react-msaview 4.8.1 → 5.0.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (240) hide show
  1. package/README.md +9 -2
  2. package/bundle/index.js +87 -187
  3. package/bundle/index.js.LICENSE.txt +0 -83
  4. package/bundle/index.js.map +1 -1
  5. package/dist/colorSchemes.js +1 -1
  6. package/dist/colorSchemes.js.map +1 -1
  7. package/dist/components/ConservationTrack.d.ts +2 -2
  8. package/dist/components/ConservationTrack.js +1 -2
  9. package/dist/components/ConservationTrack.js.map +1 -1
  10. package/dist/components/Loading.d.ts +1 -1
  11. package/dist/components/Loading.js +2 -2
  12. package/dist/components/Loading.js.map +1 -1
  13. package/dist/components/MSAView.d.ts +1 -1
  14. package/dist/components/MSAView.js +8 -8
  15. package/dist/components/MSAView.js.map +1 -1
  16. package/dist/components/ResizeHandles.d.ts +1 -1
  17. package/dist/components/SequenceTextArea.js +2 -2
  18. package/dist/components/SequenceTextArea.js.map +1 -1
  19. package/dist/components/TextTrack.d.ts +2 -2
  20. package/dist/components/TextTrack.js +1 -1
  21. package/dist/components/TextTrack.js.map +1 -1
  22. package/dist/components/Track.d.ts +1 -1
  23. package/dist/components/Track.js +1 -1
  24. package/dist/components/Track.js.map +1 -1
  25. package/dist/components/VerticalScrollbar.d.ts +1 -1
  26. package/dist/components/dialogs/AboutDialog.js +1 -1
  27. package/dist/components/dialogs/AboutDialog.js.map +1 -1
  28. package/dist/components/dialogs/AddTrackDialog.d.ts +1 -1
  29. package/dist/components/dialogs/DomainDialog.d.ts +1 -1
  30. package/dist/components/dialogs/DomainDialog.js +3 -3
  31. package/dist/components/dialogs/DomainDialog.js.map +1 -1
  32. package/dist/components/dialogs/ExportSVGDialog.d.ts +1 -1
  33. package/dist/components/dialogs/ExportSVGDialog.js +1 -1
  34. package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
  35. package/dist/components/dialogs/FeatureDialog.d.ts +1 -1
  36. package/dist/components/dialogs/FeatureDialog.js +1 -1
  37. package/dist/components/dialogs/FeatureDialog.js.map +1 -1
  38. package/dist/components/dialogs/InterProScanDialog.d.ts +1 -1
  39. package/dist/components/dialogs/InterProScanDialog.js +1 -1
  40. package/dist/components/dialogs/InterProScanDialog.js.map +1 -1
  41. package/dist/components/dialogs/MetadataDialog.d.ts +1 -1
  42. package/dist/components/dialogs/MetadataDialog.js +1 -1
  43. package/dist/components/dialogs/MetadataDialog.js.map +1 -1
  44. package/dist/components/dialogs/SettingsDialog.d.ts +1 -1
  45. package/dist/components/dialogs/SettingsDialog.js +2 -2
  46. package/dist/components/dialogs/SettingsDialog.js.map +1 -1
  47. package/dist/components/dialogs/TrackInfoDialog.js +1 -1
  48. package/dist/components/dialogs/TrackInfoDialog.js.map +1 -1
  49. package/dist/components/dialogs/UserProvidedDomainsDialog.d.ts +1 -1
  50. package/dist/components/dialogs/UserProvidedDomainsDialog.js +1 -1
  51. package/dist/components/dialogs/UserProvidedDomainsDialog.js.map +1 -1
  52. package/dist/components/header/GappynessSlider.d.ts +1 -1
  53. package/dist/components/header/Header.d.ts +1 -1
  54. package/dist/components/header/Header.js +10 -10
  55. package/dist/components/header/Header.js.map +1 -1
  56. package/dist/components/header/HeaderInfoArea.d.ts +1 -1
