react-msaview 2.1.5 → 3.0.1

package/src/parsers/ClustalMSA.ts

@@ -12,7 +12,7 @@ export default class ClustalMSA {
   }
 
   getRow(name: string) {
-    return this.MSA.alns.find(aln => aln.id === name)?.seq.split('')
+    return this.MSA.alns.find(aln => aln.id === name)?.seq || ''
   }
 
   getWidth() {

package/src/parsers/FastaMSA.ts

@@ -36,7 +36,7 @@ export default class FastaMSA {
   }
 
   getRow(name: string) {
-    return this.MSA?.seqdata[name]?.split('')
+    return this.MSA?.seqdata[name] || ''
   }
 
   getWidth() {

package/src/parsers/StockholmMSA.ts

@@ -33,7 +33,7 @@ export default class StockholmMSA {
   }
 
   getRow(name: string) {
-    return this.MSA?.seqdata[name]?.split('')
+    return this.MSA?.seqdata[name] || ''
   }
 
   getWidth() {

package/src/util.ts

@@ -109,21 +109,23 @@ export function skipBlanks(blanks: number[], arg: string | string[]) {
   return s
 }
 
+// basically same as setRadius from https://observablehq.com/@d3/tree-of-life
 export function setBrLength(
   d: HierarchyNode<NodeWithIds>,
   y0: number,
   k: number,
 ) {
-  // @ts-expect-error
-  d.len = (y0 += Math.max(d.data.length || 0, 0)) * k
-  d.children?.forEach(d => {
-    setBrLength(d, y0, k)
-  })
+  if (d.children) {
+    d.children.forEach(d => {
+      setBrLength(d, y0, k)
+    })
+  }
 }
 
+// basically same as maxLength from https://observablehq.com/@d3/tree-of-life
 export function maxLength(d: HierarchyNode<NodeWithIds>): number {
   return (
-    (d.data.length || 1) + (d.children ? max(d.children, maxLength) || 0 : 0)
+    (d.data.length || 0) + (d.children ? max(d.children, maxLength) || 0 : 0)
   )
 }
 
@@ -140,6 +142,17 @@ export function collapse(d: HierarchyNode<NodeWithIds>) {
   }
 }
 
+// Collapse the node and all it's children, from
+// https://bl.ocks.org/d3noob/43a860bc0024792f8803bba8ca0d5ecd
+export function filterHiddenLeafNodes(
+  d: HierarchyNode<NodeWithIds> | null,
+  hiddenId?: string,
+) {
+  if (d?.children) {
+    d.children = d.children.filter(f => f.id !== hiddenId)
+  }
+}
+
 export function clamp(min: number, num: number, max: number) {
   return Math.min(Math.max(num, min), max)
 }

package/src/version.ts

@@ -1 +1 @@
-export const version = '2.1.5'
+export const version = '3.0.1'

