react-msaview 2.1.5 → 3.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (199) hide show
  1. package/bundle/index.js +37 -255
  2. package/dist/DialogQueue.d.ts +25 -0
  3. package/dist/DialogQueue.js +46 -0
  4. package/dist/DialogQueue.js.map +1 -0
  5. package/dist/UniprotTrack.js.map +1 -1
  6. package/dist/colorSchemes.js.map +1 -1
  7. package/dist/components/BoxTrackBlock.js +3 -2
  8. package/dist/components/BoxTrackBlock.js.map +1 -1
  9. package/dist/components/Header.js +12 -20
  10. package/dist/components/Header.js.map +1 -1
  11. package/dist/components/HeaderInfoArea.d.ts +6 -0
  12. package/dist/components/HeaderInfoArea.js +12 -0
  13. package/dist/components/HeaderInfoArea.js.map +1 -0
  14. package/dist/components/ImportForm/ImportFormExamples.d.ts +6 -0
  15. package/dist/components/ImportForm/ImportFormExamples.js +50 -0
  16. package/dist/components/ImportForm/ImportFormExamples.js.map +1 -0
  17. package/dist/components/ImportForm/data/seq2.js.map +1 -0
  18. package/dist/components/{ImportForm.d.ts → ImportForm/index.d.ts} +1 -1
  19. package/dist/components/ImportForm/index.js +31 -0
  20. package/dist/components/ImportForm/index.js.map +1 -0
  21. package/dist/components/ImportForm/util.d.ts +3 -0
  22. package/dist/components/ImportForm/util.js +15 -0
  23. package/dist/components/ImportForm/util.js.map +1 -0
  24. package/dist/components/MSAPanel/Loading.d.ts +2 -0
  25. package/dist/components/MSAPanel/Loading.js +12 -0
  26. package/dist/components/MSAPanel/Loading.js.map +1 -0
  27. package/dist/components/{MSABlock.d.ts → MSAPanel/MSABlock.d.ts} +1 -1
  28. package/dist/components/MSAPanel/MSABlock.js +46 -0
  29. package/dist/components/MSAPanel/MSABlock.js.map +1 -0
  30. package/dist/components/{MSACanvas.d.ts → MSAPanel/MSACanvas.d.ts} +1 -1
  31. package/dist/components/{MSACanvas.js → MSAPanel/MSACanvas.js} +2 -4
  32. package/dist/components/MSAPanel/MSACanvas.js.map +1 -0
  33. package/dist/components/{MSAMouseoverCanvas.d.ts → MSAPanel/MSAMouseoverCanvas.d.ts} +1 -1
  34. package/dist/components/MSAPanel/MSAMouseoverCanvas.js +29 -0
  35. package/dist/components/MSAPanel/MSAMouseoverCanvas.js.map +1 -0
  36. package/dist/components/MSAPanel/index.d.ts +5 -0
  37. package/dist/components/MSAPanel/index.js +9 -0
  38. package/dist/components/MSAPanel/index.js.map +1 -0
  39. package/dist/components/MSAPanel/renderMSABlock.d.ts +8 -0
  40. package/dist/components/MSAPanel/renderMSABlock.js +80 -0
  41. package/dist/components/MSAPanel/renderMSABlock.js.map +1 -0
  42. package/dist/components/MSAPanel/renderMSAMouseover.d.ts +5 -0
  43. package/dist/components/MSAPanel/renderMSAMouseover.js +24 -0
  44. package/dist/components/MSAPanel/renderMSAMouseover.js.map +1 -0
  45. package/dist/components/MSAView.d.ts +2 -2
  46. package/dist/components/MSAView.js +26 -31
  47. package/dist/components/MSAView.js.map +1 -1
  48. package/dist/components/Minimap.d.ts +6 -0
  49. package/dist/components/Minimap.js +72 -0
  50. package/dist/components/Minimap.js.map +1 -0
  51. package/dist/components/ResizeHandles.js.map +1 -1
