react-msaview 4.8.1 → 5.0.3

package/dist/components/tree/TreeCanvasBlock.js.map

@@ -1 +1 @@
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package/dist/components/tree/TreeNodeMenu.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import type { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model.ts';
 declare const TreeMenu: ({ node, onClose, model, }: {
     node: {
         x: number;

package/dist/components/tree/TreeNodeMenu.js

@@ -2,7 +2,7 @@ import React, { lazy } from 'react';
 import { Menu, MenuItem } from '@mui/material';
 import { observer } from 'mobx-react';
 // lazies
-const TreeNodeInfoDialog = lazy(() => import('./dialogs/TreeNodeInfoDialog'));
+const TreeNodeInfoDialog = lazy(() => import("./dialogs/TreeNodeInfoDialog.js"));
 const TreeMenu = observer(function ({ node, onClose, model, }) {
     const { collapsed, collapsedLeaves } = model;
     const { name } = node;

package/dist/components/tree/TreeNodeMenu.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TreeNodeMenu.js","sourceRoot":"","sources":["../../../src/components/tree/TreeNodeMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,SAAS;AACT,MAAM,kBAAkB,GAAG,IAAI,CAC7B,GAAG,EAAE,CAAC,MAAM,CAAC,iCAAkC,CAAC,CACjD,CAAA;AAED,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,EAClC,IAAI,EACJ,OAAO,EACP,KAAK,GAUN;IACC,MAAM,EAAE,SAAS,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;IAC5C,MAAM,EAAE,IAAI,EAAE,GAAG,IAAI,CAAA;IACrB,OAAO,CACL,oBAAC,IAAI,IACH,eAAe,EAAC,gBAAgB,EAChC,cAAc,EAAE;YACd,GAAG,EAAE,IAAI,CAAC,CAAC;YACX,IAAI,EAAE,IAAI,CAAC,CAAC;SACb,EACD,kBAAkB,EAAE,CAAC,EACrB,WAAW,QACX,IAAI,EAAE,OAAO,CAAC,IAAI,CAAC,EACnB,OAAO,EAAE,OAAO;QAEhB,oBAAC,QAAQ,IAAC,KAAK,QAAC,QAAQ,UACrB,IAAI,CACI;QAEX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;oBAC3B,kBAAkB;oBAClB;wBACE,IAAI,EAAE,KAAK,CAAC,UAAU,CAAC,IAAI,CAAC;wBAC5B,KAAK;wBACL,QAAQ,EAAE,IAAI;wBACd,OAAO;qBACR;iBACF,CAAC,CAAA;gBACF,OAAO,EAAE,CAAA;YACX,CAAC,mBAGQ;QACX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC;oBAChC,KAAK,CAAC,eAAe,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;gBAChC,CAAC;qBAAM,CAAC;oBACN,IAAI,IAAI,CAAC,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,CAAC;wBAClC,KAAK,CAAC,mBAAmB,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;oBACpC,CAAC;yBAAM,CAAC;wBACN,KAAK,CAAC,mBAAmB,CAAC,GAAG,IAAI,CAAC,EAAE,WAAW,CAAC,CAAA;oBAClD,CAAC;gBACH,CAAC;gBACD,OAAO,EAAE,CAAA;YACX,CAAC,IAEA,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,eAAe,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC;YAC/D,CAAC,CAAC,WAAW;YACb,CAAC,CAAC,WAAW,CACN;QACX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;gBAC/B,OAAO,EAAE,CAAA;YACX,CAAC,yCAGQ;QACV,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAClB,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,CAAC,SAAS,CAAC,CAAA;gBAC/B,OAAO,EAAE,CAAA;YACX,CAAC,0BAGQ,CACZ,CAAC,CAAC,CAAC,IAAI,CACH,CACR,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}

package/dist/components/tree/TreePanel.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import type { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model.ts';
 declare const TreePanel: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/tree/TreePanel.js

