react-msaview 2.0.0 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundle/index.js +35 -33
- package/dist/UniprotTrack.js +6 -5
- package/dist/UniprotTrack.js.map +1 -1
- package/dist/colorSchemes.d.ts +3 -9
- package/dist/colorSchemes.js +4 -4
- package/dist/colorSchemes.js.map +1 -1
- package/dist/components/BoxTrack.d.ts +4 -3
- package/dist/components/BoxTrack.js +6 -137
- package/dist/components/BoxTrack.js.map +1 -1
- package/dist/components/BoxTrackBlock.d.ts +8 -0
- package/dist/components/BoxTrackBlock.js +136 -0
- package/dist/components/BoxTrackBlock.js.map +1 -0
- package/dist/components/Header.d.ts +2 -1
- package/dist/components/Header.js +29 -27
- package/dist/components/Header.js.map +1 -1
- package/dist/components/ImportForm.d.ts +2 -1
- package/dist/components/MSABlock.d.ts +8 -0
- package/dist/components/MSABlock.js +103 -0
- package/dist/components/MSABlock.js.map +1 -0
- package/dist/components/MSACanvas.d.ts +2 -1
- package/dist/components/MSACanvas.js +3 -101
- package/dist/components/MSACanvas.js.map +1 -1
- package/dist/components/MSAMouseoverCanvas.d.ts +6 -0
- package/dist/components/MSAMouseoverCanvas.js +52 -0
- package/dist/components/MSAMouseoverCanvas.js.map +1 -0
- package/dist/components/MSAView.d.ts +2 -1
- package/dist/components/MSAView.js +10 -36
- package/dist/components/MSAView.js.map +1 -1
- package/dist/components/MultiAlignmentSelector.d.ts +6 -0
- package/dist/components/MultiAlignmentSelector.js +13 -0
- package/dist/components/MultiAlignmentSelector.js.map +1 -0
- package/dist/components/ResizeHandles.d.ts +3 -2
- package/dist/components/Rubberband.d.ts +1 -1
- package/dist/components/Rubberband.js +0 -1
- package/dist/components/Rubberband.js.map +1 -1
- package/dist/components/Ruler.d.ts +2 -1
- package/dist/components/Ruler.js +2 -2
- package/dist/components/Ruler.js.map +1 -1
- package/dist/components/TextTrack.d.ts +2 -1
- package/dist/components/Track.d.ts +3 -2
- package/dist/components/Track.js +4 -3
- package/dist/components/Track.js.map +1 -1
- package/dist/components/TreeBranchMenu.d.ts +14 -0
- package/dist/components/TreeBranchMenu.js +26 -0
- package/dist/components/TreeBranchMenu.js.map +1 -0
- package/dist/components/TreeCanvas.d.ts +2 -1
- package/dist/components/TreeCanvas.js +2 -320
- package/dist/components/TreeCanvas.js.map +1 -1
- package/dist/components/TreeCanvasBlock.d.ts +7 -0
- package/dist/components/TreeCanvasBlock.js +252 -0
- package/dist/components/TreeCanvasBlock.js.map +1 -0
- package/dist/components/TreeMenu.d.ts +12 -0
- package/dist/components/TreeMenu.js +56 -0
- package/dist/components/TreeMenu.js.map +1 -0
- package/dist/components/TreeRuler.d.ts +2 -1
- package/dist/components/VerticalGuide.d.ts +2 -1
- package/dist/components/ZoomControls.d.ts +6 -0
- package/dist/components/ZoomControls.js +58 -0
- package/dist/components/ZoomControls.js.map +1 -0
- package/dist/components/dialogs/AboutDlg.d.ts +4 -0
- package/dist/components/{AboutDlg.js → dialogs/AboutDlg.js} +3 -3
- package/dist/components/dialogs/AboutDlg.js.map +1 -0
- package/dist/components/{AddTrackDlg.d.ts → dialogs/AddTrackDlg.d.ts} +3 -2
- package/dist/components/dialogs/AddTrackDlg.js.map +1 -0
- package/dist/components/{AnnotationDlg.d.ts → dialogs/AnnotationDlg.d.ts} +3 -2
- package/dist/components/dialogs/AnnotationDlg.js.map +1 -0
- package/dist/components/dialogs/DetailsDlg.d.ts +7 -0
- package/dist/components/{DetailsDlg.js → dialogs/DetailsDlg.js} +3 -2
- package/dist/components/dialogs/DetailsDlg.js.map +1 -0
- package/dist/components/{MoreInfoDlg.d.ts → dialogs/MoreInfoDlg.d.ts} +2 -1
- package/dist/components/dialogs/MoreInfoDlg.js.map +1 -0
- package/dist/components/dialogs/SettingsDlg.d.ts +7 -0
- package/dist/components/{SettingsDlg.js → dialogs/SettingsDlg.js} +4 -3
- package/dist/components/dialogs/SettingsDlg.js.map +1 -0
- package/dist/components/{TrackInfoDlg.d.ts → dialogs/TrackInfoDlg.d.ts} +2 -1
- package/dist/components/dialogs/TrackInfoDlg.js.map +1 -0
- package/dist/components/dialogs/TracklistDlg.d.ts +7 -0
- package/dist/components/{TracklistDlg.js → dialogs/TracklistDlg.js} +2 -2
- package/dist/components/dialogs/TracklistDlg.js.map +1 -0
- package/dist/components/util.js +0 -1
- package/dist/components/util.js.map +1 -1
- package/dist/model.d.ts +36 -39
- package/dist/model.js +25 -22
- package/dist/model.js.map +1 -1
- package/dist/parseNewick.js +2 -2
- package/dist/parseNewick.js.map +1 -1
- package/dist/parsers/FastaMSA.d.ts +1 -3
- package/dist/parsers/FastaMSA.js +2 -2
- package/dist/parsers/FastaMSA.js.map +1 -1
- package/dist/parsers/StockholmMSA.d.ts +3 -5
- package/dist/parsers/StockholmMSA.js +3 -3
- package/dist/parsers/StockholmMSA.js.map +1 -1
- package/dist/util.d.ts +5 -7
- package/dist/util.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/version.js.map +1 -1
- package/package.json +9 -9
- package/src/UniprotTrack.ts +6 -7
- package/src/colorSchemes.ts +7 -7
