react-msaview 3.1.12 → 3.2.0

package/src/util.ts

@@ -1,6 +1,6 @@
-import { HierarchyNode } from 'd3-hierarchy'
+import type { HierarchyNode } from 'd3-hierarchy'
 import { max } from 'd3-array'
-import { Theme } from '@mui/material'
+import type { Theme } from '@mui/material'
 import { colord, extend } from 'colord'
 import namesPlugin from 'colord/plugins/names'
 
@@ -106,8 +106,6 @@ export function collapse(d: HierarchyNode<NodeWithIds>) {
     // @ts-expect-error
     d._children = d.children
     // @ts-expect-error
-    d._children.forEach(collapse)
-    // @ts-expect-error
     d.children = null
   }
 }

package/src/version.ts

@@ -1 +1 @@
-export const version = '3.1.12'
+export const version = '3.2.0'

package/dist/components/dialogs/InterProScanPanel.js.map

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package/dist/components/dialogs/UserProvidedResultPanel.d.ts

@@ -1,7 +0,0 @@
-import React from 'react';
-import { MsaViewModel } from '../../model';
-declare const FeatureTypeDialog: ({ handleClose, model, }: {
-    handleClose: () => void;
-    model: MsaViewModel;
-}) => React.JSX.Element;
-export default FeatureTypeDialog;

package/dist/components/dialogs/UserProvidedResultPanel.js

@@ -1,56 +0,0 @@
-import React, { useState } from 'react';
-import { observer } from 'mobx-react';
-import { Button, DialogActions, DialogContent, FormControlLabel, FormControl, Radio, RadioGroup, TextField, Typography, } from '@mui/material';
-import { getSession } from '@jbrowse/core/util';
-import { jsonfetch } from '../../fetchUtils';
-const FeatureTypeDialog = observer(function ({ handleClose, model, }) {
-    const [file, setFile] = useState();
-    const [choice, setChoice] = useState('file');
-    const [interProURL, setInterProURL] = useState('');
-    return (React.createElement(React.Fragment, null,
-        React.createElement(DialogContent, null,
-            React.createElement("div", { style: { display: 'flex', margin: 30 } },
-                React.createElement(Typography, null, "Open a JSON file of InterProScan results that you run remotely on EBI servers or locally"),
-                React.createElement(FormControl, { component: "fieldset" },
-                    React.createElement(RadioGroup, { value: choice, onChange: event => setChoice(event.target.value) },
-                        React.createElement(FormControlLabel, { value: "url", control: React.createElement(Radio, null), label: "URL" }),
-                        React.createElement(FormControlLabel, { value: "file", control: React.createElement(Radio, null), label: "File" }))),
-                choice === 'url' ? (React.createElement("div", null,
-                    React.createElement(Typography, null, "Open a InterProScan JSON file remote URL"),
-                    React.createElement(TextField, { label: "URL", value: interProURL, onChange: event => setInterProURL(event.target.value) }))) : null,
-                choice === 'file' ? (React.createElement("div", { style: { paddingTop: 20 } },
-                    React.createElement(Typography, null, "Open a InterProScan JSON file file from your local drive"),
-                    React.createElement(Button, { variant: "outlined", component: "label" },
-                        "Choose File",
-                        React.createElement("input", { type: "file", hidden: true, onChange: ({ target }) => {
-                                const file = target?.files?.[0];
-                                if (file) {
-                                    setFile(file);
-                                }
-                            } })))) : null)),
-        React.createElement(DialogActions, null,
-            React.createElement(Button, { variant: "contained", color: "primary", onClick: () => {
-                    // eslint-disable-next-line @typescript-eslint/no-floating-promises
-                    ;
-                    (async () => {
-                        try {
-                            const ret = file
-                                ? JSON.parse(await file.text())
-                                : await jsonfetch(interProURL);
-                            model.setLoadedInterProAnnotations(Object.fromEntries(ret.results.map(r => [r.xref[0].id, r])));
-                            model.setShowDomains(true);
-                            getSession(model).notify('Loaded interproscan results', 'success');
-                        }
-                        catch (e) {
-                            console.error(e);
-                            getSession(model).notifyError(`${e}`, e);
-                        }
-                        finally {
-                            model.setStatus();
-                        }
-                    })();
-                    handleClose();
-                } }, "Open results"))));
-});
-export default FeatureTypeDialog;
-//# sourceMappingURL=UserProvidedResultPanel.js.map

