react-msaview 3.1.12 → 3.2.1

package/dist/components/header/HeaderInfoArea.js

@@ -8,13 +8,16 @@ const useStyles = makeStyles()({
         marginLeft: 10,
     },
 });
-const HeaderInfoArea = observer(({ model }) => {
+const HeaderInfoArea = observer(function ({ model }) {
     const { mouseOverRowName, mouseCol } = model;
     const { classes } = useStyles();
     return mouseOverRowName && mouseCol !== undefined ? (React.createElement(Typography, { className: classes.margin },
         mouseOverRowName,
         ":",
-        model.globalCoordToRowSpecificSeqCoord(mouseOverRowName, mouseCol))) : null;
+        model.mouseOverCoordToGapRemovedRowCoord(mouseOverRowName, mouseCol),
+        " (",
+        model.mouseOverCoordToRowLetter(mouseOverRowName, mouseCol),
+        ")")) : null;
 });
 export default HeaderInfoArea;
 //# sourceMappingURL=HeaderInfoArea.js.map

package/dist/components/header/HeaderInfoArea.js.map

@@ -1 +1 @@
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+{"version":3,"file":"HeaderInfoArea.js","sourceRoot":"","sources":["../../../src/components/header/HeaderInfoArea.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAK1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,MAAM,EAAE,MAAM;QACd,UAAU,EAAE,EAAE;KACf;CACF,CAAC,CAAA;AAEF,MAAM,cAAc,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAC1E,MAAM,EAAE,gBAAgB,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IAC5C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,gBAAgB,IAAI,QAAQ,KAAK,SAAS,CAAC,CAAC,CAAC,CAClD,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,MAAM;QAClC,gBAAgB;;QAChB,KAAK,CAAC,kCAAkC,CAAC,gBAAgB,EAAE,QAAQ,CAAC;;QACpE,KAAK,CAAC,yBAAyB,CAAC,gBAAgB,EAAE,QAAQ,CAAC;YACjD,CACd,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}

package/dist/components/header/HeaderMenu.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const HeaderMenu: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/header/HeaderMenu.js

@@ -16,21 +16,29 @@ const HeaderMenu = observer(function ({ model }) {
             {
                 label: 'Return to import form',
                 icon: FolderOpen,
-                onClick: () => model.reset(),
+                onClick: () => {
+                    model.reset();
+                },
             },
             {
                 label: 'Settings',
-                onClick: () => model.queueDialog(onClose => [SettingsDialog, { model, onClose }]),
+                onClick: () => {
+                    model.queueDialog(onClose => [SettingsDialog, { model, onClose }]);
+                },
                 icon: Settings,
             },
             {
                 label: 'Metadata',
-                onClick: () => model.queueDialog(onClose => [MetadataDialog, { model, onClose }]),
+                onClick: () => {
+                    model.queueDialog(onClose => [MetadataDialog, { model, onClose }]);
+                },
                 icon: Assignment,
             },
             {
                 label: 'Extra tracks',
-                onClick: () => model.queueDialog(onClose => [TracklistDialog, { model, onClose }]),
+                onClick: () => {
+                    model.queueDialog(onClose => [TracklistDialog, { model, onClose }]);
+                },
                 icon: List,
             },
         ] },

package/dist/components/header/HeaderMenu.js.map

@@ -1 +1 @@
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+{"version":3,"file":"HeaderMenu.js","sourceRoot":"","sources":["../../../src/components/header/HeaderMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AACnC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AAEtE,QAAQ;AACR,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAK3C,SAAS;AACT,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AACtE,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AACtE,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,4BAA4B,CAAC,CAAC,CAAA;AAExE,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,OAAO,CACL,oBAAC,mBAAmB,IAClB,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,uBAAuB;gBAC9B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,KAAK,EAAE,CAAA;gBACf,CAAC;aACF;YACD;gBACE,KAAK,EAAE,UAAU;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,cAAc,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBACpE,CAAC;gBACD,IAAI,EAAE,QAAQ;aACf;YACD;gBACE,KAAK,EAAE,UAAU;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,cAAc,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBACpE,CAAC;gBACD,IAAI,EAAE,UAAU;aACjB;YACD;gBACE,KAAK,EAAE,cAAc;gBACrB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,eAAe,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBACrE,CAAC;gBACD,IAAI,EAAE,IAAI;aACX;SACF;QAED,oBAAC,IAAI,OAAG,CACY,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/components/header/HeaderMenuExtra.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const HeaderMenuExtra: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/header/HeaderMenuExtra.js