package/dist/components/ImportForm.js

@@ -1,84 +0,0 @@
-import React, { useState } from 'react';
-import { Button, Container, Grid, Typography, Link } from '@mui/material';
-import { observer } from 'mobx-react';
-import { FileSelector } from '@jbrowse/core/ui';
-import { smallTree, smallMSA, smallMSAOnly } from './data/seq2';
-async function load(model, msaFile, treeFile) {
-    model.setError(undefined);
-    try {
-        if (msaFile) {
-            await model.setMSAFilehandle(msaFile);
-        }
-        if (treeFile) {
-            await model.setTreeFilehandle(treeFile);
-        }
-    }
-    catch (e) {
-        model.setError(e);
-    }
-}
-const ListItem = ({ onClick, model, children, }) => (React.createElement("li", null,
-    React.createElement(Link, { onClick: event => {
-            model.setError(undefined);
-            event.preventDefault();
-            onClick();
-        }, href: "#" },
-        React.createElement(Typography, { display: "inline" }, children))));
-export default observer(({ model }) => {
-    const [msaFile, setMsaFile] = useState();
-    const [treeFile, setTreeFile] = useState();
-    const { error } = model;
-    return (React.createElement(Container, null,
-        React.createElement("div", { style: { width: '50%' } },
-            error ? (React.createElement("div", { style: { padding: 20 } },
-                React.createElement(Typography, { color: "error" },
-                    "Error: ",
-                    `${error}`))) : null,
-            React.createElement(Typography, null, "Open an MSA file (stockholm or clustal format) and/or a tree file (newick format)."),
-            React.createElement(Typography, { color: "error" }, "Note: you can open up just an MSA or just a tree, both are not required. Some MSA files e.g. stockholm format have an embedded tree also and this is fine, and opening a separate tree file is not required.")),
-        React.createElement(Grid, { container: true, spacing: 10, justifyContent: "center", alignItems: "center" },
-            React.createElement(Grid, { item: true },
-                React.createElement(Typography, null, "MSA file or URL"),
-                React.createElement(FileSelector, { location: msaFile, setLocation: setMsaFile }),
-                React.createElement(Typography, null, "Tree file or URL"),
-                React.createElement(FileSelector, { location: treeFile, setLocation: setTreeFile })),
-            React.createElement(Grid, { item: true },
-                React.createElement(Button, { onClick: () => load(model, msaFile, treeFile), variant: "contained", color: "primary", disabled: !msaFile && !treeFile }, "Open")),
-            React.createElement(Grid, { item: true },
-                React.createElement(Typography, null, "Examples"),
-                React.createElement("ul", null,
-                    React.createElement(ListItem, { model: model, onClick: () => load(model, undefined, {
-                            uri: 'https://jbrowse.org/genomes/newick_trees/sarscov2phylo.pub.ft.nh',
-                            locationType: 'UriLocation',
-                        }) }, "230k COVID-19 samples (tree only)"),
-                    React.createElement(ListItem, { model: model, onClick: () => {
-                            model.setData({ msa: smallMSA, tree: smallTree });
-                        } }, "Small protein MSA+tree"),
-                    React.createElement(ListItem, { model: model, onClick: () => {
-                            model.setData({ msa: smallMSAOnly });
-                        } }, "Small MSA only"),
-                    React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                            uri: 'https://ihh.github.io/abrowse/build/pfam-cov2.stock',
-                            locationType: 'UriLocation',
-                        }) }, "PFAM SARS-CoV2 multi-stockholm"),
-                    React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                            uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/Lysine.stock',
-                            locationType: 'UriLocation',
-                        }) }, "Lysine stockholm file"),
-                    React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                            uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/PF01601_full.txt',
-                            locationType: 'UriLocation',
-                        }) }, "PF01601 stockholm file (SARS-CoV2 spike protein)"),
-                    React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                            uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/europe_covid.fa',
-                            locationType: 'UriLocation',
-                        }) }, "Europe COVID full genomes (LR883044.1 and 199 other sequences)"),
-                    React.createElement(ListItem, { model: model, onClick: () => load(model, {
-                            uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.fa',
-                            locationType: 'UriLocation',
-                        }, {
-                            uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.nh',
-                            locationType: 'UriLocation',
-                        }) }, "MAFFT+VeryFastTree(17.9k samples)"))))));
-});
-//# sourceMappingURL=ImportForm.js.map

package/dist/components/ImportForm.js.map

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package/dist/components/MSABlock.js