package/dist/components/dialogs/UserProvidedResultPanel.js.map

@@ -1 +0,0 @@
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package/src/components/dialogs/UserProvidedResultPanel.tsx

@@ -1,119 +0,0 @@
-import React, { useState } from 'react'
-import { observer } from 'mobx-react'
-import {
-  Button,
-  DialogActions,
-  DialogContent,
-  FormControlLabel,
-  FormControl,
-  Radio,
-  RadioGroup,
-  TextField,
-  Typography,
-} from '@mui/material'
-import { getSession } from '@jbrowse/core/util'
-
-// locals
-import { MsaViewModel } from '../../model'
-import { jsonfetch } from '../../fetchUtils'
-import { InterProScanResponse } from '../../launchInterProScan'
-
-const FeatureTypeDialog = observer(function ({
-  handleClose,
-  model,
-}: {
-  handleClose: () => void
-  model: MsaViewModel
-}) {
-  const [file, setFile] = useState<File>()
-  const [choice, setChoice] = useState('file')
-  const [interProURL, setInterProURL] = useState('')
-
-  return (
-    <>
-      <DialogContent>
-        <div style={{ display: 'flex', margin: 30 }}>
-          <Typography>
-            Open a JSON file of InterProScan results that you run remotely on
-            EBI servers or locally
-          </Typography>
-
-          <FormControl component="fieldset">
-            <RadioGroup
-              value={choice}
-              onChange={event => setChoice(event.target.value)}
-            >
-              <FormControlLabel value="url" control={<Radio />} label="URL" />
-              <FormControlLabel value="file" control={<Radio />} label="File" />
-            </RadioGroup>
-          </FormControl>
-          {choice === 'url' ? (
-            <div>
-              <Typography>Open a InterProScan JSON file remote URL</Typography>
-              <TextField
-                label="URL"
-                value={interProURL}
-                onChange={event => setInterProURL(event.target.value)}
-              />
-            </div>
-          ) : null}
-          {choice === 'file' ? (
-            <div style={{ paddingTop: 20 }}>
-              <Typography>
-                Open a InterProScan JSON file file from your local drive
-              </Typography>
-              <Button variant="outlined" component="label">
-                Choose File
-                <input
-                  type="file"
-                  hidden
-                  onChange={({ target }) => {
-                    const file = target?.files?.[0]
-                    if (file) {
-                      setFile(file)
-                    }
-                  }}
-                />
-              </Button>
-            </div>
-          ) : null}
-        </div>
-      </DialogContent>
-      <DialogActions>
-        <Button
-          variant="contained"
-          color="primary"
-          onClick={() => {
-            // eslint-disable-next-line @typescript-eslint/no-floating-promises
-            ;(async () => {
-              try {
-                const ret: InterProScanResponse = file
-                  ? JSON.parse(await file.text())
-                  : await jsonfetch(interProURL)
-
-                model.setLoadedInterProAnnotations(
-                  Object.fromEntries(ret.results.map(r => [r.xref[0].id, r])),
-                )
-                model.setShowDomains(true)
-                getSession(model).notify(
-                  'Loaded interproscan results',
-                  'success',
-                )
-              } catch (e) {
-                console.error(e)
-                getSession(model).notifyError(`${e}`, e)
-              } finally {
-                model.setStatus()
-              }
-            })()
-            handleClose()
-          }}
-        >
-          Open results
-        </Button>
-      </DialogActions>
-    </>
-  )
-})
-
-export default FeatureTypeDialog