@@ -1,83 +1,111 @@
 import React, { lazy } from 'react';
 import { observer } from 'mobx-react';
 import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
-// locals
 // icons
-import MoreVert from '@mui/icons-material/MoreVert';
+import MoreVert from '@mui/icons-material/Menu';
 import Sort from '@mui/icons-material/Sort';
 import Visibility from '@mui/icons-material/Visibility';
 import FilterAlt from '@mui/icons-material/FilterAlt';
 import Search from '@mui/icons-material/Search';
 import PhotoCamera from '@mui/icons-material/PhotoCamera';
-import RestartAlt from '@mui/icons-material/RestartAlt';
-import FolderOpen from '@mui/icons-material/FolderOpen';
 import Settings from '@mui/icons-material/Settings';
 import Assignment from '@mui/icons-material/Assignment';
 import List from '@mui/icons-material/List';
+import FolderOpen from '@mui/icons-material/FolderOpen';
 // lazies
 const SettingsDialog = lazy(() => import('../dialogs/SettingsDialog'));
 const MetadataDialog = lazy(() => import('../dialogs/MetadataDialog'));
 const TracklistDialog = lazy(() => import('../dialogs/TracklistDialog'));
 const ExportSVGDialog = lazy(() => import('../dialogs/ExportSVGDialog'));
 const FeatureFilterDialog = lazy(() => import('../dialogs/FeatureDialog'));
-const DomainDialog = lazy(() => import('../dialogs/DomainDialog'));
-const HeaderMenuExtra = observer(function ({ model }) {
-    const { showDomains, subFeatureRows, noAnnotations } = model;
+const UserProvidedDomainsDialog = lazy(() => import('../dialogs/UserProvidedDomainsDialog'));
+const InterProScanDialog = lazy(() => import('../dialogs/InterProScanDialog'));
+const HeaderMenuExtra = observer(({ model }) => {
+    const { showDomains, actuallyShowDomains, subFeatureRows, noDomains } = model;
     return (React.createElement(CascadingMenuButton, { menuItems: [
             {
                 label: 'Return to import form',
                 icon: FolderOpen,
-                onClick: () => model.reset(),
+                onClick: () => {
+                    model.reset();
+                },
             },
             {
                 label: 'Settings',
-                onClick: () => model.queueDialog(onClose => [SettingsDialog, { model, onClose }]),
+                onClick: () => {
+                    model.queueDialog(onClose => [SettingsDialog, { model, onClose }]);
+                },
                 icon: Settings,
             },
             {
                 label: 'Metadata',
-                onClick: () => model.queueDialog(onClose => [MetadataDialog, { model, onClose }]),
+                onClick: () => {
+                    model.queueDialog(onClose => [MetadataDialog, { model, onClose }]);
+                },
                 icon: Assignment,
             },
             {
                 label: 'Extra tracks',
-                onClick: () => model.queueDialog(onClose => [TracklistDialog, { model, onClose }]),
-                icon: List,
-            },
-            {
-                label: 'Reset zoom to default',
-                icon: RestartAlt,
                 onClick: () => {
-                    model.setColWidth(16);
-                    model.setRowHeight(20);
+                    model.queueDialog(onClose => [TracklistDialog, { model, onClose }]);
                 },
+                icon: List,
             },
             {
                 label: 'Export SVG',
                 icon: PhotoCamera,
-                onClick: () => model.queueDialog(onClose => [ExportSVGDialog, { onClose, model }]),
+                onClick: () => {
+                    model.queueDialog(onClose => [ExportSVGDialog, { onClose, model }]);
+                },
             },
             {
                 label: 'Features/protein domains',
                 type: 'subMenu',
                 subMenu: [
                     {
-                        label: 'Show domains' + (noAnnotations ? ' (no domains loaded)' : ''),
+                        label: 'Open domains...',
+                        icon: FolderOpen,
+                        onClick: () => {
+                            model.queueDialog(handleClose => [
+                                UserProvidedDomainsDialog,
+                                { handleClose, model },
+                            ]);
+                        },
+                    },
+                    {
+                        label: 'Query InterProScan for domains...',
+                        icon: Search,
+                        onClick: () => {
+                            model.queueDialog(handleClose => [
+                                InterProScanDialog,
+                                { handleClose, model },
+                            ]);
+                        },
+                    },
+                    {
+                        label: `Show domains${noDomains ? ' (no domains loaded)' : ''}`,
+                        disabled: noDomains,
                         icon: Visibility,
-                        checked: showDomains,
+                        checked: actuallyShowDomains ? showDomains : false,
                         type: 'checkbox',
-                        onClick: () => model.setShowDomains(!showDomains),
+                        onClick: () => {
+                            model.setShowDomains(!showDomains);
+                        },
                     },
                     {
-                        label: 'Use sub-row layout',
-                        checked: subFeatureRows,
+                        label: `Use sub-row layout${noDomains ? ' (no domains loaded)' : ''}`,
+                        disabled: noDomains,
+                        checked: actuallyShowDomains ? subFeatureRows : false,
                         icon: Sort,
                         type: 'checkbox',
-                        onClick: () => model.setSubFeatureRows(!subFeatureRows),
+                        onClick: () => {
+                            model.setSubFeatureRows(!subFeatureRows);
+                        },
                     },
                     {
-                        label: 'Filter domains',
+                        label: `Filter domains${noDomains ? ' (no domains loaded)' : ''}`,
                         icon: FilterAlt,
+                        disabled: noDomains,
                         onClick: () => {
                             model.queueDialog(onClose => [
                                 FeatureFilterDialog,
@@ -85,17 +113,9 @@ const HeaderMenuExtra = observer(function ({ model }) {
                             ]);
                         },
                     },
-                    {
-                        label: 'View domains',
-                        icon: Search,
-                        onClick: () => model.queueDialog(handleClose => [
-                            DomainDialog,
-                            { handleClose, model },
-                        ]),
-                    },
                 ],
             },
-            ...(model.extraViewMenuItems?.() || []),
+            ...model.extraViewMenuItems(),
         ] },
         React.createElement(MoreVert, null)));
 });