@@ -1,6 +1,6 @@
 import React from 'react';
 import { observer } from 'mobx-react';
-import TreeCanvas from './TreeCanvas';
+import TreeCanvas from "./TreeCanvas.js";
 const TreePanel = observer(function ({ model }) {
     const { treeAreaWidth } = model;
     return (React.createElement("div", { style: { overflow: 'hidden', flexShrink: 0, width: treeAreaWidth } },

package/dist/components/tree/TreePanel.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TreePanel.js","sourceRoot":"","sources":["../../../src/components/tree/TreePanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,UAAU,MAAM,iBAAkB,CAAA;AAIzC,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC/B,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,QAAQ,EAAE,UAAU,EAAE,CAAC,EAAE,KAAK,EAAE,aAAa,EAAE;QACrE,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CACxB,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}

package/dist/components/tree/TreeRuler.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import type { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model.ts';
 declare const TreeRuler: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/tree/dialogs/TreeNodeInfoDialog.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import type { MsaViewModel } from '../../../model';
+import type { MsaViewModel } from '../../../model.ts';
 declare const TreeNodeInfoDialog: ({ info, model, nodeName, onClose, }: {
     info: Record<string, unknown>;
     model: MsaViewModel;

package/dist/components/tree/dialogs/TreeNodeInfoDialog.js

@@ -4,7 +4,7 @@ import BaseCard from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard
 import { Dialog } from '@jbrowse/core/ui';
 import { DialogContent } from '@mui/material';
 import { observer } from 'mobx-react';
-import SequenceTextArea from '../../SequenceTextArea';
+import SequenceTextArea from "../../SequenceTextArea.js";
 const TreeNodeInfoDialog = observer(function ({ info, model, nodeName, onClose, }) {
     const { treeMetadata, rows } = model;
     const metadata = treeMetadata[nodeName];

package/dist/components/tree/dialogs/TreeNodeInfoDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TreeNodeInfoDialog.js","sourceRoot":"","sources":["../../../../src/components/tree/dialogs/TreeNodeInfoDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,UAAU,MAAM,8DAA8D,CAAA;AACrF,OAAO,QAAQ,MAAM,4DAA4D,CAAA;AACjF,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,gBAAgB,MAAM,2BAA4B,CAAA;AAIzD,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,IAAI,EACJ,KAAK,EACL,QAAQ,EACR,OAAO,GAMR;IACC,MAAM,EAAE,YAAY,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IACpC,MAAM,QAAQ,GAAG,YAAY,CAAC,QAAQ,CAAC,CAAA;IACvC,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,QAAQ,CAAC,CAAA;IAC7C,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC,EACD,IAAI,QACJ,KAAK,EAAC,gBAAgB,EACtB,QAAQ,EAAC,IAAI;QAEb,oBAAC,aAAa;YACZ,oBAAC,QAAQ,IAAC,KAAK,EAAC,YAAY;gBAC1B,oBAAC,UAAU,IAAC,UAAU,EAAE,EAAE,QAAQ,EAAE,GAAG,IAAI,EAAE,GAAI,CACxC;YACX,oBAAC,QAAQ,IAAC,KAAK,EAAC,UAAU,IACvB,GAAG,CAAC,CAAC,CAAC,CACL,oBAAC,gBAAgB,IAAC,GAAG,EAAE,CAAC,GAAG,CAAC,GAAI,CACjC,CAAC,CAAC,CAAC,CACF,sDAA6B,CAC9B,CACQ;YACV,QAAQ,CAAC,CAAC,CAAC,CACV,oBAAC,QAAQ,IAAC,KAAK,EAAC,gBAAgB;gBAC9B,oBAAC,UAAU,IAAC,UAAU,EAAE,QAAQ,GAAI,CAC3B,CACZ,CAAC,CAAC,CAAC,IAAI,CACM,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}

package/dist/components/tree/renderTreeCanvas.d.ts

@@ -1,4 +1,4 @@
-import type { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model.ts';
 import type { Theme } from '@mui/material';
 export declare const padding = 600;
 interface ClickEntry {

package/dist/createPaletteMap.d.ts

@@ -0,0 +1,7 @@
+/**
+ * Creates a map from keys to colors using ggplot-style palettes.
+ * The palette is selected based on the number of keys.
+ */
+export declare function createPaletteMap(keys: string[]): {
+    [k: string]: string;
+};