- package/src/components/BoxTrack.tsx +6 -198
- package/src/components/BoxTrackBlock.tsx +198 -0
- package/src/components/Header.tsx +49 -60
- package/src/components/MSABlock.tsx +164 -0
- package/src/components/MSACanvas.tsx +3 -158
- package/src/components/MSAMouseoverCanvas.tsx +87 -0
- package/src/components/MSAView.tsx +19 -63
- package/src/components/MultiAlignmentSelector.tsx +33 -0
- package/src/components/Rubberband.tsx +0 -1
- package/src/components/Ruler.tsx +2 -1
- package/src/components/Track.tsx +9 -6
- package/src/components/TreeBranchMenu.tsx +67 -0
- package/src/components/TreeCanvas.tsx +2 -507
- package/src/components/TreeCanvasBlock.tsx +359 -0
- package/src/components/TreeMenu.tsx +105 -0
- package/src/components/ZoomControls.tsx +78 -0
- package/src/components/{AboutDlg.tsx → dialogs/AboutDlg.tsx} +3 -9
- package/src/components/{AddTrackDlg.tsx → dialogs/AddTrackDlg.tsx} +1 -1
- package/src/components/{AnnotationDlg.tsx → dialogs/AnnotationDlg.tsx} +2 -2
- package/src/components/{DetailsDlg.tsx → dialogs/DetailsDlg.tsx} +5 -5
- package/src/components/{SettingsDlg.tsx → dialogs/SettingsDlg.tsx} +6 -6
- package/src/components/{TracklistDlg.tsx → dialogs/TracklistDlg.tsx} +2 -4
- package/src/components/util.ts +0 -1
- package/src/declare.d.ts +0 -1
- package/src/model.ts +32 -29
- package/src/parseNewick.ts +2 -3
- package/src/parsers/FastaMSA.ts +3 -3
- package/src/parsers/StockholmMSA.ts +5 -5
- package/src/util.ts +3 -3
- package/src/version.ts +1 -1
- package/dist/components/AboutDlg.d.ts +0 -4
- package/dist/components/AboutDlg.js.map +0 -1
- package/dist/components/AddTrackDlg.js.map +0 -1
- package/dist/components/AnnotationDlg.js.map +0 -1
- package/dist/components/DetailsDlg.d.ts +0 -7
- package/dist/components/DetailsDlg.js.map +0 -1
- package/dist/components/MoreInfoDlg.js.map +0 -1
- package/dist/components/SettingsDlg.d.ts +0 -7
- package/dist/components/SettingsDlg.js.map +0 -1
- package/dist/components/TrackInfoDlg.js.map +0 -1
- package/dist/components/TracklistDlg.d.ts +0 -7
- package/dist/components/TracklistDlg.js.map +0 -1
- /package/dist/components/{AddTrackDlg.js → dialogs/AddTrackDlg.js} +0 -0
- /package/dist/components/{AnnotationDlg.js → dialogs/AnnotationDlg.js} +0 -0
- /package/dist/components/{MoreInfoDlg.js → dialogs/MoreInfoDlg.js} +0 -0
- /package/dist/components/{TrackInfoDlg.js → dialogs/TrackInfoDlg.js} +0 -0
- /package/src/components/{MoreInfoDlg.tsx → dialogs/MoreInfoDlg.tsx} +0 -0
- /package/src/components/{TrackInfoDlg.tsx → dialogs/TrackInfoDlg.tsx} +0 -0
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import React, { useEffect, useRef, useState } from 'react';
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import { observer } from 'mobx-react';
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import RBush from 'rbush';
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import TreeMenu from './TreeMenu';
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import TreeBranchMenu from './TreeBranchMenu';
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const extendBounds = 5;
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const radius = 3.5;
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const d = radius * 2;
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const padding = 600;
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const TreeCanvasBlock = observer(function ({ model, offsetY, }) {
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const ref = useRef(null);
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const clickMap = useRef(new RBush());
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const mouseoverRef = useRef(null);
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const [branchMenu, setBranchMenu] = useState();
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const [toggleNodeMenu, setToggleNodeMenu] = useState();
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const [hoverElt, setHoverElt] = useState();
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const { hierarchy, rowHeight, scrollY, treeWidth, showBranchLen, collapsed, margin, labelsAlignRight, noTree, blockSize, drawNodeBubbles, drawTree, treeAreaWidth, structures, highResScaleFactor, } = model;
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useEffect(() => {
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clickMap.current.clear();
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if (!ref.current) {
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return;
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}
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const ctx = ref.current.getContext('2d');
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if (!ctx) {
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return;
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}
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ctx.resetTransform();