  52. package/dist/components/TextTrack.js +3 -2
  53. package/dist/components/TextTrack.js.map +1 -1
  54. package/dist/components/Track.js +5 -5
  55. package/dist/components/Track.js.map +1 -1
  56. package/dist/components/{TreeBranchMenu.d.ts → TreePanel/TreeBranchMenu.d.ts} +1 -1
  57. package/dist/components/TreePanel/TreeBranchMenu.js.map +1 -0
  58. package/dist/components/{TreeCanvas.d.ts → TreePanel/TreeCanvas.d.ts} +1 -1
  59. package/dist/components/{TreeCanvas.js → TreePanel/TreeCanvas.js} +1 -1
  60. package/dist/components/TreePanel/TreeCanvas.js.map +1 -0
  61. package/dist/components/{TreeCanvasBlock.d.ts → TreePanel/TreeCanvasBlock.d.ts} +1 -1
  62. package/dist/components/TreePanel/TreeCanvasBlock.js +121 -0
  63. package/dist/components/TreePanel/TreeCanvasBlock.js.map +1 -0
  64. package/dist/components/{TreeMenu.d.ts → TreePanel/TreeNodeMenu.d.ts} +2 -1
  65. package/dist/components/{TreeMenu.js → TreePanel/TreeNodeMenu.js} +16 -8
  66. package/dist/components/TreePanel/TreeNodeMenu.js.map +1 -0
  67. package/dist/components/{TreeRuler.d.ts → TreePanel/TreeRuler.d.ts} +1 -1
  68. package/dist/components/TreePanel/TreeRuler.js +8 -0
  69. package/dist/components/TreePanel/TreeRuler.js.map +1 -0
  70. package/dist/components/{dialogs/TreeNodeInfoDlg.d.ts → TreePanel/dialogs/TreeNodeInfoDialog.d.ts} +1 -1
  71. package/dist/components/{dialogs/TreeNodeInfoDlg.js → TreePanel/dialogs/TreeNodeInfoDialog.js} +2 -2
  72. package/dist/components/TreePanel/dialogs/TreeNodeInfoDialog.js.map +1 -0
  73. package/dist/components/TreePanel/index.d.ts +6 -0
  74. package/dist/components/TreePanel/index.js +10 -0
  75. package/dist/components/TreePanel/index.js.map +1 -0
  76. package/dist/components/TreePanel/renderTreeCanvas.d.ts +41 -0
  77. package/dist/components/TreePanel/renderTreeCanvas.js +154 -0
  78. package/dist/components/TreePanel/renderTreeCanvas.js.map +1 -0
  79. package/dist/components/dialogs/{AboutDlg.js → AboutDialog.js} +1 -1
  80. package/dist/components/dialogs/AboutDialog.js.map +1 -0
  81. package/dist/components/dialogs/{AddTrackDlg.js → AddTrackDialog.js} +1 -1
  82. package/dist/components/dialogs/AddTrackDialog.js.map +1 -0
  83. package/dist/components/dialogs/{MetadataDlg.js → MetadataDialog.js} +1 -1
  84. package/dist/components/dialogs/MetadataDialog.js.map +1 -0
  85. package/dist/components/dialogs/SettingsDialog.js +63 -0
  86. package/dist/components/dialogs/SettingsDialog.js.map +1 -0
  87. package/dist/components/dialogs/{TrackInfoDlg.js → TrackInfoDialog.js} +1 -1
  88. package/dist/components/dialogs/TrackInfoDialog.js.map +1 -0
  89. package/dist/components/dialogs/{TracklistDlg.js → TracklistDialog.js} +1 -1
  90. package/dist/components/dialogs/TracklistDialog.js.map +1 -0
  91. package/dist/components/util.js.map +1 -1
  92. package/dist/layout.js.map +1 -1
  93. package/dist/model.d.ts +179 -88
  94. package/dist/model.js +287 -175
  95. package/dist/model.js.map +1 -1
  96. package/dist/parseNewick.js.map +1 -1
  97. package/dist/parsers/ClustalMSA.d.ts +1 -1