package/dist/components/header/HeaderMenuExtra.js.map

@@ -1 +1 @@
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package/dist/components/header/HeaderStatusArea.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
-declare const HeaderStatusArea: ({ model, }: {
+import type { MsaViewModel } from '../../model';
+declare const HeaderStatusArea: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element | null;
 export default HeaderStatusArea;

package/dist/components/header/HeaderStatusArea.js

@@ -9,7 +9,7 @@ const useStyles = makeStyles()({
         marginLeft: 10,
     },
 });
-const HeaderStatusArea = observer(function ({ model, }) {
+const HeaderStatusArea = observer(({ model }) => {
     const { status } = model;
     const { classes } = useStyles();
     return status ? (React.createElement(Typography, { className: classes.margin },

package/dist/components/header/HeaderStatusArea.js.map

@@ -1 +1 @@
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+{"version":3,"file":"HeaderStatusArea.js","sourceRoot":"","sources":["../../../src/components/header/HeaderStatusArea.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAKlD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,MAAM,EAAE,MAAM;QACd,UAAU,EAAE,EAAE;KACf;CACF,CAAC,CAAA;AAEF,MAAM,gBAAgB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IACvE,MAAM,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IACxB,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,MAAM,CAAC,CAAC,CAAC,CACd,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,MAAM;QACnC,oBAAC,eAAe,IAAC,OAAO,EAAE,MAAM,CAAC,GAAG,EAAE,SAAS,EAAC,MAAM,GAAG;QAAC,GAAG;QAC5D,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CACZ,2BAAG,IAAI,EAAE,MAAM,CAAC,GAAG,EAAE,MAAM,EAAC,QAAQ,EAAC,GAAG,EAAC,YAAY,eAEjD,CACL,CAAC,CAAC,CAAC,IAAI,CACG,CACd,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}

package/dist/components/header/MultiAlignmentSelector.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const MultiAlignmentSelector: ({ model, }: {
     model: MsaViewModel;
 }) => React.JSX.Element | null;

