react-msaview 3.1.12 → 3.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (233) hide show
  1. package/bundle/index.js +32 -31
  2. package/dist/colorSchemes.d.ts +2 -2
  3. package/dist/colorSchemes.js +5 -6
  4. package/dist/colorSchemes.js.map +1 -1
  5. package/dist/components/Loading.d.ts +1 -1
  6. package/dist/components/Loading.js +7 -5
  7. package/dist/components/Loading.js.map +1 -1
  8. package/dist/components/MSAView.d.ts +1 -1
  9. package/dist/components/MSAView.js +13 -9
  10. package/dist/components/MSAView.js.map +1 -1
  11. package/dist/components/ResizeHandles.d.ts +1 -1
  12. package/dist/components/ResizeHandles.js +8 -4
  13. package/dist/components/ResizeHandles.js.map +1 -1
  14. package/dist/components/SequenceTextArea.js +9 -3
  15. package/dist/components/SequenceTextArea.js.map +1 -1
  16. package/dist/components/TextTrack.d.ts +1 -1
  17. package/dist/components/TextTrack.js +1 -1
  18. package/dist/components/TextTrack.js.map +1 -1
  19. package/dist/components/Track.d.ts +1 -1
  20. package/dist/components/Track.js +6 -2
  21. package/dist/components/Track.js.map +1 -1
  22. package/dist/components/VerticalScrollbar.d.ts +6 -0
  23. package/dist/components/VerticalScrollbar.js +69 -0
  24. package/dist/components/VerticalScrollbar.js.map +1 -0
  25. package/dist/components/dialogs/AboutDialog.js +3 -1
  26. package/dist/components/dialogs/AboutDialog.js.map +1 -1
  27. package/dist/components/dialogs/AddTrackDialog.d.ts +3 -3
  28. package/dist/components/dialogs/AddTrackDialog.js +8 -3
  29. package/dist/components/dialogs/AddTrackDialog.js.map +1 -1
  30. package/dist/components/dialogs/DomainDialog.d.ts +1 -1
  31. package/dist/components/dialogs/DomainDialog.js +8 -4
  32. package/dist/components/dialogs/DomainDialog.js.map +1 -1
  33. package/dist/components/dialogs/ExportSVGDialog.d.ts +1 -1
  34. package/dist/components/dialogs/ExportSVGDialog.js +29 -17
  35. package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
  36. package/dist/components/dialogs/FeatureDialog.d.ts +1 -1
  37. package/dist/components/dialogs/FeatureDialog.js +8 -4
  38. package/dist/components/dialogs/FeatureDialog.js.map +1 -1
  39. package/dist/components/dialogs/{InterProScanPanel.d.ts → InterProScanDialog.d.ts} +1 -1
  40. package/dist/components/dialogs/{InterProScanPanel.js → InterProScanDialog.js} +26 -11
  41. package/dist/components/dialogs/InterProScanDialog.js.map +1 -0
  42. package/dist/components/dialogs/MetadataDialog.d.ts +1 -1
  43. package/dist/components/dialogs/MetadataDialog.js +3 -1
  44. package/dist/components/dialogs/MetadataDialog.js.map +1 -1
  45. package/dist/components/dialogs/SettingsDialog.d.ts +1 -1
  46. package/dist/components/dialogs/SettingsDialog.js +62 -15
  47. package/dist/components/dialogs/SettingsDialog.js.map +1 -1
  48. package/dist/components/dialogs/TracklistDialog.d.ts +3 -3
  49. package/dist/components/dialogs/TracklistDialog.js +8 -3
  50. package/dist/components/dialogs/TracklistDialog.js.map +1 -1
  51. package/dist/components/dialogs/UserProvidedDomainsDialog.d.ts +7 -0
  52. package/dist/components/dialogs/UserProvidedDomainsDialog.js +64 -0
  53. package/dist/components/dialogs/UserProvidedDomainsDialog.js.map +1 -0
  54. package/dist/components/header/Header.d.ts +1 -1
  55. package/dist/components/header/Header.js +11 -4
