) {
-                        scheduled.current = true;
-                        window.requestAnimationFrame(() => {
-                            model.doScrollX(distanceX);
-                            model.doScrollY(distanceY);
-                            scheduled.current = false;
-                            prevX.current = event.clientX;
-                            prevY.current = event.clientY;
-                        });
-                    }
-                }
-            }
-            function globalMouseUp() {
-                prevX.current = 0;
-                setMouseDragging(false);
-            }
-            window.addEventListener('mousemove', globalMouseMove, true);
-            window.addEventListener('mouseup', globalMouseUp, true);
-            return () => {
-                window.removeEventListener('mousemove', globalMouseMove, true);
-                window.removeEventListener('mouseup', globalMouseUp, true);
-            };
-        }
-        return undefined;
-    }, [model, mouseDragging]);
-    return (React.createElement("div", { ref: ref, onMouseDown: event => {
-            // check if clicking a draggable element or a resize handle
-            const target = event.target;
-            if (target.draggable || target.dataset.resizer) {
-                return;
-            }
-            // otherwise do click and drag scroll
-            if (event.button === 0) {
-                prevX.current = event.clientX;
-                prevY.current = event.clientY;
-                setMouseDragging(true);
-            }
-        }, onMouseUp: event => {
-            event.preventDefault();
-            setMouseDragging(false);
-        }, onMouseLeave: event => {
+    const onScrollY = useCallback((d) => {
+        model.doScrollY(d);
+    }, [model]);
+    const { onMouseDown, onMouseUp } = useWheelScroll({
+        ref,
+        onScrollX,
+        onScrollY,
+    });
+    return (React.createElement("div", { ref: ref, onMouseDown: onMouseDown, onMouseUp: onMouseUp, onMouseLeave: event => {
             event.preventDefault();
         }, style: {
             position: 'relative',

package/dist/components/msa/MSACanvas.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MSACanvas.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,OAAO,MAAM,cAAe,CAAA;AACnC,OAAO,cAAc,MAAM,qBAAsB,CAAA;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAA;AAIxD,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,EACJ,GAAG,EACH,sBAAsB,EACtB,aAAa,EACb,MAAM,EACN,YAAY,EACZ,QAAQ,GACT,GAAG,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,SAAS,GAAG,WAAW,CAC3B,CAAC,CAAS,EAAE,EAAE;QACZ,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAA;IACpB,CAAC,EACD,CAAC,KAAK,CAAC,CACR,CAAA;IACD,MAAM,EAAE,WAAW,EAAE,SAAS,EAAE,GAAG,cAAc,CAAC;QAChD,GAAG;QACH,SAAS;QACT,SAAS;KACV,CAAC,CAAA;IAEF,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,SAAS,EACpB,YAAY,EAAE,KAAK,CAAC,EAAE;YACpB,KAAK,CAAC,cAAc,EAAE,CAAA;QACxB,CAAC,EACD,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM;YACN,KAAK,EAAE,YAAY,GAAG,sBAAsB;YAC5C,QAAQ,EAAE,QAAQ;SACnB,IAEA,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CACrC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CACzB,oBAAC,cAAc,IACb,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,EAClB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,EAAE,EACX,OAAO,EAAE,EAAE,GACX,CACH,CAAC,CACH,CAAC,CAAC,CAAC,CACF,oBAAC,OAAO,OAAG,CACZ,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}

package/dist/components/msa/MSACanvasBlock.js

@@ -19,8 +19,7 @@ const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
         return autorun(() => {
             ctx.resetTransform();
             ctx.clearRect(0, 0, blockSize * highResScaleFactor, blockSize * highResScaleFactor);
-            const { actuallyShowDomains } = model;
-            if (actuallyShowDomains) {
+            if (model.actuallyShowDomains) {
                 renderBoxFeatureCanvasBlock({
                     ctx,
                     offsetX,
@@ -64,7 +63,6 @@ const MSACanvasBlock = observer(function ({ model, offsetX, offsetY, }) {
                     model.setMousePos(x, y);
                 }
                 else {
-                    // Clear mouse position when outside bounds
                     model.setMousePos(undefined, undefined);
                 }
             }, onClick: event => {