package/dist/createPaletteMap.js

@@ -0,0 +1,11 @@
+import palettes from "./ggplotPalettes.js";
+/**
+ * Creates a map from keys to colors using ggplot-style palettes.
+ * The palette is selected based on the number of keys.
+ */
+export function createPaletteMap(keys) {
+    const k = Math.min(keys.length - 1, palettes.length - 1);
+    const palette = palettes[k];
+    return Object.fromEntries(keys.map((key, i) => [key, palette[i]]));
+}
+//# sourceMappingURL=createPaletteMap.js.map

package/dist/createPaletteMap.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"createPaletteMap.js","sourceRoot":"","sources":["../src/createPaletteMap.ts"],"names":[],"mappings":"AAAA,OAAO,QAAQ,MAAM,qBAAqB,CAAA;AAE1C;;;GAGG;AACH,MAAM,UAAU,gBAAgB,CAAC,IAAc;IAC7C,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IACxD,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAA;IAC5B,OAAO,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,EAAE,OAAO,CAAC,CAAC,CAAE,CAAC,CAAC,CAAC,CAAA;AACrE,CAAC"}

package/dist/createPaletteMap.test.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/createPaletteMap.test.js

@@ -0,0 +1,49 @@
+import { expect, test } from 'vitest';
+import { createPaletteMap } from "./createPaletteMap.js";
+import palettes from "./ggplotPalettes.js";
+// Original implementation for comparison
+function originalFillPalette(keys) {
+    let i = 0;
+    const map = {};
+    for (const key of keys) {
+        const k = Math.min(keys.length - 1, palettes.length - 1);
+        map[key] = palettes[k][i];
+        i++;
+    }
+    return map;
+}
+test('createPaletteMap matches original implementation with 1 key', () => {
+    const keys = ['IPR001234'];
+    expect(createPaletteMap(keys)).toEqual(originalFillPalette(keys));
+});
+test('createPaletteMap matches original implementation with 3 keys', () => {
+    const keys = ['IPR001234', 'IPR005678', 'IPR009012'];
+    expect(createPaletteMap(keys)).toEqual(originalFillPalette(keys));
+});
+test('createPaletteMap matches original implementation with 8 keys (max palette size)', () => {
+    const keys = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H'];
+    expect(createPaletteMap(keys)).toEqual(originalFillPalette(keys));
+});
+test('createPaletteMap matches original implementation with more keys than palette colors', () => {
+    const keys = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J'];
+    expect(createPaletteMap(keys)).toEqual(originalFillPalette(keys));
+});
+test('createPaletteMap returns correct colors for 3 keys', () => {
+    const keys = ['X', 'Y', 'Z'];
+    const result = createPaletteMap(keys);
+    // With 3 keys, uses palette index 2 (0-indexed)
+    expect(result).toEqual({
+        X: '#F8766D',
+        Y: '#00BA38',
+        Z: '#619CFF',
+    });
+});
+test('createPaletteMap returns empty object for empty keys', () => {
+    expect(createPaletteMap([])).toEqual({});
+});
+test('createPaletteMap preserves key order', () => {
+    const keys = ['Z', 'A', 'M'];
+    const result = createPaletteMap(keys);
+    expect(Object.keys(result)).toEqual(['Z', 'A', 'M']);
+});
+//# sourceMappingURL=createPaletteMap.test.js.map