  56. package/dist/components/header/Header.js.map +1 -1
  57. package/dist/components/header/HeaderInfoArea.d.ts +1 -1
  58. package/dist/components/header/HeaderInfoArea.js +5 -2
  59. package/dist/components/header/HeaderInfoArea.js.map +1 -1
  60. package/dist/components/header/HeaderMenu.d.ts +1 -1
  61. package/dist/components/header/HeaderMenu.js +12 -4
  62. package/dist/components/header/HeaderMenu.js.map +1 -1
  63. package/dist/components/header/HeaderMenuExtra.d.ts +1 -1
  64. package/dist/components/header/HeaderMenuExtra.js +55 -35
  65. package/dist/components/header/HeaderMenuExtra.js.map +1 -1
  66. package/dist/components/header/HeaderStatusArea.d.ts +2 -2
  67. package/dist/components/header/HeaderStatusArea.js +1 -1
  68. package/dist/components/header/HeaderStatusArea.js.map +1 -1
  69. package/dist/components/header/MultiAlignmentSelector.d.ts +1 -1
  70. package/dist/components/header/ZoomControls.js +45 -3
  71. package/dist/components/header/ZoomControls.js.map +1 -1
  72. package/dist/components/import/ImportForm.d.ts +3 -3
  73. package/dist/components/import/ImportForm.js +15 -2
  74. package/dist/components/import/ImportForm.js.map +1 -1
  75. package/dist/components/import/ImportFormExamples.d.ts +1 -1
  76. package/dist/components/import/ImportFormExamples.js +53 -38
  77. package/dist/components/import/ImportFormExamples.js.map +1 -1
  78. package/dist/components/import/util.d.ts +2 -2
  79. package/dist/components/minimap/Minimap.d.ts +1 -1
  80. package/dist/components/minimap/Minimap.js +24 -17
  81. package/dist/components/minimap/Minimap.js.map +1 -1
  82. package/dist/components/minimap/MinimapSVG.d.ts +1 -1
  83. package/dist/components/minimap/MinimapSVG.js +1 -1
  84. package/dist/components/minimap/MinimapSVG.js.map +1 -1
  85. package/dist/components/msa/MSACanvas.d.ts +1 -1
  86. package/dist/components/msa/MSACanvas.js +3 -3
  87. package/dist/components/msa/MSACanvas.js.map +1 -1
  88. package/dist/components/msa/MSACanvasBlock.d.ts +3 -3
  89. package/dist/components/msa/MSACanvasBlock.js +9 -6
  90. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  91. package/dist/components/msa/MSAMouseoverCanvas.d.ts +1 -1
  92. package/dist/components/msa/MSAPanel.d.ts +1 -1
  93. package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts +1 -1
  94. package/dist/components/msa/renderBoxFeatureCanvasBlock.js +3 -4
  95. package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -1
  96. package/dist/components/msa/renderMSABlock.d.ts +2 -2
  97. package/dist/components/msa/renderMSABlock.js +16 -16
  98. package/dist/components/msa/renderMSABlock.js.map +1 -1
  99. package/dist/components/msa/renderMSAMouseover.d.ts +1 -1
  100. package/dist/components/msa/renderMSAMouseover.js +3 -3
  101. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  102. package/dist/components/tree/TreeBranchMenu.d.ts +1 -1
  103. package/dist/components/tree/TreeBranchMenu.js +6 -3
  104. package/dist/components/tree/TreeBranchMenu.js.map +1 -1
  105. package/dist/components/tree/TreeCanvas.d.ts +1 -1
  106. package/dist/components/tree/TreeCanvas.js +13 -12
  107. package/dist/components/tree/TreeCanvas.js.map +1 -1
  108. package/dist/components/tree/TreeCanvasBlock.d.ts +1 -1
  109. package/dist/components/tree/TreeCanvasBlock.js +13 -5