package/dist/components/msa/MSACanvasBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MSACanvasBlock.js","sourceRoot":"","sources":["../../../src/components/msa/MSACanvasBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEnE,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAA;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,2BAA2B,EAAE,MAAM,kCAAkC,CAAA;AAC9E,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAA;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAI7C,MAAM,cAAc,GAAG,QAAQ,CAAC,UAAU,EACxC,KAAK,EACL,OAAO,EACP,OAAO,GAKR;IACC,MAAM,EACJ,QAAQ,EACR,SAAS,EACT,OAAO,EACP,OAAO,EACP,WAAW,EACX,SAAS,EACT,aAAa,EACb,aAAa,EACb,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IAExB,MAAM,cAAc,GAAG,OAAO,CAC5B,GAAG,EAAE,CAAC,aAAa,CAAC,WAAW,EAAE,KAAK,CAAC,EACvC,CAAC,WAAW,EAAE,KAAK,CAAC,CACrB,CAAA;IAED,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QACzC,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QACD,OAAO,OAAO,CAAC,GAAG,EAAE;YAClB,GAAG,CAAC,cAAc,EAAE,CAAA;YACpB,GAAG,CAAC,SAAS,CACX,CAAC,EACD,CAAC,EACD,SAAS,GAAG,kBAAkB,EAC9B,SAAS,GAAG,kBAAkB,CAC/B,CAAA;YACD,IAAI,KAAK,CAAC,mBAAmB,EAAE,CAAC;gBAC9B,2BAA2B,CAAC;oBAC1B,GAAG;oBACH,OAAO;oBACP,OAAO;oBACP,KAAK;iBACN,CAAC,CAAA;YACJ,CAAC;YACD,cAAc,CAAC;gBACb,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,OAAO;gBACP,cAAc;gBACd,KAAK;aACN,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC,EAAE;QACD,KAAK;QACL,OAAO;QACP,OAAO;QACP,KAAK;QACL,SAAS;QACT,kBAAkB;QAClB,cAAc;KACf,CAAC,CAAA;IAEF,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,EAA4B,CAAA;IAC9E,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IAElC,OAAO,CACL;QACE,gCACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;oBACjB,OAAM;gBACR,CAAC;gBACD,gBAAgB,CAAC,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,CAAA;gBACxD,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAA;gBACzD,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,GAAG,OAAO,CAAA;gBAC7C,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,GAAG,OAAO,CAAA;gBAC5C,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,QAAQ,CAAC,CAAA;gBACvC,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,SAAS,CAAC,CAAA;gBAExC,qDAAqD;gBACrD,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC,UAAU,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC,OAAO,EAAE,CAAC;oBAClE,KAAK,CAAC,WAAW,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;gBACzB,CAAC;qBAAM,CAAC;oBACN,KAAK,CAAC,WAAW,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;gBACzC,CAAC;YACH,CAAC,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;oBACjB,OAAM;gBACR,CAAC;gBACD,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAA;gBACzD,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,GAAG,OAAO,CAAA;gBAC7C,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,GAAG,OAAO,CAAA;gBAC5C,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,QAAQ,CAAC,CAAA;gBACvC,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,SAAS,CAAC,CAAA;gBACxC,IAAI,CAAC,KAAK,aAAa,IAAI,CAAC,KAAK,aAAa,EAAE,CAAC;oBAC/C,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;gBAC9C,CAAC;qBAAM,CAAC;oBACN,KAAK,CAAC,gBAAgB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;gBAC9B,CAAC;YACH,CAAC,EACD,YAAY,EAAE,GAAG,EAAE;gBACjB,KAAK,CAAC,WAAW,EAAE,CAAA;gBACnB,gBAAgB,CAAC,SAAS,CAAC,CAAA;YAC7B,CAAC,EACD,KAAK,EAAE,SAAS,GAAG,kBAAkB,EACrC,MAAM,EAAE,SAAS,GAAG,kBAAkB,EACtC,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,OAAO,GAAG,OAAO;gBACtB,IAAI,EAAE,OAAO,GAAG,OAAO;gBACvB,KAAK,EAAE,SAAS;gBAChB,MAAM,EAAE,SAAS;aAClB,GACD;QACD,gBAAgB,IAAI,aAAa,CAAC,CAAC,CAAC,CACnC,oBAAC,WAAW,IACV,WAAW,EAAE,EAAE,CAAC,EAAE,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,aAAa,CAAC,CAAC,GAAG,EAAE,EAAE;;YAEhD,gBAAgB,CAAC,OAAO,CAAC,MAAM;YAC1C,KAAK,CAAC,YAAY,KAAK,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI;;YAAI,GAAG;YACnD,gBAAgB,CAAC,OAAO,CAAC,MAAM,GAAG,EAAE;gBACnC,CAAC,CAAC,GAAG,gBAAgB,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK;gBAC/C,CAAC,CAAC,gBAAgB,CAAC,OAAO,CAChB,CACf,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}