package/dist/createPaletteMap.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"createPaletteMap.test.js","sourceRoot":"","sources":["../src/createPaletteMap.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAErC,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAA;AACxD,OAAO,QAAQ,MAAM,qBAAqB,CAAA;AAE1C,yCAAyC;AACzC,SAAS,mBAAmB,CAAC,IAAc;IACzC,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,MAAM,GAAG,GAAG,EAA4B,CAAA;IACxC,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;QACxD,GAAG,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAC,CAAC,CAAE,CAAA;QAC3B,CAAC,EAAE,CAAA;IACL,CAAC;IACD,OAAO,GAAG,CAAA;AACZ,CAAC;AAED,IAAI,CAAC,6DAA6D,EAAE,GAAG,EAAE;IACvE,MAAM,IAAI,GAAG,CAAC,WAAW,CAAC,CAAA;IAC1B,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAA;AACnE,CAAC,CAAC,CAAA;AAEF,IAAI,CAAC,8DAA8D,EAAE,GAAG,EAAE;IACxE,MAAM,IAAI,GAAG,CAAC,WAAW,EAAE,WAAW,EAAE,WAAW,CAAC,CAAA;IACpD,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAA;AACnE,CAAC,CAAC,CAAA;AAEF,IAAI,CAAC,iFAAiF,EAAE,GAAG,EAAE;IAC3F,MAAM,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;IACrD,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAA;AACnE,CAAC,CAAC,CAAA;AAEF,IAAI,CAAC,qFAAqF,EAAE,GAAG,EAAE;IAC/F,MAAM,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;IAC/D,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAA;AACnE,CAAC,CAAC,CAAA;AAEF,IAAI,CAAC,oDAAoD,EAAE,GAAG,EAAE;IAC9D,MAAM,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;IAC5B,MAAM,MAAM,GAAG,gBAAgB,CAAC,IAAI,CAAC,CAAA;IACrC,gDAAgD;IAChD,MAAM,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC;QACrB,CAAC,EAAE,SAAS;QACZ,CAAC,EAAE,SAAS;QACZ,CAAC,EAAE,SAAS;KACb,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA;AAEF,IAAI,CAAC,sDAAsD,EAAE,GAAG,EAAE;IAChE,MAAM,CAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;AAC1C,CAAC,CAAC,CAAA;AAEF,IAAI,CAAC,sCAAsC,EAAE,GAAG,EAAE;IAChD,MAAM,IAAI,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;IAC5B,MAAM,MAAM,GAAG,gBAAgB,CAAC,IAAI,CAAC,CAAA;IACrC,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;AACtD,CAAC,CAAC,CAAA"}

package/dist/index.d.ts

@@ -1,2 +1,3 @@
-export { default as MSAView } from './components/Loading';
-export { type MsaViewModel, default as MSAModelF } from './model';
+export { default as MSAView } from './components/Loading.tsx';
+export { type MsaViewModel, default as MSAModelF } from './model.ts';
+export type { MSAParserType } from 'msa-parsers';

package/dist/index.js

@@ -1,3 +1,3 @@
-export { default as MSAView } from './components/Loading';
-export { default as MSAModelF } from './model';
+export { default as MSAView } from "./components/Loading.js";
+export { default as MSAModelF } from "./model.js";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,OAAO,EAAE,MAAM,sBAAsB,CAAA;AACzD,OAAO,EAAqB,OAAO,IAAI,SAAS,EAAE,MAAM,SAAS,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,IAAI,OAAO,EAAE,MAAM,yBAA0B,CAAA;AAC7D,OAAO,EAAqB,OAAO,IAAI,SAAS,EAAE,MAAM,YAAY,CAAA"}

package/dist/launchInterProScan.d.ts

@@ -1,4 +1,4 @@
-import type { MsaViewModel } from './model';
+import type { MsaViewModel } from './model.ts';
 export interface InterProScanResults {
     matches: {
         signature: {

package/dist/launchInterProScan.js

@@ -1,5 +1,5 @@
 import { getSession } from '@jbrowse/core/util';
-import { jsonfetch, textfetch, timeout } from './fetchUtils';
+import { jsonfetch, textfetch, timeout } from "./fetchUtils.js";
 const base = 'https://www.ebi.ac.uk/Tools/services/rest';
 async function runInterProScan({ seq, onProgress, onJobId, programs, model, }) {
     const jobId = await textfetch(`${base}/iprscan5/run`, {