@@ -1,103 +0,0 @@
-import React, { useEffect, useRef, useMemo } from 'react';
-import { useTheme } from '@mui/material';
-import { observer } from 'mobx-react';
-import { colorContrast } from '../util';
-import { getClustalXColor, getPercentIdentityColor } from '../colorSchemes';
-const MSABlock = observer(function ({ model, offsetX, offsetY, }) {
-    const { MSA, colWidth, bgColor, columns, rowHeight, scrollY, scrollX, hierarchy, colorScheme, colorSchemeName, blockSize, highResScaleFactor, colStats, } = model;
-    const theme = useTheme();
-    const contrastScheme = useMemo(() => colorContrast(colorScheme, theme), [colorScheme, theme]);
-    const ref = useRef(null);
-    useEffect(() => {
-        var _a, _b;
-        if (!ref.current) {
-            return;
-        }
-        const ctx = ref.current.getContext('2d');
-        if (!ctx) {
-            return;
-        }
-        ctx.resetTransform();
-        ctx.scale(highResScaleFactor, highResScaleFactor);
-        ctx.clearRect(0, 0, blockSize, blockSize);
-        ctx.translate(-offsetX, rowHeight / 2 - offsetY);
-        ctx.textAlign = 'center';
-        ctx.font = ctx.font.replace(/\d+px/, `${Math.max(8, rowHeight - 8)}px`);
-        const leaves = hierarchy.leaves();
-        const b = blockSize;
-        // slice vertical rows, e.g. tree leaves, avoid negative slice
-        const yStart = Math.max(0, Math.floor((offsetY - rowHeight) / rowHeight));
-        const yEnd = Math.max(0, Math.ceil((offsetY + b + rowHeight) / rowHeight));
-        // slice horizontal visible letters, avoid negative slice
-        const xStart = Math.max(0, Math.floor(offsetX / colWidth));
-        const xEnd = Math.max(0, Math.ceil((offsetX + b) / colWidth));
-        const visibleLeaves = leaves.slice(yStart, yEnd);
-        for (const node of visibleLeaves) {
-            const { 
-            // @ts-expect-error
-            x: y, data: { name }, } = node;
-            const str = (_a = columns[name]) === null || _a === void 0 ? void 0 : _a.slice(xStart, xEnd);
-            for (let i = 0; i < (str === null || str === void 0 ? void 0 : str.length); i++) {
-                const letter = str[i];
-                const color = colorSchemeName === 'clustalx_protein_dynamic'
-                    ? getClustalXColor(colStats[xStart + i], model, name, xStart + i)
-                    : colorSchemeName === 'percent_identity_dynamic'
-                        ? getPercentIdentityColor(colStats[xStart + i], model, name, xStart + i)
-                        : colorScheme[letter.toUpperCase()];
-                if (bgColor) {
-                    const x = i * colWidth + offsetX - (offsetX % colWidth);
-                    ctx.fillStyle = color || 'white';
-                    ctx.fillRect(x, y - rowHeight, colWidth, rowHeight);
-                }
-            }
-        }
-        if (rowHeight >= 5 && colWidth > rowHeight / 2) {
-            for (const node of visibleLeaves) {
-                const { 
-                // @ts-expect-error
-                x: y, data: { name }, } = node;
-                const str = (_b = columns[name]) === null || _b === void 0 ? void 0 : _b.slice(xStart, xEnd);
-                for (let i = 0; i < (str === null || str === void 0 ? void 0 : str.length); i++) {
-                    const letter = str[i];
-                    const color = colorScheme[letter.toUpperCase()];
-                    const contrast = contrastScheme[letter.toUpperCase()] || 'black';
-                    const x = i * colWidth + offsetX - (offsetX % colWidth);
-                    // note: -rowHeight/4 matches +rowHeight/4 in tree
-                    ctx.fillStyle = bgColor ? contrast : color || 'black';
-                    ctx.fillText(letter, x + colWidth / 2, y - rowHeight / 4);
-                }
-            }
-        }
-        // eslint-disable-next-line react-hooks/exhaustive-deps
-    }, [
-        MSA,
-        highResScaleFactor,
-        columns,
-        colorScheme,
-        contrastScheme,
-        bgColor,
-        rowHeight,
-        colWidth,
-        hierarchy,
-        offsetX,
-        offsetY,
-        blockSize,
-    ]);
-    return (React.createElement("canvas", { ref: ref, onMouseMove: event => {
-            if (!ref.current) {
-                return;
-            }
-            const { left, top } = ref.current.getBoundingClientRect();
-            const mouseX = event.clientX - left + offsetX;
-            const mouseY = event.clientY - top + offsetY;
-            model.setMousePos(Math.floor(mouseX / colWidth) + 1, Math.floor(mouseY / rowHeight));
-        }, onMouseLeave: () => model.setMousePos(), width: blockSize * highResScaleFactor, height: blockSize * highResScaleFactor, style: {
-            position: 'absolute',
-            top: scrollY + offsetY,
-            left: scrollX + offsetX,
-            width: blockSize,
-            height: blockSize,
-        } }));
-});
-export default MSABlock;
-//# sourceMappingURL=MSABlock.js.map

package/dist/components/MSABlock.js.map

@@ -1 +0,0 @@
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package/dist/components/MSACanvas.js.map

@@ -1 +0,0 @@
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package/dist/components/MSAMouseoverCanvas.js