package/dist/components/msa/renderMSABlock.js

@@ -82,7 +82,7 @@ function drawTiles({ model, offsetX, ctx, visibleLeaves, theme, xStart, xEnd, })
     }
 }
 function drawText({ model, offsetX, contrastScheme, ctx, visibleLeaves, xStart, xEnd, }) {
-    const { bgColor, actuallyShowDomains, showMsaLetters, colorScheme, columns, colWidth, contrastLettering, rowHeight, relativeTo, } = model;
+    const { bgColor, actuallyShowDomains, showMsaLetters, colorScheme, columns, colWidth, rowHeight, relativeTo, } = model;
     // Get reference sequence if relativeTo is set
     const referenceSeq = relativeTo
         ? columns[relativeTo]?.slice(xStart, xEnd)
@@ -104,9 +104,7 @@ function drawText({ model, offsetX, contrastScheme, ctx, visibleLeaves, xStart,
                     // Show dot for matching positions, original letter for differences
                     const displayLetter = isMatchingReference ? '.' : letter;
                     const color = colorScheme[letter.toUpperCase()];
-                    const contrast = contrastLettering
-                        ? contrastScheme[letter.toUpperCase()] || 'black'
-                        : 'black';
+                    const contrast = contrastScheme[letter.toUpperCase()] || 'black';
                     // note: -rowHeight/4 matches +rowHeight/4 in tree
                     ctx.fillStyle = actuallyShowDomains
                         ? 'black'

package/dist/components/msa/renderMSABlock.js.map

@@ -1 +1 @@
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package/dist/components/msa/renderMSAMouseover.js

@@ -3,9 +3,7 @@ const highlightColor = 'rgba(128,128,0,0.2)';
 const referenceColor = 'rgba(0,128,255,0.3)'; // Blue highlight for reference row
 const multiRowHoverColor = 'rgba(255,165,0,0.15)'; // Orange highlight for multi-row tree hover
 export function renderMouseover({ ctx, model, }) {
-    const { mouseCol, colWidth, msaAreaWidth, verticalScrollbarWidth, height, rowHeight, scrollX, scrollY, mouseRow, 
-    // @ts-expect-error
-    mouseCol2, mouseClickRow, mouseClickCol, relativeTo, rowNamesSet, hoveredTreeNode, highlightedColumns, } = model;
+    const { mouseCol, colWidth, msaAreaWidth, verticalScrollbarWidth, height, rowHeight, scrollX, scrollY, mouseRow, mouseClickRow, mouseClickCol, relativeTo, rowNamesSet, hoveredTreeNode, highlightedColumns, } = model;
     const width = msaAreaWidth - verticalScrollbarWidth;
     ctx.resetTransform();
     ctx.clearRect(0, 0, width, height);
@@ -50,9 +48,5 @@ export function renderMouseover({ ctx, model, }) {
         ctx.fillStyle = highlightColor;
         ctx.fillRect(0, mouseClickRow * rowHeight + scrollY, width, rowHeight);
     }
-    if (mouseCol2 !== undefined) {
-        ctx.fillStyle = highlightColor;
-        ctx.fillRect(mouseCol2 * colWidth + scrollX, 0, colWidth, height);
-    }
 }
 //# sourceMappingURL=renderMSAMouseover.js.map

package/dist/components/msa/renderMSAMouseover.js.map

@@ -1 +1 @@
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package/dist/components/tree/TreeCanvas.js