  57. package/dist/components/header/HeaderMenu.d.ts +1 -1
  58. package/dist/components/header/HeaderMenu.js +6 -6
  59. package/dist/components/header/HeaderMenu.js.map +1 -1
  60. package/dist/components/header/HeaderStatusArea.d.ts +1 -1
  61. package/dist/components/header/MultiAlignmentSelector.d.ts +1 -1
  62. package/dist/components/header/SettingsMenu.d.ts +1 -1
  63. package/dist/components/header/SettingsMenu.js +1 -1
  64. package/dist/components/header/SettingsMenu.js.map +1 -1
  65. package/dist/components/header/ZoomControls.d.ts +1 -1
  66. package/dist/components/header/ZoomMenu.d.ts +1 -1
  67. package/dist/components/header/ZoomStar.d.ts +1 -1
  68. package/dist/components/import/ImportForm.d.ts +1 -1
  69. package/dist/components/import/ImportForm.js +2 -2
  70. package/dist/components/import/ImportForm.js.map +1 -1
  71. package/dist/components/import/ImportFormExamples.d.ts +1 -1
  72. package/dist/components/import/ImportFormExamples.js +2 -2
  73. package/dist/components/import/ImportFormExamples.js.map +1 -1
  74. package/dist/components/import/util.d.ts +1 -1
  75. package/dist/components/minimap/Minimap.d.ts +1 -1
  76. package/dist/components/minimap/MinimapSVG.d.ts +1 -1
  77. package/dist/components/msa/MSACanvas.d.ts +1 -1
  78. package/dist/components/msa/MSACanvas.js +2 -2
  79. package/dist/components/msa/MSACanvas.js.map +1 -1
  80. package/dist/components/msa/MSACanvasBlock.d.ts +1 -1
  81. package/dist/components/msa/MSACanvasBlock.js +3 -3
  82. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  83. package/dist/components/msa/MSAMouseoverCanvas.d.ts +1 -1
  84. package/dist/components/msa/MSAMouseoverCanvas.js +2 -2
  85. package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
  86. package/dist/components/msa/MSAPanel.d.ts +1 -1
  87. package/dist/components/msa/MSAPanel.js +2 -2
  88. package/dist/components/msa/MSAPanel.js.map +1 -1
  89. package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts +1 -1
  90. package/dist/components/msa/renderMSABlock.d.ts +1 -1
  91. package/dist/components/msa/renderMSAMouseover.d.ts +1 -1
  92. package/dist/components/tracks/renderTracksSvg.d.ts +2 -2
  93. package/dist/components/tree/TreeBranchMenu.d.ts +1 -1
  94. package/dist/components/tree/TreeCanvas.d.ts +1 -1
  95. package/dist/components/tree/TreeCanvas.js +3 -3
  96. package/dist/components/tree/TreeCanvas.js.map +1 -1
  97. package/dist/components/tree/TreeCanvasBlock.d.ts +1 -1
  98. package/dist/components/tree/TreeCanvasBlock.js +3 -3
  99. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  100. package/dist/components/tree/TreeNodeMenu.d.ts +1 -1
  101. package/dist/components/tree/TreeNodeMenu.js +1 -1
  102. package/dist/components/tree/TreeNodeMenu.js.map +1 -1
  103. package/dist/components/tree/TreePanel.d.ts +1 -1
  104. package/dist/components/tree/TreePanel.js +1 -1
  105. package/dist/components/tree/TreePanel.js.map +1 -1
  106. package/dist/components/tree/TreeRuler.d.ts +1 -1
  107. package/dist/components/tree/dialogs/TreeNodeInfoDialog.d.ts +1 -1
  108. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js +1 -1
  109. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js.map +1 -1
  110. package/dist/components/tree/renderTreeCanvas.d.ts +1 -1
  111. package/dist/createPaletteMap.d.ts +7 -0