package/dist/components/header/ZoomControls.js

@@ -1,15 +1,57 @@
 import React from 'react';
 import { IconButton } from '@mui/material';
 import { observer } from 'mobx-react';
+import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
 // icons
 import ZoomIn from '@mui/icons-material/ZoomIn';
 import ZoomOut from '@mui/icons-material/ZoomOut';
+import MoreVert from '@mui/icons-material/MoreVert';
+import RestartAlt from '@mui/icons-material/RestartAlt';
 const ZoomControls = observer(function ZoomControls({ model, }) {
     return (React.createElement(React.Fragment, null,
-        React.createElement(IconButton, { onClick: () => model.zoomIn() },
+        React.createElement(IconButton, { onClick: () => {
+                model.zoomIn();
+            } },
             React.createElement(ZoomIn, null)),
-        React.createElement(IconButton, { onClick: () => model.zoomOut() },
-            React.createElement(ZoomOut, null))));
+        React.createElement(IconButton, { onClick: () => {
+                model.zoomOut();
+            } },
+            React.createElement(ZoomOut, null)),
+        React.createElement(CascadingMenuButton, { menuItems: [
+                {
+                    label: 'Zoom in horizontal',
+                    onClick: () => {
+                        model.zoomInHorizontal();
+                    },
+                },
+                {
+                    label: 'Zoom in vertical',
+                    onClick: () => {
+                        model.zoomInVertical();
+                    },
+                },
+                {
+                    label: 'Zoom out horizontal',
+                    onClick: () => {
+                        model.zoomOutHorizontal();
+                    },
+                },
+                {
+                    label: 'Zoom out vertical',
+                    onClick: () => {
+                        model.zoomOutVertical();
+                    },
+                },
+                {
+                    label: 'Reset zoom to default',
+                    icon: RestartAlt,
+                    onClick: () => {
+                        model.setColWidth(16);
+                        model.setRowHeight(20);
+                    },
+                },
+            ] },
+            React.createElement(MoreVert, null))));
 });
 export default ZoomControls;
 //# sourceMappingURL=ZoomControls.js.map

package/dist/components/header/ZoomControls.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/components/header/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AAKtE,QAAQ;AACR,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AAEvD,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,OAAO,CACL;QACE,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,MAAM,EAAE,CAAA;YAChB,CAAC;YAED,oBAAC,MAAM,OAAG,CACC;QACb,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,OAAO,EAAE,CAAA;YACjB,CAAC;YAED,oBAAC,OAAO,OAAG,CACA;QACb,oBAAC,mBAAmB,IAClB,SAAS,EAAE;gBACT;oBACE,KAAK,EAAE,oBAAoB;oBAC3B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,gBAAgB,EAAE,CAAA;oBAC1B,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,kBAAkB;oBACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,EAAE,CAAA;oBACxB,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,qBAAqB;oBAC5B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,iBAAiB,EAAE,CAAA;oBAC3B,CAAC;iBACF;gBAED;oBACE,KAAK,EAAE,mBAAmB;oBAC1B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,eAAe,EAAE,CAAA;oBACzB,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,uBAAuB;oBAC9B,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;wBACrB,KAAK,CAAC,YAAY,CAAC,EAAE,CAAC,CAAA;oBACxB,CAAC;iBACF;aACF;YAED,oBAAC,QAAQ,OAAG,CACQ,CACrB,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,YAAY,CAAA"}

package/dist/components/import/ImportForm.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
-declare const _default: ({ model }: {
+import type { MsaViewModel } from '../../model';
+declare const ImportForm: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;
-export default _default;
+export default ImportForm;