@@ -1,73 +1,20 @@
-import React, { useEffect, useRef, useState } from 'react';
+import React, { useCallback, useEffect, useRef } from 'react';
 import { isAlive } from '@jbrowse/mobx-state-tree';
 import { autorun } from 'mobx';
 import { observer } from 'mobx-react';
 import TreeCanvasBlock from "./TreeCanvasBlock.js";
 import { padding } from "./renderTreeCanvas.js";
+import { useWheelScroll } from "../../useWheelScroll.js";
+const referenceColor = 'rgba(0,128,255,0.3)';
+const treeHoverColor = 'rgba(255,165,0,0.2)';
 const TreeCanvas = observer(function ({ model }) {
     const ref = useRef(null);
     const mouseoverRef = useRef(null);
-    const scheduled = useRef(false);
-    const deltaY = useRef(0);
-    const prevY = useRef(0);
     const { treeWidth, height, blocksY, treeAreaWidth } = model;
-    const [mouseDragging, setMouseDragging] = useState(false);
-    useEffect(() => {
-        const curr = ref.current;
-        if (!curr) {
-            return;
-        }
-        function onWheel(event) {
-            deltaY.current += event.deltaY;
-            if (!scheduled.current) {
-                scheduled.current = true;
-                requestAnimationFrame(() => {
-                    model.doScrollY(-deltaY.current);
-                    deltaY.current = 0;
-                    scheduled.current = false;
-                });
-            }
-            event.preventDefault();
-            event.stopPropagation();
-        }
-        curr.addEventListener('wheel', onWheel, { passive: false });
-        return () => {
-            curr.removeEventListener('wheel', onWheel);
-        };
+    const onScrollY = useCallback((d) => {
+        model.doScrollY(d);
     }, [model]);
-    useEffect(() => {
-        if (mouseDragging) {
-            function globalMouseMove(event) {
-                event.preventDefault();
-                const currY = event.clientY;
-                const distanceY = currY - prevY.current;
-                if (distanceY) {
-                    if (!scheduled.current) {
-                        scheduled.current = true;
-                        window.requestAnimationFrame(() => {
-                            model.doScrollY(distanceY);
-                            scheduled.current = false;
-                            prevY.current = event.clientY;
-                        });
-                    }
-                }
-            }
-            function globalMouseUp() {
-                prevY.current = 0;
-                setMouseDragging(false);
-            }
-            window.addEventListener('mousemove', globalMouseMove, true);
-            window.addEventListener('mouseup', globalMouseUp, true);
-            return () => {
-                window.removeEventListener('mousemove', globalMouseMove, true);
-                window.removeEventListener('mouseup', globalMouseUp, true);
-            };
-        }
-        return undefined;
-    }, [model, mouseDragging]);
-    // Global tree mouseover effect. Only [model] is needed in the dependency
-    // array because autorun internally tracks all accessed observables
-    // (treeAreaWidth, height, scrollY, etc.) and re-runs when they change
+    const { onMouseDown, onMouseUp } = useWheelScroll({ ref, onScrollY });
     useEffect(() => {
         const ctx = mouseoverRef.current?.getContext('2d');
         return ctx
@@ -76,60 +23,36 @@ const TreeCanvas = observer(function ({ model }) {
                     const { relativeTo, leaves, rowHeight, hoveredTreeNode, treeAreaWidth: w, height: h, scrollY: sy, mouseOverRowName, } = model;
                     ctx.resetTransform();
                     ctx.clearRect(0, 0, w, h);
-                    // Highlight reference row (relativeTo) persistently
                     if (relativeTo) {
                         const referenceLeaf = leaves.find(leaf => leaf.data.name === relativeTo);
                         if (referenceLeaf) {
-                            const y = referenceLeaf.x + sy;
-                            ctx.fillStyle = 'rgba(0,128,255,0.3)'; // Blue highlight for reference row
-                            ctx.fillRect(0, y - rowHeight / 2, w, rowHeight);
+                            ctx.fillStyle = referenceColor;
+                            ctx.fillRect(0, referenceLeaf.x + sy - rowHeight / 2, w, rowHeight);
                         }
                     }
-                    // Highlight multiple rows when hovering over tree nodes
                     if (hoveredTreeNode) {
-                        ctx.fillStyle = 'rgba(255,165,0,0.2)'; // Orange highlight for tree hover
+                        ctx.fillStyle = treeHoverColor;
                         for (const descendantName of hoveredTreeNode.descendantNames) {
                             const matchingLeaf = leaves.find(leaf => leaf.data.name === descendantName);
                             if (matchingLeaf) {
-                                const y = matchingLeaf.x + sy;
-                                ctx.fillRect(0, y - rowHeight / 2, w, rowHeight);
+                                ctx.fillRect(0, matchingLeaf.x + sy - rowHeight / 2, w, rowHeight);
                             }
                         }
                     }
-                    // Highlight single tree row corresponding to MSA mouseover (if not part of multi-row hover)
                     if (mouseOverRowName &&
                         mouseOverRowName !== relativeTo &&
                         !hoveredTreeNode?.descendantNames.includes(mouseOverRowName)) {
                         const matchingLeaf = leaves.find(leaf => leaf.data.name === mouseOverRowName);
                         if (matchingLeaf) {
-                            const y = matchingLeaf.x + sy;
-                            ctx.fillStyle = 'rgba(255,165,0,0.2)'; // Orange highlight for MSA sync
-                            ctx.fillRect(0, y - rowHeight / 2, w, rowHeight);
+                            ctx.fillStyle = treeHoverColor;
+                            ctx.fillRect(0, matchingLeaf.x + sy - rowHeight / 2, w, rowHeight);
                         }
                     }
                 }
             })
             : undefined;
     }, [model]);
-    function mouseDown(event) {
-        // check if clicking a draggable element or a resize handle
-        const target = event.target;
-        if (target.draggable || target.dataset.resizer) {
-            return;
-        }
-        // otherwise do click and drag scroll
-        if (event.button === 0) {
-            prevY.current = event.clientY;
-            setMouseDragging(true);
-        }
-    }
-    return (React.createElement("div", { ref: ref, onMouseDown: mouseDown, onMouseUp: event => {
-            // this local mouseup is used in addition to the global because
-            // sometimes the global add/remove are not called in time, resulting in
-            // issue #533
-            event.preventDefault();
-            setMouseDragging(false);
-        }, onMouseLeave: event => {
+    return (React.createElement("div", { ref: ref, onMouseDown: onMouseDown, onMouseUp: onMouseUp, onMouseLeave: event => {
             event.preventDefault();
         }, style: {
             height,