@@ -1,61 +0,0 @@
-import React, { useEffect, useRef } from 'react';
-import { observer } from 'mobx-react';
-import { sum } from '@jbrowse/core/util';
-const MSAMouseoverCanvas = observer(function ({ model, }) {
-    const ref = useRef(null);
-    const { height, width, treeAreaWidth, resizeHandleWidth, rulerHeight, turnedOnTracks, scrollX, scrollY, mouseCol, 
-    // @ts-expect-error
-    mouseCol2, mouseRow, rowHeight, colWidth, } = model;
-    const totalTrackAreaHeight = sum(turnedOnTracks.map(r => r.model.height));
-    useEffect(() => {
-        if (!ref.current) {
-            return;
-        }
-        const ctx = ref.current.getContext('2d');
-        if (!ctx) {
-            return;
-        }
-        ctx.resetTransform();
-        ctx.clearRect(0, 0, width, height);
-        if (mouseCol !== undefined) {
-            ctx.fillStyle = 'rgba(0,0,0,0.15)';
-            const x = (mouseCol - 1) * colWidth + scrollX + treeAreaWidth + resizeHandleWidth;
-            ctx.fillRect(x, 0, colWidth, height);
-        }
-        if (mouseRow !== undefined) {
-            ctx.fillStyle = 'rgba(0,0,0,0.15)';
-            const y = mouseRow * rowHeight + scrollY + rulerHeight + totalTrackAreaHeight;
-            ctx.fillRect(treeAreaWidth + resizeHandleWidth, y, width, rowHeight);
-        }
-        if (mouseCol2 !== undefined) {
-            ctx.fillStyle = 'rgba(255,255,0,0.2)';
-            const x = (mouseCol2 - 1) * colWidth + scrollX + treeAreaWidth + resizeHandleWidth;
-            ctx.fillRect(x, 0, colWidth, height);
-        }
-    }, [
-        mouseCol,
-        mouseCol2,
-        colWidth,
-        scrollY,
-        totalTrackAreaHeight,
-        mouseRow,
-        rowHeight,
-        rulerHeight,
-        scrollX,
-        height,
-        resizeHandleWidth,
-        treeAreaWidth,
-        width,
-    ]);
-    return (React.createElement("canvas", { ref: ref, width: width, height: height, style: {
-            position: 'absolute',
-            top: 0,
-            left: 0,
-            width,
-            height,
-            zIndex: 1000,
-            pointerEvents: 'none',
-        } }));
-});
-export default MSAMouseoverCanvas;
-//# sourceMappingURL=MSAMouseoverCanvas.js.map

package/dist/components/MSAMouseoverCanvas.js.map

@@ -1 +0,0 @@
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package/dist/components/Rubberband.d.ts

@@ -1,8 +0,0 @@
-import React from 'react';
-import { MsaViewModel } from '../model';
-declare function Rubberband({ model, ControlComponent, }: {
-    model: MsaViewModel;
-    ControlComponent?: React.ReactElement;
-}): React.JSX.Element;
-declare const _default: typeof Rubberband;
-export default _default;