  98. package/dist/parsers/ClustalMSA.js +1 -1
  99. package/dist/parsers/ClustalMSA.js.map +1 -1
  100. package/dist/parsers/FastaMSA.d.ts +1 -1
  101. package/dist/parsers/FastaMSA.js +2 -2
  102. package/dist/parsers/FastaMSA.js.map +1 -1
  103. package/dist/parsers/StockholmMSA.d.ts +1 -1
  104. package/dist/parsers/StockholmMSA.js +2 -2
  105. package/dist/parsers/StockholmMSA.js.map +1 -1
  106. package/dist/util.d.ts +1 -0
  107. package/dist/util.js +15 -7
  108. package/dist/util.js.map +1 -1
  109. package/dist/version.d.ts +1 -1
  110. package/dist/version.js +1 -1
  111. package/package.json +6 -4
  112. package/src/DialogQueue.ts +47 -0
  113. package/src/components/BoxTrackBlock.tsx +3 -1
  114. package/src/components/Header.tsx +13 -20
  115. package/src/components/HeaderInfoArea.tsx +21 -0
  116. package/src/components/ImportForm/ImportFormExamples.tsx +133 -0
  117. package/src/components/ImportForm/index.tsx +63 -0
  118. package/src/components/ImportForm/util.ts +20 -0
  119. package/src/components/MSAPanel/Loading.tsx +16 -0
  120. package/src/components/MSAPanel/MSABlock.tsx +81 -0
  121. package/src/components/{MSACanvas.tsx → MSAPanel/MSACanvas.tsx} +3 -6
  122. package/src/components/MSAPanel/MSAMouseoverCanvas.tsx +44 -0
  123. package/src/components/MSAPanel/index.tsx +13 -0
  124. package/src/components/MSAPanel/renderMSABlock.ts +158 -0
  125. package/src/components/MSAPanel/renderMSAMouseover.ts +51 -0
  126. package/src/components/MSAView.tsx +36 -56
  127. package/src/components/Minimap.tsx +102 -0
  128. package/src/components/TextTrack.tsx +3 -1
  129. package/src/components/Track.tsx +5 -5
  130. package/src/components/{TreeBranchMenu.tsx → TreePanel/TreeBranchMenu.tsx} +1 -1
  131. package/src/components/{TreeCanvas.tsx → TreePanel/TreeCanvas.tsx} +2 -3
  132. package/src/components/TreePanel/TreeCanvasBlock.tsx +195 -0
  133. package/src/components/{TreeMenu.tsx → TreePanel/TreeNodeMenu.tsx} +21 -8
  134. package/src/components/{TreeRuler.tsx → TreePanel/TreeRuler.tsx} +3 -3
  135. package/src/components/{dialogs/TreeNodeInfoDlg.tsx → TreePanel/dialogs/TreeNodeInfoDialog.tsx} +2 -2
  136. package/src/components/TreePanel/index.tsx +16 -0
  137. package/src/components/TreePanel/renderTreeCanvas.ts +254 -0
  138. package/src/components/dialogs/SettingsDialog.tsx +196 -0
  139. package/src/model.ts +414 -211
  140. package/src/parsers/ClustalMSA.ts +1 -1
  141. package/src/parsers/FastaMSA.ts +1 -1
  142. package/src/parsers/StockholmMSA.ts +1 -1
  143. package/src/util.ts +19 -6
  144. package/src/version.ts +1 -1
  145. package/dist/components/ImportForm.js +0 -84
  146. package/dist/components/ImportForm.js.map +0 -1
  147. package/dist/components/MSABlock.js +0 -103
  148. package/dist/components/MSABlock.js.map +0 -1
  149. package/dist/components/MSACanvas.js.map +0 -1
  150. package/dist/components/MSAMouseoverCanvas.js +0 -61
  151. package/dist/components/MSAMouseoverCanvas.js.map +0 -1
  152. package/dist/components/Rubberband.d.ts +0 -8
  153. package/dist/components/Rubberband.js +0 -173