package/dist/launchInterProScan.js.map

@@ -1 +1 @@
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+{"version":3,"file":"launchInterProScan.js","sourceRoot":"","sources":["../src/launchInterProScan.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAE/C,OAAO,EAAE,SAAS,EAAE,SAAS,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAI/D,MAAM,IAAI,GAAG,2CAA2C,CAAA;AAmBxD,KAAK,UAAU,eAAe,CAAC,EAC7B,GAAG,EACH,UAAU,EACV,OAAO,EACP,QAAQ,EACR,KAAK,GAON;IACC,MAAM,KAAK,GAAG,MAAM,SAAS,CAAC,GAAG,IAAI,eAAe,EAAE;QACpD,MAAM,EAAE,MAAM;QACd,IAAI,EAAE,IAAI,eAAe,CAAC;YACxB,KAAK,EAAE,uBAAuB;YAC9B,QAAQ,EAAE,GAAG;YACb,QAAQ,EAAE,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC;SAC7B,CAAC;KACH,CAAC,CAAA;IACF,OAAO,EAAE,CAAC,KAAK,CAAC,CAAA;IAChB,MAAM,IAAI,CAAC;QACT,KAAK;QACL,UAAU;KACX,CAAC,CAAA;IACF,MAAM,iCAAiC,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,CAAA;AAC3D,CAAC;AAED,MAAM,UAAU,uBAAuB,CAAC,KAAa;IACnD,OAAO,SAAS,CACd,GAAG,IAAI,oBAAoB,KAAK,OAAO,CACxC,CAAA;AACH,CAAC;AAED,KAAK,UAAU,IAAI,CAAC,EAClB,UAAU,EACV,KAAK,GAIN;IACC,MAAM,GAAG,GAAG,GAAG,IAAI,oBAAoB,KAAK,EAAE,CAAA;IAC9C,IAAI,CAAC;QACH,uEAAuE;QACvE,OAAO,IAAI,EAAE,CAAC;YACZ,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC5B,MAAM,OAAO,CAAC,IAAI,CAAC,CAAA;gBACnB,UAAU,CAAC,EAAE,GAAG,EAAE,mBAAmB,EAAE,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,CAAA;YACvD,CAAC;YACD,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,GAAG,CAAC,CAAA;YACnC,IAAI,MAAM,CAAC,QAAQ,CAAC,UAAU,CAAC,EAAE,CAAC;gBAChC,MAAK;YACP,CAAC;YACD,IAAI,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;gBAC/B,MAAM,IAAI,KAAK,CAAC,wBAAwB,KAAK,EAAE,CAAC,CAAA;YAClD,CAAC;QACH,CAAC;IACH,CAAC;YAAS,CAAC;QACT,UAAU,EAAE,CAAA;IACd,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CAAC,EACvC,SAAS,EACT,GAAG,EACH,QAAQ,EACR,OAAO,EACP,UAAU,EACV,KAAK,GAQN;IACC,IAAI,CAAC;QACH,UAAU,CAAC,EAAE,GAAG,EAAE,aAAa,SAAS,MAAM,EAAE,CAAC,CAAA;QACjD,IAAI,SAAS,KAAK,cAAc,EAAE,CAAC;YACjC,MAAM,eAAe,CAAC;gBACpB,GAAG;gBACH,OAAO;gBACP,UAAU;gBACV,QAAQ;gBACR,KAAK;aACN,CAAC,CAAA;QACJ,CAAC;QACD,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAA;IACtC,CAAC;YAAS,CAAC;QACT,UAAU,EAAE,CAAA;IACd,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,iCAAiC,CAAC,EACtD,KAAK,EACL,KAAK,GAIN;IACC,IAAI,CAAC;QACH,KAAK,CAAC,SAAS,CAAC;YACd,GAAG,EAAE,0BAA0B,KAAK,iGAAiG;YACrI,GAAG,EAAE,6DAA6D,KAAK,OAAO;SAC/E,CAAC,CAAA;QACF,MAAM,GAAG,GAAG,MAAM,uBAAuB,CAAC,KAAK,CAAC,CAAA;QAChD,KAAK,CAAC,sBAAsB,CAC1B,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAC7D,CAAA;QACD,KAAK,CAAC,cAAc,CAAC,IAAI,CAAC,CAAA;QAC1B,UAAU,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,uBAAuB,KAAK,UAAU,EAAE,SAAS,CAAC,CAAA;IAC7E,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QAChB,UAAU,CAAC,KAAK,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,CAAA;IAC1C,CAAC;YAAS,CAAC;QACT,KAAK,CAAC,SAAS,EAAE,CAAA;IACnB,CAAC;AACH,CAAC"}