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ctx.scale(highResScaleFactor, highResScaleFactor);
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ctx.clearRect(0, 0, treeWidth + padding, blockSize);
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ctx.translate(margin.left, -offsetY);
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const font = ctx.font;
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ctx.font = font.replace(/\d+px/, `${Math.max(8, rowHeight - 8)}px`);
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if (!noTree && drawTree) {
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for (const { source, target } of hierarchy.links()) {
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const y = showBranchLen ? 'len' : 'y';
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// @ts-expect-error
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const { x: sy, [y]: sx } = source;
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// @ts-expect-error
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const { x: ty, [y]: tx } = target;
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const y1 = Math.min(sy, ty);
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const y2 = Math.max(sy, ty);
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// 1d line intersection to check if line crosses block at all, this is
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// an optimization that allows us to skip drawing most tree links
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// outside the block
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if (offsetY + blockSize >= y1 && y2 >= offsetY) {
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ctx.beginPath();
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ctx.moveTo(sx, sy);
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ctx.lineTo(sx, ty);
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ctx.lineTo(tx, ty);
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ctx.stroke();
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}
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}
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if (drawNodeBubbles) {
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for (const node of hierarchy.descendants()) {
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const val = showBranchLen ? 'len' : 'y';
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const {
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// @ts-expect-error
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x: y,
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// @ts-expect-error
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[val]: x, data, } = node;
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const { id = '', name = '' } = data;
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if (y > offsetY - extendBounds &&
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y < offsetY + blockSize + extendBounds) {
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ctx.strokeStyle = 'black';
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ctx.fillStyle = collapsed.includes(id) ? 'black' : 'white';
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ctx.beginPath();
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ctx.arc(x, y, radius, 0, 2 * Math.PI);
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ctx.fill();
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ctx.stroke();
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clickMap.current.insert({
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minX: x - radius,
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maxX: x - radius + d,
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minY: y - radius,
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maxY: y - radius + d,
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branch: true,
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id,
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name,
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});
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}
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}
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}
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}
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if (rowHeight >= 5) {
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if (labelsAlignRight) {
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ctx.textAlign = 'right';
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ctx.setLineDash([1, 3]);
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}
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else {
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ctx.textAlign = 'start';
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}
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for (const node of hierarchy.leaves()) {