package/dist/components/import/ImportForm.js

@@ -4,7 +4,7 @@ import { Button, Container, Grid, Typography } from '@mui/material';
 import { FileSelector } from '@jbrowse/core/ui';
 import { load } from './util';
 import ImportFormExamples from './ImportFormExamples';
-export default observer(({ model }) => {
+const ImportForm = observer(function ({ model }) {
     const [msaFile, setMsaFile] = useState();
     const [treeFile, setTreeFile] = useState();
     const { error } = model;
@@ -23,9 +23,22 @@ export default observer(({ model }) => {
                 React.createElement(Typography, null, "Tree file or URL"),
                 React.createElement(FileSelector, { location: treeFile, setLocation: setTreeFile })),
             React.createElement(Grid, { item: true },
-                React.createElement(Button, { onClick: () => load(model, msaFile, treeFile), variant: "contained", color: "primary", disabled: !msaFile && !treeFile }, "Open")),
+                React.createElement(Button, { onClick: () => {
+                        // eslint-disable-next-line @typescript-eslint/no-floating-promises
+                        ;
+                        (async () => {
+                            try {
+                                await load(model, msaFile, treeFile);
+                            }
+                            catch (e) {
+                                console.error(e);
+                                model.setError(e);
+                            }
+                        })();
+                    }, variant: "contained", color: "primary", disabled: !msaFile && !treeFile }, "Open")),
             React.createElement(Grid, { item: true },
                 React.createElement(Typography, null, "Examples"),
                 React.createElement(ImportFormExamples, { model: model })))));
 });
+export default ImportForm;
 //# sourceMappingURL=ImportForm.js.map

package/dist/components/import/ImportForm.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/components/import/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACnE,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAK/C,OAAO,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAC7B,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AAErD,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAEvB,OAAO,CACL,oBAAC,SAAS;QACR,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE;YACzB,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE;gBACzB,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO;;oBAAS,GAAG,KAAK,EAAE,CAAc,CACtD,CACP,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,UAAU,6FAGE;YACb,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,mNAKZ,CACT;QAEN,oBAAC,IAAI,IAAC,SAAS,QAAC,OAAO,EAAE,EAAE,EAAE,cAAc,EAAC,QAAQ,EAAC,UAAU,EAAC,QAAQ;YACtE,oBAAC,IAAI,IAAC,IAAI;gBACR,oBAAC,UAAU,0BAA6B;gBACxC,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI;gBAC5D,oBAAC,UAAU,2BAA8B;gBACzC,oBAAC,YAAY,IAAC,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,WAAW,GAAI,CACzD;YAEP,oBAAC,IAAI,IAAC,IAAI;gBACR,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;wBACZ,mEAAmE;wBACnE,CAAC;wBAAA,CAAC,KAAK,IAAI,EAAE;4BACX,IAAI,CAAC;gCACH,MAAM,IAAI,CAAC,KAAK,EAAE,OAAO,EAAE,QAAQ,CAAC,CAAA;4BACtC,CAAC;4BAAC,OAAO,CAAC,EAAE,CAAC;gCACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gCAChB,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;4BACnB,CAAC;wBACH,CAAC,CAAC,EAAE,CAAA;oBACN,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,OAAO,IAAI,CAAC,QAAQ,WAGxB,CACJ;YAEP,oBAAC,IAAI,IAAC,IAAI;gBACR,oBAAC,UAAU,mBAAsB;gBACjC,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CAC/B,CACF,CACG,CACb,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}

package/dist/components/import/ImportFormExamples.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const ImportFormExamples: ({ model, }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/import/ImportFormExamples.js