package/dist/components/tree/TreeCanvas.js.map

@@ -1 +1 @@
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package/dist/components/tree/TreeNodeMenu.js

@@ -4,8 +4,9 @@ import { observer } from 'mobx-react';
 // lazies
 const TreeNodeInfoDialog = lazy(() => import("./dialogs/TreeNodeInfoDialog.js"));
 const TreeMenu = observer(function ({ node, onClose, model, }) {
-    const { collapsed, collapsedLeaves } = model;
-    const { name } = node;
+    const { collapsed } = model;
+    const { name, id } = node;
+    const isCollapsed = collapsed.includes(id);
     return (React.createElement(Menu, { anchorReference: "anchorPosition", anchorPosition: {
             top: node.y,
             left: node.x,
@@ -24,21 +25,9 @@ const TreeMenu = observer(function ({ node, onClose, model, }) {
                 onClose();
             } }, "More info..."),
         React.createElement(MenuItem, { dense: true, onClick: () => {
-                if (collapsed.includes(node.id)) {
-                    model.toggleCollapsed(node.id);
-                }
-                else {
-                    if (node.id.endsWith('-leafnode')) {
-                        model.toggleCollapsedLeaf(node.id);
-                    }
-                    else {
-                        model.toggleCollapsedLeaf(`${node.id}-leafnode`);
-                    }
-                }
+                model.toggleCollapsed(id);
                 onClose();
-            } }, collapsed.includes(node.id) || collapsedLeaves.includes(node.id)
-            ? 'Show node'
-            : 'Hide node'),
+            } }, isCollapsed ? 'Show node' : 'Hide node'),
         React.createElement(MenuItem, { dense: true, onClick: () => {
                 model.drawRelativeTo(node.name);
                 onClose();