  112. package/dist/createPaletteMap.js +11 -0
  113. package/dist/createPaletteMap.js.map +1 -0
  114. package/dist/createPaletteMap.test.d.ts +1 -0
  115. package/dist/createPaletteMap.test.js +49 -0
  116. package/dist/createPaletteMap.test.js.map +1 -0
  117. package/dist/index.d.ts +3 -2
  118. package/dist/index.js +2 -2
  119. package/dist/index.js.map +1 -1
  120. package/dist/launchInterProScan.d.ts +1 -1
  121. package/dist/launchInterProScan.js +1 -1
  122. package/dist/launchInterProScan.js.map +1 -1
  123. package/dist/model/DataModel.d.ts +5 -5
  124. package/dist/model/DataModel.js +1 -1
  125. package/dist/model/DataModel.js.map +1 -1
  126. package/dist/model/DialogQueue.d.ts +2 -2
  127. package/dist/model/DialogQueue.js +1 -1
  128. package/dist/model/DialogQueue.js.map +1 -1
  129. package/dist/model/msaModel.d.ts +4 -4
  130. package/dist/model/msaModel.js +2 -2
  131. package/dist/model/msaModel.js.map +1 -1
  132. package/dist/model/treeModel.d.ts +10 -10
  133. package/dist/model/treeModel.js +2 -2
  134. package/dist/model/treeModel.js.map +1 -1
  135. package/dist/model.d.ts +524 -420
  136. package/dist/model.js +63 -40
  137. package/dist/model.js.map +1 -1
  138. package/dist/neighborJoining.test.js +1 -1
  139. package/dist/neighborJoining.test.js.map +1 -1
  140. package/dist/parseAsn1.test.js +1 -1
  141. package/dist/parseAsn1.test.js.map +1 -1
  142. package/dist/renderToSvg.d.ts +1 -1
  143. package/dist/renderToSvg.js +10 -10
  144. package/dist/renderToSvg.js.map +1 -1
  145. package/dist/reparseTree.d.ts +1 -1
  146. package/dist/rowCoordinateCalculations.js +1 -1
  147. package/dist/rowCoordinateCalculations.js.map +1 -1
  148. package/dist/rowCoordinateCalculations.test.js +1 -1
  149. package/dist/rowCoordinateCalculations.test.js.map +1 -1
  150. package/dist/seqPosToGlobalCol.js +1 -1
  151. package/dist/seqPosToGlobalCol.js.map +1 -1
  152. package/dist/seqPosToGlobalCol.test.js +1 -1
  153. package/dist/seqPosToGlobalCol.test.js.map +1 -1
  154. package/dist/util.d.ts +1 -1
  155. package/dist/vendor/copyToClipboard.d.ts +10 -0
  156. package/dist/vendor/copyToClipboard.js +113 -0
  157. package/dist/vendor/copyToClipboard.js.map +1 -0
  158. package/dist/vendor/fileSaver.d.ts +11 -0
  159. package/dist/vendor/fileSaver.js +80 -0
  160. package/dist/vendor/fileSaver.js.map +1 -0
  161. package/dist/version.d.ts +1 -1
  162. package/dist/version.js +1 -1
  163. package/dist/webpack.d.ts +2 -2
  164. package/dist/webpack.js +2 -2
  165. package/dist/webpack.js.map +1 -1
  166. package/package.json +26 -23
  167. package/src/colorSchemes.ts +1 -1
  168. package/src/components/ConservationTrack.tsx +3 -4
  169. package/src/components/Loading.tsx +3 -3
  170. package/src/components/MSAView.tsx +12 -9
  171. package/src/components/ResizeHandles.tsx +1 -1
  172. package/src/components/SequenceTextArea.tsx +2 -2
  173. package/src/components/TextTrack.tsx +3 -3
  174. package/src/components/Track.tsx +2 -2
  175. package/src/components/VerticalScrollbar.tsx +1 -1
  176. package/src/components/dialogs/AboutDialog.tsx +1 -1
  177. package/src/components/dialogs/AddTrackDialog.tsx +1 -1
  178. package/src/components/dialogs/DomainDialog.tsx +4 -4
  179. package/src/components/dialogs/ExportSVGDialog.tsx +2 -2
  180. package/src/components/dialogs/FeatureDialog.tsx +2 -2