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const {
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// @ts-expect-error
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x: y,
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// @ts-expect-error
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y: x, data: { name, id },
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// @ts-expect-error
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len, } = node;
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if (y > offsetY - extendBounds &&
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y < offsetY + blockSize + extendBounds) {
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// note: +rowHeight/4 matches with -rowHeight/4 in msa
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const yp = y + rowHeight / 4;
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const xp = showBranchLen ? len : x;
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const { width } = ctx.measureText(name);
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const height = ctx.measureText('M').width; // use an 'em' for height
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const hasStructure = structures[name];
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ctx.fillStyle = hasStructure ? 'blue' : 'black';
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if (!drawTree && !labelsAlignRight) {
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ctx.fillText(name, 0, yp);
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clickMap.current.insert({
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minX: 0,
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maxX: width,
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minY: yp - height,
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maxY: yp,
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name,
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id,
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});
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}
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else if (labelsAlignRight) {
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const smallPadding = 2;
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const offset = treeAreaWidth - smallPadding - margin.left;
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if (drawTree && !noTree) {
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const { width } = ctx.measureText(name);
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ctx.moveTo(xp + radius + 2, y);
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ctx.lineTo(offset - smallPadding - width, y);
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ctx.stroke();
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}
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ctx.fillText(name, offset, yp);
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clickMap.current.insert({
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minX: treeAreaWidth - margin.left - width,
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maxX: treeAreaWidth - margin.left,
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minY: yp - height,
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maxY: yp,
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name,
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id,
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});
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}
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else {
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ctx.fillText(name, xp + d, yp);
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clickMap.current.insert({
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minX: xp + d,
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maxX: xp + d + width,
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minY: yp - height,
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maxY: yp,
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name,
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id,
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});
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}
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}
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}
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ctx.setLineDash([]);
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}
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}, [
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collapsed,
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rowHeight,
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margin.left,
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hierarchy,
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offsetY,