  110. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  111. package/dist/components/tree/TreeNodeMenu.d.ts +1 -1
  112. package/dist/components/tree/TreeNodeMenu.js +3 -3
  113. package/dist/components/tree/TreeNodeMenu.js.map +1 -1
  114. package/dist/components/tree/TreePanel.d.ts +1 -1
  115. package/dist/components/tree/TreeRuler.d.ts +1 -1
  116. package/dist/components/tree/dialogs/TreeNodeInfoDialog.d.ts +3 -3
  117. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js +5 -2
  118. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js.map +1 -1
  119. package/dist/components/tree/renderTreeCanvas.d.ts +3 -3
  120. package/dist/components/tree/renderTreeCanvas.js +25 -9
  121. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  122. package/dist/components/util.js +1 -4
  123. package/dist/components/util.js.map +1 -1
  124. package/dist/ggplotPalettes.js.map +1 -1
  125. package/dist/launchInterProScan.d.ts +1 -1
  126. package/dist/launchInterProScan.js +11 -13
  127. package/dist/launchInterProScan.js.map +1 -1
  128. package/dist/model/DataModel.d.ts +5 -1
  129. package/dist/model/DataModel.js +10 -1
  130. package/dist/model/DataModel.js.map +1 -1
  131. package/dist/model/DialogQueue.d.ts +1 -1
  132. package/dist/model/DialogQueue.js +0 -1
  133. package/dist/model/DialogQueue.js.map +1 -1
  134. package/dist/model.d.ts +187 -35
  135. package/dist/model.js +317 -94
  136. package/dist/model.js.map +1 -1
  137. package/dist/parseGFF.js +8 -6
  138. package/dist/parseGFF.js.map +1 -1
  139. package/dist/parseNewick.js +1 -2
  140. package/dist/parseNewick.js.map +1 -1
  141. package/dist/parsers/ClustalMSA.d.ts +2 -2
  142. package/dist/parsers/ClustalMSA.js.map +1 -1
  143. package/dist/parsers/FastaMSA.d.ts +1 -1
  144. package/dist/parsers/FastaMSA.js +3 -3
  145. package/dist/parsers/FastaMSA.js.map +1 -1
  146. package/dist/parsers/StockholmMSA.d.ts +7 -7
  147. package/dist/parsers/StockholmMSA.js +4 -4
  148. package/dist/parsers/StockholmMSA.js.map +1 -1
  149. package/dist/renderToSvg.d.ts +2 -2
  150. package/dist/renderToSvg.js +6 -11
  151. package/dist/renderToSvg.js.map +1 -1
  152. package/dist/reparseTree.d.ts +1 -1
  153. package/dist/rowCoordinateCalculations.d.ts +2 -0
  154. package/dist/rowCoordinateCalculations.js +26 -0
  155. package/dist/rowCoordinateCalculations.js.map +1 -0
  156. package/dist/rowCoordinateCalculations.test.d.ts +1 -0
  157. package/dist/rowCoordinateCalculations.test.js +18 -0
  158. package/dist/rowCoordinateCalculations.test.js.map +1 -0
  159. package/dist/util.d.ts +2 -2
  160. package/dist/util.js +0 -2
  161. package/dist/util.js.map +1 -1
  162. package/dist/version.d.ts +1 -1
  163. package/dist/version.js +1 -1
  164. package/dist/version.js.map +1 -1
  165. package/package.json +10 -3
  166. package/src/colorSchemes.ts +7 -6
  167. package/src/components/Checkbox2.tsx +1 -1
  168. package/src/components/Loading.tsx +18 -6
  169. package/src/components/MSAView.tsx +27 -18
  170. package/src/components/ResizeHandles.tsx +9 -5
  171. package/src/components/SequenceTextArea.tsx +10 -4
  172. package/src/components/TextTrack.tsx +3 -3
  173. package/src/components/Track.tsx +9 -5
  174. package/src/components/VerticalScrollbar.tsx +89 -0
  175. package/src/components/dialogs/AboutDialog.tsx +7 -1
  176. package/src/components/dialogs/AddTrackDialog.tsx +15 -5