package/dist/model/DataModel.d.ts

@@ -5,19 +5,19 @@
  * data will not be persisted in saved session snapshots, it will be fetched
  * from msaFilehandle at startup
  */
-export declare function DataModelF(): import("mobx-state-tree").IModelType<{
+export declare function DataModelF(): import("@jbrowse/mobx-state-tree").IModelType<{
     /**
      * #property
      */
-    tree: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    tree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
     /**
      * #property
      */
-    msa: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    msa: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
     /**
      * #property
      */
-    treeMetadata: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    treeMetadata: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
 }, {
     /**
      * #action
@@ -31,7 +31,7 @@ export declare function DataModelF(): import("mobx-state-tree").IModelType<{
      * #action
      */
     setTreeMetadata(treeMetadata?: string): void;
-}, import("mobx-state-tree")._NotCustomized, {
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, {
     tree: string | undefined;
     msa: string | undefined;
     treeMetadata: string | undefined;

package/dist/model/DataModel.js

@@ -1,4 +1,4 @@
-import { types } from 'mobx-state-tree';
+import { types } from '@jbrowse/mobx-state-tree';
 /**
  * #stateModel DataModel
  * the data stored for the model. this is sometimes temporary in the case that

package/dist/model/DataModel.js.map

@@ -1 +1 @@
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+{"version":3,"file":"DataModel.js","sourceRoot":"","sources":["../../src/model/DataModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhD;;;;;;GAMG;AACH,MAAM,UAAU,UAAU;IACxB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC/B;;WAEG;QACH,GAAG,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC9B;;WAEG;QACH,YAAY,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;KACxC,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD;;WAEG;QACH,MAAM,CAAC,GAAY;YACjB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAA;QAChB,CAAC;QACD;;WAEG;QACH,eAAe,CAAC,YAAqB;YACnC,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;QAClC,CAAC;KACF,CAAC,CAAC;SACF,mBAAmB,CAAC,IAAI,CAAC,EAAE;QAC1B,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,YAAY,EAAE,GAAG,IAAI,CAAA;QACxC,MAAM,GAAG,GAAG,MAAM,CAAA;QAClB,OAAO;YACL,IAAI,EAAE,IAAI,IAAI,IAAI,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI;YAClD,GAAG,EAAE,GAAG,IAAI,GAAG,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG;YAC9C,YAAY,EACV,YAAY,IAAI,YAAY,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,YAAY;SACvE,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC"}

package/dist/model/DialogQueue.d.ts

@@ -2,7 +2,7 @@ import type { DialogComponentType } from '@jbrowse/core/util';
 /**
  * #stateModel DialogQueueSessionMixin
  */
-export declare function DialogQueueSessionMixin(): import("mobx-state-tree").IModelType<{}, {
+export declare function DialogQueueSessionMixin(): import("@jbrowse/mobx-state-tree").IModelType<{}, {
     queueOfDialogs: [DialogComponentType, any][];
 } & {
     /**
@@ -22,4 +22,4 @@ export declare function DialogQueueSessionMixin(): import("mobx-state-tree").IMo
      * #action
      */
     queueDialog(cb: (doneCallback: () => void) => [DialogComponentType, unknown]): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;

package/dist/model/DialogQueue.js

@@ -1,4 +1,4 @@
-import { types } from 'mobx-state-tree';
+import { types } from '@jbrowse/mobx-state-tree';
 /**
  * #stateModel DialogQueueSessionMixin
  */

package/dist/model/DialogQueue.js.map

@@ -1 +1 @@
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+{"version":3,"file":"DialogQueue.js","sourceRoot":"","sources":["../../src/model/DialogQueue.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAIhD;;GAEG;AACH,MAAM,UAAU,uBAAuB;IACrC,OAAO,KAAK;SACT,KAAK,CAAC,yBAAyB,EAAE,EAAE,CAAC;SACpC,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,cAAc,EAAE,EAAkC;KACnD,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,eAAe;YACjB,OAAO,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;QACpC,CAAC;QACD;;WAEG;QACH,IAAI,WAAW;YACb,OAAO,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;QACpC,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,kBAAkB;YAChB,IAAI,CAAC,cAAc,GAAG,IAAI,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QACpD,CAAC;QACD;;WAEG;QACH,WAAW,CACT,EAAgE;YAEhE,MAAM,CAAC,SAAS,EAAE,KAAK,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE;gBACjC,IAAI,CAAC,kBAAkB,EAAE,CAAA;YAC3B,CAAC,CAAC,CAAA;YACF,IAAI,CAAC,cAAc,GAAG,CAAC,GAAG,IAAI,CAAC,cAAc,EAAE,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC,CAAA;QACpE,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}