package/dist/components/tree/TreeNodeMenu.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TreeNodeMenu.js","sourceRoot":"","sources":["../../../src/components/tree/TreeNodeMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,SAAS;AACT,MAAM,kBAAkB,GAAG,IAAI,CAC7B,GAAG,EAAE,CAAC,MAAM,CAAC,iCAAkC,CAAC,CACjD,CAAA;AAED,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,EAClC,IAAI,EACJ,OAAO,EACP,KAAK,GAUN;IACC,MAAM,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC3B,MAAM,EAAE,IAAI,EAAE,EAAE,EAAE,GAAG,IAAI,CAAA;IACzB,MAAM,WAAW,GAAG,SAAS,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAA;IAC1C,OAAO,CACL,oBAAC,IAAI,IACH,eAAe,EAAC,gBAAgB,EAChC,cAAc,EAAE;YACd,GAAG,EAAE,IAAI,CAAC,CAAC;YACX,IAAI,EAAE,IAAI,CAAC,CAAC;SACb,EACD,kBAAkB,EAAE,CAAC,EACrB,WAAW,QACX,IAAI,EAAE,OAAO,CAAC,IAAI,CAAC,EACnB,OAAO,EAAE,OAAO;QAEhB,oBAAC,QAAQ,IAAC,KAAK,QAAC,QAAQ,UACrB,IAAI,CACI;QAEX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;oBAC3B,kBAAkB;oBAClB;wBACE,IAAI,EAAE,KAAK,CAAC,UAAU,CAAC,IAAI,CAAC;wBAC5B,KAAK;wBACL,QAAQ,EAAE,IAAI;wBACd,OAAO;qBACR;iBACF,CAAC,CAAA;gBACF,OAAO,EAAE,CAAA;YACX,CAAC,mBAGQ;QACX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,eAAe,CAAC,EAAE,CAAC,CAAA;gBACzB,OAAO,EAAE,CAAA;YACX,CAAC,IAEA,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,WAAW,CAC/B;QACX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;gBAC/B,OAAO,EAAE,CAAA;YACX,CAAC,yCAGQ;QACV,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAClB,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,CAAC,SAAS,CAAC,CAAA;gBAC/B,OAAO,EAAE,CAAA;YACX,CAAC,0BAGQ,CACZ,CAAC,CAAC,CAAC,IAAI,CACH,CACR,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}