package/dist/components/Rubberband.js

@@ -1,173 +0,0 @@
-import React, { useRef, useEffect, useState } from 'react';
-import { observer } from 'mobx-react';
-import { makeStyles } from 'tss-react/mui';
-import { Popover, Typography, alpha } from '@mui/material';
-import { Menu } from '@jbrowse/core/ui';
-// icons
-import AssignmentIcon from '@mui/icons-material/Assignment';
-import VerticalGuide from './VerticalGuide';
-const useStyles = makeStyles()(theme => {
-    const background = 'tertiary' in theme.palette && theme.palette.tertiary
-        ? alpha(theme.palette.tertiary.main, 0.7)
-        : alpha(theme.palette.primary.main, 0.7);
-    return {
-        rubberband: {
-            height: '100%',
-            background,
-            position: 'absolute',
-            zIndex: 10,
-            textAlign: 'center',
-            overflow: 'hidden',
-        },
-        rubberbandControl: {
-            cursor: 'crosshair',
-            width: '100%',
-            minHeight: 8,
-        },
-        rubberbandText: {
-            color: theme.palette.tertiary
-                ? theme.palette.tertiary.contrastText
-                : theme.palette.primary.contrastText,
-        },
-        popover: {
-            mouseEvents: 'none',
-            cursor: 'crosshair',
-        },
-        paper: {
-            paddingLeft: theme.spacing(1),
-            paddingRight: theme.spacing(1),
-        },
-    };
-});
-function Rubberband({ model, ControlComponent = React.createElement("div", null), }) {
-    const { treeAreaWidth } = model;
-    const [startX, setStartX] = useState();
-    const [currentX, setCurrentX] = useState();
-    // clientX and clientY used for anchorPosition for menu
-    // offsetX used for calculations about width of selection
-    const [anchorPosition, setAnchorPosition] = useState();
-    const [guideX, setGuideX] = useState();
-    const controlsRef = useRef(null);
-    const rubberbandRef = useRef(null);
-    const { classes } = useStyles();
-    const mouseDragging = startX !== undefined && anchorPosition === undefined;
-    useEffect(() => {
-        function globalMouseMove(event) {
-            if (controlsRef.current && mouseDragging) {
-                const relativeX = event.clientX - controlsRef.current.getBoundingClientRect().left;
-                setCurrentX(relativeX);
-            }
-        }
-        function globalMouseUp(event) {
-            if (startX !== undefined && controlsRef.current) {
-                const { clientX, clientY } = event;
-                const ref = controlsRef.current;
-                const offsetX = clientX - ref.getBoundingClientRect().left;
-                // as stated above, store both clientX/Y and offsetX for different
-                // purposes
-                setAnchorPosition({
-                    offsetX,
-                    clientX,
-                    clientY,
-                });
-                setGuideX(undefined);
-            }
-        }
-        if (mouseDragging) {
-            window.addEventListener('mousemove', globalMouseMove);
-            window.addEventListener('mouseup', globalMouseUp);
-            return () => {
-                window.removeEventListener('mousemove', globalMouseMove);
-                window.removeEventListener('mouseup', globalMouseUp);
-            };
-        }
-        return () => { };
-    }, [startX, mouseDragging, anchorPosition]);
-    useEffect(() => {
-        if (!mouseDragging &&
-            currentX !== undefined &&
-            startX !== undefined &&
-            Math.abs(currentX - startX) <= 3) {
-            handleClose();
-        }
-    }, [mouseDragging, currentX, startX, model.colWidth]);
-    function mouseDown(event) {
-        event.preventDefault();
-        event.stopPropagation();
-        const relativeX = event.clientX -
-            event.target.getBoundingClientRect().left;
-        setStartX(relativeX);
-        setCurrentX(relativeX);
-    }
-    function mouseMove(event) {
-        const target = event.target;
-        setGuideX(event.clientX - target.getBoundingClientRect().left);
-    }
-    function mouseOut() {
-        setGuideX(undefined);
-        model.clearAnnotationClickBoundaries();
-    }
-    function handleClose() {
-        setAnchorPosition(undefined);
-        setStartX(undefined);
-        setCurrentX(undefined);
-    }
-    function handleMenuItemClick(_, callback) {
-        callback();
-        handleClose();
-    }
-    if (startX === undefined) {
-        return (React.createElement(React.Fragment, null,
-            guideX !== undefined ? (React.createElement(VerticalGuide, { model: model, coordX: guideX })) : null,
-            React.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent)));
-    }
-    const right = anchorPosition ? anchorPosition.offsetX : currentX || 0;
-    const left = right < startX ? right : startX;
-    const width = Math.abs(right - startX);
-    const leftBpOffset = model.pxToBp(left);
-    const rightBpOffset = model.pxToBp(left + width);
-    const numOfBpSelected = Math.ceil(width / model.colWidth);
-    const menuItems = [
-        {
-            label: 'Create annotation',
-            icon: AssignmentIcon,
-            onClick: () => {
-                model.setAnnotationClickBoundaries(leftBpOffset, rightBpOffset);
-                handleClose();
-            },
-        },
-    ];
-    return (React.createElement(React.Fragment, null,
-        rubberbandRef.current ? (React.createElement(React.Fragment, null,
-            React.createElement(Popover, { className: classes.popover, classes: {
-                    paper: classes.paper,
-                }, open: true, anchorEl: rubberbandRef.current, anchorOrigin: {
-                    vertical: 'top',
-                    horizontal: 'left',
-                }, transformOrigin: {
-                    vertical: 'bottom',
-                    horizontal: 'right',
-                }, keepMounted: true, disableRestoreFocus: true },
-                React.createElement(Typography, null, leftBpOffset + 1)),
-            React.createElement(Popover, { className: classes.popover, classes: {
-                    paper: classes.paper,
-                }, open: true, anchorEl: rubberbandRef.current, anchorOrigin: {
-                    vertical: 'top',
-                    horizontal: 'right',
-                }, transformOrigin: {
-                    vertical: 'bottom',
-                    horizontal: 'left',
-                }, keepMounted: true, disableRestoreFocus: true },
-                React.createElement(Typography, null, rightBpOffset + 1)))) : null,
-        React.createElement("div", { ref: rubberbandRef, className: classes.rubberband, style: { left: left + treeAreaWidth, width } },
-            React.createElement(Typography, { variant: "h6", className: classes.rubberbandText },
-                numOfBpSelected.toLocaleString('en-US'),
-                " bp")),
-        React.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, role: "presentation", ref: controlsRef, onMouseDown: mouseDown, onMouseOut: mouseOut, onMouseMove: mouseMove }, ControlComponent),
-        anchorPosition ? (React.createElement(Menu, { anchorReference: "anchorPosition", anchorPosition: {
-                left: anchorPosition.clientX,
-                top: anchorPosition.clientY,
-            }, onMenuItemClick: handleMenuItemClick, open: Boolean(anchorPosition), onClose: handleClose, menuItems: menuItems })) : null));
-}
-export default observer(Rubberband);
-//# sourceMappingURL=Rubberband.js.map