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treeWidth,
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showBranchLen,
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noTree,
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blockSize,
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drawNodeBubbles,
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drawTree,
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labelsAlignRight,
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treeAreaWidth,
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structures,
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highResScaleFactor,
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]);
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useEffect(() => {
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const canvas = mouseoverRef.current;
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if (!canvas) {
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return;
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}
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const ctx = canvas.getContext('2d');
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if (!ctx) {
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return;
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}
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ctx.resetTransform();
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ctx.clearRect(0, 0, treeWidth + padding, blockSize);
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ctx.translate(margin.left, -offsetY);
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if (hoverElt) {
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const { minX, maxX, minY, maxY } = hoverElt;
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ctx.fillStyle = 'rgba(0,0,0,0.1)';
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ctx.fillRect(minX, minY, maxX - minX, maxY - minY);
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}
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}, [hoverElt, margin.left, offsetY, blockSize, treeWidth]);
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function hoverBranchClickMap(event) {
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const x = event.nativeEvent.offsetX - margin.left;
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const y = event.nativeEvent.offsetY;
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const [entry] = clickMap.current.search({
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minX: x,
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maxX: x + 1,
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minY: y + offsetY,
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maxY: y + 1 + offsetY,
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});
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return entry && entry.branch
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? { ...entry, x: event.clientX, y: event.clientY }
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: undefined;
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}
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function hoverNameClickMap(event) {
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const x = event.nativeEvent.offsetX - margin.left;
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203
|
+
const y = event.nativeEvent.offsetY;
|
|
204
|
+
const [entry] = clickMap.current.search({
|
|
205
|
+
minX: x,
|
|
206
|
+
maxX: x + 1,
|
|
207
|
+
minY: y + offsetY,
|
|
208
|
+
maxY: y + 1 + offsetY,
|
|
209
|
+
});
|
|
210
|
+
return entry && !entry.branch
|
|
211
|
+
? { ...entry, x: event.clientX, y: event.clientY }
|
|
212
|
+
: undefined;
|
|
213
|
+
}
|
|
214
|
+
return (React.createElement(React.Fragment, null,
|
|
215
|
+
(branchMenu === null || branchMenu === void 0 ? void 0 : branchMenu.id) ? (React.createElement(TreeBranchMenu, { node: branchMenu, model: model, onClose: () => setBranchMenu(undefined) })) : null,
|
|
216
|
+
(toggleNodeMenu === null || toggleNodeMenu === void 0 ? void 0 : toggleNodeMenu.id) ? (React.createElement(TreeMenu, { node: toggleNodeMenu, model: model, onClose: () => setToggleNodeMenu(undefined) })) : null,
|
|
217
|
+
React.createElement("canvas", { width: (treeWidth + padding) * highResScaleFactor, height: blockSize * highResScaleFactor, style: {
|
|
218
|
+
width: treeWidth + padding,
|
|
219
|
+
height: blockSize,
|
|
220
|
+
top: scrollY + offsetY,
|
|
221
|
+
left: 0,
|
|
222
|
+
position: 'absolute',
|
|
223
|
+
}, onMouseMove: event => {
|
|
224
|
+
if (!ref.current) {
|
|
225
|
+
return;
|
|
226
|
+
}
|
|
227
|
+
const ret = hoverNameClickMap(event) || hoverBranchClickMap(event);
|
|
228
|
+
ref.current.style.cursor = ret ? 'pointer' : 'default';
|
|
229
|
+
setHoverElt(hoverNameClickMap(event));
|
|
230
|
+
}, onClick: event => {
|
|
231
|
+
const { clientX: x, clientY: y } = event;
|