package/dist/components/tree/renderTreeCanvas.js

@@ -1,3 +1,4 @@
+import { descendants, links } from "../../hierarchy.js";
 export const padding = 600;
 const extendBounds = 5;
 const radius = 2.5;
@@ -6,7 +7,7 @@ export function renderTree({ offsetY, ctx, model, theme, blockSizeYOverride, })
     const { hierarchy, showBranchLenEffective: showBranchLen, blockSize } = model;
     const by = blockSizeYOverride || blockSize;
     ctx.strokeStyle = theme.palette.text.primary;
-    for (const link of hierarchy.links()) {
+    for (const link of links(hierarchy)) {
         const { source, target } = link;
         if (target.height === 0 && !showBranchLen) {
             continue;
@@ -35,7 +36,7 @@ export function renderTree({ offsetY, ctx, model, theme, blockSizeYOverride, })
 export function renderNodeBubbles({ ctx, clickMap, offsetY, model, blockSizeYOverride, }) {
     const { hierarchy, showBranchLenEffective: showBranchLen, collapsed, blockSize, marginLeft: ml, } = model;
     const by = blockSizeYOverride || blockSize;
-    for (const node of hierarchy.descendants()) {
+    for (const node of descendants(hierarchy)) {
         const x = showBranchLen ? node.len : node.y;
         if (x === undefined) {
             continue;
@@ -65,7 +66,7 @@ export function renderNodeBubbles({ ctx, clickMap, offsetY, model, blockSizeYOve
     }
 }
 export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSizeYOverride, }) {
-    const { fontSize, showBranchLenEffective: showBranchLen, treeMetadata, hierarchy, collapsed, collapsedLeaves, blockSize, labelsAlignRight, drawTree, treeAreaWidth, treeWidth, treeAreaWidthMinusMargin, marginLeft, leaves, noTree, } = model;
+    const { fontSize, showBranchLenEffective: showBranchLen, treeMetadata, blockSize, labelsAlignRight, drawTree, treeAreaWidth, treeAreaWidthMinusMargin, marginLeft, leaves, noTree, } = model;
     const by = blockSizeYOverride || blockSize;
     const emHeight = ctx.measureText('M').width;
     if (labelsAlignRight) {
@@ -87,15 +88,6 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSi
             let xp = 0;
             if (!noTree) {
                 xp = (showBranchLen ? len : x) || 0;
-                if (!showBranchLen &&
-                    !collapsed.includes(id) &&
-                    !collapsedLeaves.includes(id)) {
-                    // this subtraction is a hack to compensate for the leafnode rendering
-                    // glitch (issue #71). the context is that an extra leaf node is added
-                    // so that 'collapsing/hiding leaf nodes is possible' but this causes
-                    // weird workarounds
-                    xp -= treeWidth / hierarchy.height;
-                }
             }
             const { width } = ctx.measureText(displayName);
             ctx.fillStyle = theme.palette.text.primary;

package/dist/components/tree/renderTreeCanvas.js.map

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package/dist/constants.d.ts

@@ -7,7 +7,6 @@ export declare const defaultCurrentAlignment = 0;
 export declare const defaultShowDomains = false;
 export declare const defaultHideGaps = true;
 export declare const defaultAllowedGappyness = 100;
-export declare const defaultContrastLettering = true;
 export declare const defaultSubFeatureRows = false;
 export declare const defaultDrawMsaLetters = true;
 export declare const defaultBgColor = true;
@@ -16,7 +15,6 @@ export declare const defaultDrawLabels = true;
 export declare const defaultLabelsAlignRight = false;
 export declare const defaultTreeAreaWidth = 400;
 export declare const defaultTreeWidth = 300;
-export declare const defaultTreeWidthMatchesArea = true;
 export declare const defaultShowBranchLen = true;
 export declare const defaultDrawTree = true;
 export declare const defaultDrawNodeBubbles = true;

package/dist/constants.js

@@ -8,7 +8,6 @@ export const defaultCurrentAlignment = 0;
 export const defaultShowDomains = false;
 export const defaultHideGaps = true;
 export const defaultAllowedGappyness = 100;
-export const defaultContrastLettering = true;
 export const defaultSubFeatureRows = false;
 export const defaultDrawMsaLetters = true;
 // MSA model defaults
@@ -19,7 +18,6 @@ export const defaultDrawLabels = true;
 export const defaultLabelsAlignRight = false;
 export const defaultTreeAreaWidth = 400;
 export const defaultTreeWidth = 300;
-export const defaultTreeWidthMatchesArea = true;
 export const defaultShowBranchLen = true;
 export const defaultDrawTree = true;
 export const defaultDrawNodeBubbles = true;

package/dist/constants.js.map

@@ -1 +1 @@
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package/dist/fetchUtils.d.ts

@@ -1,5 +1,4 @@
 export declare function myfetch(url: string, args?: RequestInit): Promise<Response>;
 export declare function textfetch(url: string, args?: RequestInit): Promise<string>;
 export declare function jsonfetch<T>(url: string, args?: RequestInit): Promise<T>;
-export declare function arraybufferfetch(url: string): Promise<ArrayBuffer>;
 export declare function timeout(time: number): Promise<unknown>;