@@ -3,52 +3,67 @@ import { Typography, Link } from '@mui/material';
 import { observer } from 'mobx-react';
 import { smallTree, smallMSA, smallMSAOnly } from './data/seq2';
 import { load } from './util';
-const ListItem = ({ onClick, model, children, }) => (React.createElement("li", null,
-    React.createElement(Link, { onClick: event => {
-            model.setError(undefined);
-            event.preventDefault();
-            onClick();
-        }, href: "#" },
-        React.createElement(Typography, { display: "inline" }, children))));
+function ListItem({ onClick, model, children, }) {
+    return (React.createElement("li", null,
+        React.createElement(Link, { onClick: event => {
+                model.setError(undefined);
+                event.preventDefault();
+                onClick();
+            }, href: "#" },
+            React.createElement(Typography, { display: "inline" }, children))));
+}
 const ImportFormExamples = observer(function ({ model, }) {
+    function l2(uri1, uri2) {
+        // eslint-disable-next-line @typescript-eslint/no-floating-promises
+        ;
+        (async () => {
+            try {
+                await load(model, uri1
+                    ? {
+                        uri: uri1,
+                        locationType: 'UriLocation',
+                    }
+                    : undefined, uri2
+                    ? {
+                        uri: uri2,
+                        locationType: 'UriLocation',
+                    }
+                    : undefined);
+            }
+            catch (e) {
+                console.error(e);
+                model.setError(e);
+            }
+        })();
+    }
     return (React.createElement("ul", null,
-        React.createElement(ListItem, { model: model, onClick: () => load(model, undefined, {
-                uri: 'https://jbrowse.org/genomes/newick_trees/sarscov2phylo.pub.ft.nh',
-                locationType: 'UriLocation',
-            }) }, "230k COVID-19 samples (tree only)"),
+        React.createElement(ListItem, { model: model, onClick: () => {
+                l2(undefined, 'https://jbrowse.org/genomes/newicktrees/sarscov2phylo.pub.ft.nh');
+            } }, "230k COVID-19 samples (tree only)"),
         React.createElement(ListItem, { model: model, onClick: () => {
                 model.setData({ msa: smallMSA, tree: smallTree });
             } }, "Small protein MSA+tree"),
         React.createElement(ListItem, { model: model, onClick: () => {
                 model.setData({ msa: smallMSAOnly });
             } }, "Small MSA only"),
-        React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/pfam-cov2.stock',
-                locationType: 'UriLocation',
-            }) }, "PFAM SARS-CoV2 multi-stockholm"),
-        React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/Lysine.stock',
-                locationType: 'UriLocation',
-            }) }, "Lysine stockholm file"),
-        React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/PF01601_full.txt',
-                locationType: 'UriLocation',
-            }) }, "PF01601 stockholm file (SARS-CoV2 spike protein)"),
-        React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/europe_covid.fa',
-                locationType: 'UriLocation',
-            }) }, "Europe COVID full genomes (LR883044.1 and 199 other sequences)"),
-        React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.fa',
-                locationType: 'UriLocation',
-            }, {
-                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.nh',
-                locationType: 'UriLocation',
-            }) }, "MAFFT+VeryFastTree(17.9k samples)"),
-        React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                uri: 'https://jbrowse.org/demos/ttc39a.mfa',
-                locationType: 'UriLocation',
-            }) }, "Human BLAST results mfa")));
+        React.createElement(ListItem, { model: model, onClick: () => {
+                l2('https://jbrowse.org/genomes/multiple_sequence_alignments/pfam-cov2.stock');
+            } }, "PFAM SARS-CoV2 multi-stockholm"),
+        React.createElement(ListItem, { model: model, onClick: () => {
+                l2('https://jbrowse.org/genomes/multiple_sequence_alignments/Lysine.stock');
+            } }, "Lysine stockholm file"),
+        React.createElement(ListItem, { model: model, onClick: () => {
+                l2('https://jbrowse.org/genomes/multiple_sequence_alignments/PF01601_full.txt');
+            } }, "PF01601 stockholm file (SARS-CoV2 spike protein)"),
+        React.createElement(ListItem, { model: model, onClick: () => {
+                l2('https://jbrowse.org/genomes/multiple_sequence_alignments/europe_covid.fa');
+            } }, "Europe COVID full genomes (LR883044.1 and 199 other sequences)"),
+        React.createElement(ListItem, { model: model, onClick: () => {
+                l2('https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.fa', 'https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.nh');
+            } }, "MAFFT+VeryFastTree(17.9k samples)"),
+        React.createElement(ListItem, { model: model, onClick: () => {
+                l2('https://jbrowse.org/demos/ttc39a.mfa');
+            } }, "Human BLAST results mfa")));
 });
 export default ImportFormExamples;
 //# sourceMappingURL=ImportFormExamples.js.map

package/dist/components/import/ImportFormExamples.js.map

@@ -1 +1 @@
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package/dist/components/import/util.d.ts

@@ -1,3 +1,3 @@
-import { FileLocation } from '@jbrowse/core/util';
-import { MsaViewModel } from '../../model';
+import type { FileLocation } from '@jbrowse/core/util';
+import type { MsaViewModel } from '../../model';
 export declare function load(model: MsaViewModel, msaFile?: FileLocation, treeFile?: FileLocation): Promise<void>;

package/dist/components/minimap/Minimap.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const Minimap: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;