package/dist/model/msaModel.d.ts

@@ -1,6 +1,6 @@
-export declare function MSAModelF(): import("mobx-state-tree").IModelType<{
-    bgColor: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    colorSchemeName: import("mobx-state-tree").IType<string | undefined, string, string>;
+export declare function MSAModelF(): import("@jbrowse/mobx-state-tree").IModelType<{
+    bgColor: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    colorSchemeName: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
 }, {
     /**
      * #action
@@ -11,4 +11,4 @@ export declare function MSAModelF(): import("mobx-state-tree").IModelType<{
      * #action
      */
     setBgColor(arg: boolean): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;

package/dist/model/msaModel.js

@@ -1,5 +1,5 @@
-import { types } from 'mobx-state-tree';
-import { defaultBgColor, defaultColorSchemeName } from '../constants';
+import { types } from '@jbrowse/mobx-state-tree';
+import { defaultBgColor, defaultColorSchemeName } from "../constants.js";
 /**
  * #stateModel MSAModel
  */

package/dist/model/msaModel.js.map

@@ -1 +1 @@
-{"version":3,"file":"msaModel.js","sourceRoot":"","sources":["../../src/model/msaModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,OAAO,EAAE,cAAc,EAAE,sBAAsB,EAAE,MAAM,cAAc,CAAA;AAErE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,UAAU,SAAS;IACvB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;;WAGG;QACH,OAAO,EAAE,cAAc;QAEvB;;;WAGG;QACH,eAAe,EAAE,sBAAsB;KACxC,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;;WAGG;QACH,kBAAkB,CAAC,IAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,IAAI,CAAA;QAC7B,CAAC;QAED;;WAEG;QACH,UAAU,CAAC,GAAY;YACrB,IAAI,CAAC,OAAO,GAAG,GAAG,CAAA;QACpB,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
+{"version":3,"file":"msaModel.js","sourceRoot":"","sources":["../../src/model/msaModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhD,OAAO,EAAE,cAAc,EAAE,sBAAsB,EAAE,MAAM,iBAAiB,CAAA;AAExE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,UAAU,SAAS;IACvB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;;WAGG;QACH,OAAO,EAAE,cAAc;QAEvB;;;WAGG;QACH,eAAe,EAAE,sBAAsB;KACxC,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;;WAGG;QACH,kBAAkB,CAAC,IAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,IAAI,CAAA;QAC7B,CAAC;QAED;;WAEG;QACH,UAAU,CAAC,GAAY;YACrB,IAAI,CAAC,OAAO,GAAG,GAAG,CAAA;QACpB,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}

package/dist/model/treeModel.d.ts

@@ -1,12 +1,12 @@
-export declare function TreeModelF(): import("mobx-state-tree").IModelType<{
-    drawLabels: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    labelsAlignRight: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    treeAreaWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-    treeWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-    treeWidthMatchesArea: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    showBranchLen: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    drawTree: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    drawNodeBubbles: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+export declare function TreeModelF(): import("@jbrowse/mobx-state-tree").IModelType<{
+    drawLabels: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    labelsAlignRight: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+    treeWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
+    treeWidthMatchesArea: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    showBranchLen: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    drawTree: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    drawNodeBubbles: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
 }, {
     /**
      * #action
@@ -43,4 +43,4 @@ export declare function TreeModelF(): import("mobx-state-tree").IModelType<{
      * #action
      */
     setDrawLabels(arg: boolean): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;

package/dist/model/treeModel.js

@@ -1,5 +1,5 @@
-import { types } from 'mobx-state-tree';
-import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawTree, defaultLabelsAlignRight, defaultShowBranchLen, defaultTreeAreaWidth, defaultTreeWidth, defaultTreeWidthMatchesArea, } from '../constants';
+import { types } from '@jbrowse/mobx-state-tree';
+import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawTree, defaultLabelsAlignRight, defaultShowBranchLen, defaultTreeAreaWidth, defaultTreeWidth, defaultTreeWidthMatchesArea, } from "../constants.js";
 /**
  * #stateModel Tree
  */

package/dist/model/treeModel.js.map

@@ -1 +1 @@
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