  177. package/src/components/dialogs/DomainDialog.tsx +12 -5
  178. package/src/components/dialogs/ExportSVGDialog.tsx +37 -18
  179. package/src/components/dialogs/FeatureDialog.tsx +10 -8
  180. package/src/components/dialogs/{InterProScanPanel.tsx → InterProScanDialog.tsx} +30 -13
  181. package/src/components/dialogs/MetadataDialog.tsx +9 -2
  182. package/src/components/dialogs/SettingsDialog.tsx +98 -19
  183. package/src/components/dialogs/TracklistDialog.tsx +18 -4
  184. package/src/components/dialogs/UserProvidedDomainsDialog.tsx +139 -0
  185. package/src/components/header/Header.tsx +12 -5
  186. package/src/components/header/HeaderInfoArea.tsx +4 -3
  187. package/src/components/header/HeaderMenu.tsx +13 -8
  188. package/src/components/header/HeaderMenuExtra.tsx +59 -43
  189. package/src/components/header/HeaderStatusArea.tsx +2 -6
  190. package/src/components/header/MultiAlignmentSelector.tsx +1 -1
  191. package/src/components/header/ZoomControls.tsx +52 -2
  192. package/src/components/import/ImportForm.tsx +16 -4
  193. package/src/components/import/ImportFormExamples.tsx +77 -64
  194. package/src/components/import/util.ts +2 -2
  195. package/src/components/minimap/Minimap.tsx +34 -29
  196. package/src/components/minimap/MinimapSVG.tsx +2 -2
  197. package/src/components/msa/MSACanvas.tsx +11 -4
  198. package/src/components/msa/MSACanvasBlock.tsx +10 -7
  199. package/src/components/msa/MSAMouseoverCanvas.tsx +1 -1
  200. package/src/components/msa/MSAPanel.tsx +1 -1
  201. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +8 -9
  202. package/src/components/msa/renderMSABlock.ts +44 -24
  203. package/src/components/msa/renderMSAMouseover.ts +4 -4
  204. package/src/components/tree/TreeBranchMenu.tsx +6 -4
  205. package/src/components/tree/TreeCanvas.tsx +15 -16
  206. package/src/components/tree/TreeCanvasBlock.tsx +14 -6
  207. package/src/components/tree/TreeNodeMenu.tsx +4 -4
  208. package/src/components/tree/TreePanel.tsx +1 -1
  209. package/src/components/tree/TreeRuler.tsx +1 -1
  210. package/src/components/tree/dialogs/TreeNodeInfoDialog.tsx +12 -3
  211. package/src/components/tree/renderTreeCanvas.ts +32 -12
  212. package/src/components/util.ts +2 -5
  213. package/src/ggplotPalettes.ts +1 -1
  214. package/src/launchInterProScan.ts +13 -15
  215. package/src/model/DataModel.ts +10 -0
  216. package/src/model/DialogQueue.ts +1 -2
  217. package/src/model.ts +355 -112
  218. package/src/parseGFF.ts +13 -11
  219. package/src/parseNewick.ts +4 -4
  220. package/src/parsers/ClustalMSA.ts +3 -3
  221. package/src/parsers/FastaMSA.ts +5 -5
  222. package/src/parsers/StockholmMSA.ts +11 -11
  223. package/src/renderToSvg.tsx +7 -8
  224. package/src/reparseTree.ts +1 -1
  225. package/src/rowCoordinateCalculations.test.ts +19 -0
  226. package/src/rowCoordinateCalculations.ts +26 -0
  227. package/src/util.ts +2 -4
  228. package/src/version.ts +1 -1
  229. package/dist/components/dialogs/InterProScanPanel.js.map +0 -1
  230. package/dist/components/dialogs/UserProvidedResultPanel.d.ts +0 -7
  231. package/dist/components/dialogs/UserProvidedResultPanel.js +0 -56
  232. package/dist/components/dialogs/UserProvidedResultPanel.js.map +0 -1
  233. package/src/components/dialogs/UserProvidedResultPanel.tsx +0 -119

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