  154. package/dist/components/Rubberband.js.map +0 -1
  155. package/dist/components/Ruler.d.ts +0 -6
  156. package/dist/components/Ruler.js +0 -52
  157. package/dist/components/Ruler.js.map +0 -1
  158. package/dist/components/TreeBranchMenu.js.map +0 -1
  159. package/dist/components/TreeCanvas.js.map +0 -1
  160. package/dist/components/TreeCanvasBlock.js +0 -255
  161. package/dist/components/TreeCanvasBlock.js.map +0 -1
  162. package/dist/components/TreeMenu.js.map +0 -1
  163. package/dist/components/TreeRuler.js +0 -8
  164. package/dist/components/TreeRuler.js.map +0 -1
  165. package/dist/components/data/seq2.js.map +0 -1
  166. package/dist/components/dialogs/AboutDlg.js.map +0 -1
  167. package/dist/components/dialogs/AddTrackDlg.js.map +0 -1
  168. package/dist/components/dialogs/AnnotationDlg.d.ts +0 -11
  169. package/dist/components/dialogs/AnnotationDlg.js +0 -65
  170. package/dist/components/dialogs/AnnotationDlg.js.map +0 -1
  171. package/dist/components/dialogs/MetadataDlg.js.map +0 -1
  172. package/dist/components/dialogs/SettingsDlg.js +0 -48
  173. package/dist/components/dialogs/SettingsDlg.js.map +0 -1
  174. package/dist/components/dialogs/TrackInfoDlg.js.map +0 -1
  175. package/dist/components/dialogs/TracklistDlg.js.map +0 -1
  176. package/dist/components/dialogs/TreeNodeInfoDlg.js.map +0 -1
  177. package/src/components/ImportForm.tsx +0 -192
  178. package/src/components/MSABlock.tsx +0 -164
  179. package/src/components/MSAMouseoverCanvas.tsx +0 -99
  180. package/src/components/Rubberband.tsx +0 -270
  181. package/src/components/Ruler.tsx +0 -123
  182. package/src/components/TreeCanvasBlock.tsx +0 -363
  183. package/src/components/dialogs/AnnotationDlg.tsx +0 -144
  184. package/src/components/dialogs/SettingsDlg.tsx +0 -154
  185. /package/dist/components/{data → ImportForm/data}/seq2.d.ts +0 -0
  186. /package/dist/components/{data → ImportForm/data}/seq2.js +0 -0
  187. /package/dist/components/{TreeBranchMenu.js → TreePanel/TreeBranchMenu.js} +0 -0
  188. /package/dist/components/dialogs/{AboutDlg.d.ts → AboutDialog.d.ts} +0 -0
  189. /package/dist/components/dialogs/{AddTrackDlg.d.ts → AddTrackDialog.d.ts} +0 -0
  190. /package/dist/components/dialogs/{MetadataDlg.d.ts → MetadataDialog.d.ts} +0 -0
  191. /package/dist/components/dialogs/{SettingsDlg.d.ts → SettingsDialog.d.ts} +0 -0
  192. /package/dist/components/dialogs/{TrackInfoDlg.d.ts → TrackInfoDialog.d.ts} +0 -0
  193. /package/dist/components/dialogs/{TracklistDlg.d.ts → TracklistDialog.d.ts} +0 -0
  194. /package/src/components/{data → ImportForm/data}/seq2.ts +0 -0
  195. /package/src/components/dialogs/{AboutDlg.tsx → AboutDialog.tsx} +0 -0
  196. /package/src/components/dialogs/{AddTrackDlg.tsx → AddTrackDialog.tsx} +0 -0
  197. /package/src/components/dialogs/{MetadataDlg.tsx → MetadataDialog.tsx} +0 -0
  198. /package/src/components/dialogs/{TrackInfoDlg.tsx → TrackInfoDialog.tsx} +0 -0
  199. /package/src/components/dialogs/{TracklistDlg.tsx → TracklistDialog.tsx} +0 -0

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