package/dist/components/Rubberband.js.map

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package/dist/components/Ruler.d.ts

@@ -1,6 +0,0 @@
-import React from 'react';
-import { MsaViewModel } from '../model';
-declare const Ruler: ({ model }: {
-    model: MsaViewModel;
-}) => React.JSX.Element | null;
-export default Ruler;

package/dist/components/Ruler.js

@@ -1,52 +0,0 @@
-import React, { useRef } from 'react';
-import { makeStyles } from 'tss-react/mui';
-import { observer } from 'mobx-react';
-import { makeTicks, mathPower } from './util';
-const useStyles = makeStyles()({
-    majorTickLabel: {
-        fontSize: '11px',
-    },
-    majorTick: {
-        stroke: '#555',
-    },
-    minorTick: {
-        stroke: '#999',
-    },
-});
-function RulerBlock({ start, end, bpPerPx, reversed, major, minor, }) {
-    const { classes } = useStyles();
-    const ticks = makeTicks(start, end, bpPerPx, major, minor);
-    return (React.createElement(React.Fragment, null,
-        ticks.map(tick => {
-            const x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
-            return (React.createElement("line", { key: tick.base, x1: x, x2: x, y1: 11, y2: tick.type === 'major' ? 11 + 6 : 11 + 4, strokeWidth: 1, stroke: tick.type === 'major' ? '#555' : '#999', className: tick.type === 'major' ? classes.majorTick : classes.minorTick, "data-bp": tick.base }));
-        }),
-        ticks
-            .filter(tick => tick.type === 'major')
-            .map(tick => {
-            const x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
-            return (React.createElement("text", { x: x, y: 10, key: `label-${tick.base}`, textAnchor: "middle", style: { fontSize: '11px' }, className: classes.majorTickLabel }, mathPower(tick.base + 1)));
-        })));
-}
-const Ruler = observer(function ({ model }) {
-    const { MSA, colWidth, msaAreaWidth, rulerHeight, resizeHandleWidth, scrollX, blocksX, blockSize, } = model;
-    const ref = useRef(null);
-    const offsetX = blocksX[0];
-    return !MSA ? null : (React.createElement("div", { ref: ref, style: {
-            position: 'relative',
-            width: msaAreaWidth,
-            cursor: 'crosshair',
-            overflow: 'hidden',
-            height: rulerHeight,
-            background: '#ccc',
-        } },
-        React.createElement("svg", { style: {
-                width: blocksX.length * blockSize,
-                position: 'absolute',
-                left: scrollX + offsetX + resizeHandleWidth,
-                pointerEvents: 'none',
-            } },
-            React.createElement(RulerBlock, { key: offsetX, start: offsetX / colWidth, end: offsetX / colWidth + (blockSize * blocksX.length) / colWidth, bpPerPx: 1 / colWidth }))));
-});
-export default Ruler;
-//# sourceMappingURL=Ruler.js.map

package/dist/components/Ruler.js.map

@@ -1 +0,0 @@
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package/dist/components/TreeBranchMenu.js.map

@@ -1 +0,0 @@
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