  181. package/src/components/dialogs/InterProScanDialog.tsx +2 -2
  182. package/src/components/dialogs/MetadataDialog.tsx +2 -2
  183. package/src/components/dialogs/SettingsDialog.tsx +3 -3
  184. package/src/components/dialogs/TrackInfoDialog.tsx +2 -1
  185. package/src/components/dialogs/UserProvidedDomainsDialog.tsx +3 -3
  186. package/src/components/header/GappynessSlider.tsx +1 -1
  187. package/src/components/header/Header.tsx +11 -11
  188. package/src/components/header/HeaderInfoArea.tsx +1 -1
  189. package/src/components/header/HeaderMenu.tsx +9 -7
  190. package/src/components/header/HeaderStatusArea.tsx +1 -1
  191. package/src/components/header/MultiAlignmentSelector.tsx +1 -1
  192. package/src/components/header/SettingsMenu.tsx +2 -2
  193. package/src/components/header/ZoomControls.tsx +1 -1
  194. package/src/components/header/ZoomMenu.tsx +1 -1
  195. package/src/components/header/ZoomStar.tsx +1 -1
  196. package/src/components/import/ImportForm.tsx +3 -3
  197. package/src/components/import/ImportFormExamples.tsx +3 -3
  198. package/src/components/import/util.ts +1 -1
  199. package/src/components/minimap/Minimap.tsx +1 -1
  200. package/src/components/minimap/MinimapSVG.tsx +1 -1
  201. package/src/components/msa/MSACanvas.tsx +3 -3
  202. package/src/components/msa/MSACanvasBlock.tsx +4 -4
  203. package/src/components/msa/MSAMouseoverCanvas.tsx +3 -3
  204. package/src/components/msa/MSAPanel.tsx +3 -3
  205. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +2 -2
  206. package/src/components/msa/renderMSABlock.ts +2 -2
  207. package/src/components/msa/renderMSAMouseover.ts +1 -1
  208. package/src/components/tracks/renderTracksSvg.ts +2 -2
  209. package/src/components/tree/TreeBranchMenu.tsx +1 -1
  210. package/src/components/tree/TreeCanvas.tsx +4 -4
  211. package/src/components/tree/TreeCanvasBlock.tsx +4 -4
  212. package/src/components/tree/TreeNodeMenu.tsx +4 -2
  213. package/src/components/tree/TreePanel.tsx +2 -2
  214. package/src/components/tree/TreeRuler.tsx +1 -1
  215. package/src/components/tree/dialogs/TreeNodeInfoDialog.tsx +2 -2
  216. package/src/components/tree/renderTreeCanvas.ts +1 -1
  217. package/src/createPaletteMap.test.ts +57 -0
  218. package/src/createPaletteMap.ts +11 -0
  219. package/src/index.ts +3 -2
  220. package/src/launchInterProScan.ts +2 -2
  221. package/src/model/DataModel.ts +1 -1
  222. package/src/model/DialogQueue.ts +1 -1
  223. package/src/model/msaModel.ts +2 -2
  224. package/src/model/treeModel.ts +2 -2
  225. package/src/model.ts +71 -46
  226. package/src/neighborJoining.test.ts +1 -1
  227. package/src/parseAsn1.test.ts +1 -1
  228. package/src/renderToSvg.tsx +17 -19
  229. package/src/reparseTree.ts +1 -1
  230. package/src/rowCoordinateCalculations.test.ts +1 -1
  231. package/src/rowCoordinateCalculations.ts +1 -1
  232. package/src/seqPosToGlobalCol.test.ts +1 -1
  233. package/src/seqPosToGlobalCol.ts +1 -1
  234. package/src/util.ts +1 -1
  235. package/src/vendor/copyToClipboard.ts +125 -0
  236. package/src/vendor/fileSaver.ts +107 -0
  237. package/src/version.ts +1 -1
  238. package/src/webpack.ts +2 -2
  239. package/dist/__snapshots__/parseAsn1.test.js.snap +0 -2400
  240. package/src/declare.d.ts +0 -1

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