|
232
|
+
const data = hoverBranchClickMap(event);
|
|
233
|
+
if (data === null || data === void 0 ? void 0 : data.id) {
|
|
234
|
+
setBranchMenu({ ...data, x, y });
|
|
235
|
+
}
|
|
236
|
+
const data2 = hoverNameClickMap(event);
|
|
237
|
+
if (data2 === null || data2 === void 0 ? void 0 : data2.id) {
|
|
238
|
+
setToggleNodeMenu({ ...data2, x, y });
|
|
239
|
+
}
|
|
240
|
+
}, ref: ref }),
|
|
241
|
+
React.createElement("canvas", { style: {
|
|
242
|
+
width: treeWidth + padding,
|
|
243
|
+
height: blockSize,
|
|
244
|
+
top: scrollY + offsetY,
|
|
245
|
+
left: 0,
|
|
246
|
+
position: 'absolute',
|
|
247
|
+
pointerEvents: 'none',
|
|
248
|
+
zIndex: 100,
|
|
249
|
+
}, width: treeWidth + padding, height: blockSize, ref: mouseoverRef })));
|
|
250
|
+
});
|
|
251
|
+
export default TreeCanvasBlock;
|
|
252
|
+
//# sourceMappingURL=TreeCanvasBlock.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"TreeCanvasBlock.js","sourceRoot":"","sources":["../../src/components/TreeCanvasBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,KAAK,MAAM,OAAO,CAAA;AAIzB,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAE7C,MAAM,YAAY,GAAG,CAAC,CAAA;AACtB,MAAM,MAAM,GAAG,GAAG,CAAA;AAClB,MAAM,CAAC,GAAG,MAAM,GAAG,CAAC,CAAA;AAEpB,MAAM,OAAO,GAAG,GAAG,CAAA;AAmBnB,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,MAAM,QAAQ,GAAG,MAAM,CAAC,IAAI,KAAK,EAAc,CAAC,CAAA;IAChD,MAAM,YAAY,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IACpD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,EAAe,CAAA;IAC3D,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,EAAe,CAAA;IACnE,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAc,CAAA;IAEtD,MAAM,EACJ,SAAS,EACT,SAAS,EACT,OAAO,EACP,SAAS,EACT,aAAa,EACb,SAAS,EACT,MAAM,EACN,gBAAgB,EAChB,MAAM,EACN,SAAS,EACT,eAAe,EACf,QAAQ,EACR,aAAa,EACb,UAAU,EACV,kBAAkB,GACnB,GAAG,KAAK,CAAA;IAET,SAAS,CAAC,GAAG,EAAE;QACb,QAAQ,CAAC,OAAO,CAAC,KAAK,EAAE,CAAA;QAExB,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE;YAChB,OAAM;SACP;QACD,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;QACxC,IAAI,CAAC,GAAG,EAAE;YACR,OAAM;SACP;QAED,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,KAAK,CAAC,kBAAkB,EAAE,kBAAkB,CAAC,CAAA;QACjD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,GAAG,OAAO,EAAE,SAAS,CAAC,CAAA;QACnD,GAAG,CAAC,SAAS,CAAC,MAAM,CAAC,IAAI,EAAE,CAAC,OAAO,CAAC,CAAA;QAEpC,MAAM,IAAI,GAAG,GAAG,CAAC,IAAI,CAAA;QACrB,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;QAEnE,IAAI,CAAC,MAAM,IAAI,QAAQ,EAAE;YACvB,KAAK,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,SAAS,CAAC,KAAK,EAAE,EAAE;gBAClD,MAAM,CAAC,GAAG,aAAa,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,CAAA;gBACrC,mBAAmB;gBACnB,MAAM,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,MAAM,CAAA;gBACjC,mBAAmB;gBACnB,MAAM,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,GAAG,MAAM,CAAA;gBAEjC,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;gBAC3B,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;gBAC3B,sEAAsE;gBACtE,iEAAiE;gBACjE,oBAAoB;gBACpB,IAAI,OAAO,GAAG,SAAS,IAAI,EAAE,IAAI,EAAE,IAAI,OAAO,EAAE;oBAC9C,GAAG,CAAC,SAAS,EAAE,CAAA;oBACf,GAAG,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;oBAClB,GAAG,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;oBAClB,GAAG,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,CAAC,CAAA;oBAClB,GAAG,CAAC,MAAM,EAAE,CAAA;iBACb;aACF;YAED,IAAI,eAAe,EAAE;gBACnB,KAAK,MAAM,IAAI,IAAI,SAAS,CAAC,WAAW,EAAE,EAAE;oBAC1C,MAAM,GAAG,GAAG,aAAa,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,CAAA;oBACvC,MAAM;oBACJ,mBAAmB;oBACnB,CAAC,EAAE,CAAC;oBACJ,mBAAmB;oBACnB,CAAC,GAAG,CAAC,EAAE,CAAC,EACR,IAAI,GACL,GAAG,IAAI,CAAA;oBACR,MAAM,EAAE,EAAE,GAAG,EAAE,EAAE,IAAI,GAAG,EAAE,EAAE,GAAG,IAAI,CAAA;oBAEnC,IACE,CAAC,GAAG,OAAO,GAAG,YAAY;wBAC1B,CAAC,GAAG,OAAO,GAAG,SAAS,GAAG,YAAY,EACtC;wBACA,GAAG,CAAC,WAAW,GAAG,OAAO,CAAA;wBACzB,GAAG,CAAC,SAAS,GAAG,SAAS,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,OAAO,CAAA;wBAC1D,GAAG,CAAC,SAAS,EAAE,CAAA;wBACf,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,EAAE,CAAC,CAAA;wBACrC,GAAG,CAAC,IAAI,EAAE,CAAA;wBACV,GAAG,CAAC,MAAM,EAAE,CAAA;wBAEZ,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC;4BACtB,IAAI,EAAE,CAAC,GAAG,MAAM;4BAChB,IAAI,EAAE,CAAC,GAAG,MAAM,GAAG,CAAC;4BACpB,IAAI,EAAE,CAAC,GAAG,MAAM;4BAChB,IAAI,EAAE,CAAC,GAAG,MAAM,GAAG,CAAC;4BACpB,MAAM,EAAE,IAAI;4BACZ,EAAE;4BACF,IAAI;yBACL,CAAC,CAAA;qBACH;iBACF;aACF;SACF;QAED,IAAI,SAAS,IAAI,CAAC,EAAE;YAClB,IAAI,gBAAgB,EAAE;gBACpB,GAAG,CAAC,SAAS,GAAG,OAAO,CAAA;gBACvB,GAAG,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;aACxB;iBAAM;gBACL,GAAG,CAAC,SAAS,GAAG,OAAO,CAAA;aACxB;YACD,KAAK,MAAM,IAAI,IAAI,SAAS,CAAC,MAAM,EAAE,EAAE;gBACrC,MAAM;gBACJ,mBAAmB;gBACnB,CAAC,EAAE,CAAC;gBACJ,mBAAmB;gBACnB,CAAC,EAAE,CAAC,EACJ,IAAI,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE;gBAClB,mBAAmB;gBACnB,GAAG,GACJ,GAAG,IAAI,CAAA;gBAER,IACE,CAAC,GAAG,OAAO,GAAG,YAAY;oBAC1B,CAAC,GAAG,OAAO,GAAG,SAAS,GAAG,YAAY,EACtC;oBACA,sDAAsD;oBACtD,MAAM,EAAE,GAAG,CAAC,GAAG,SAAS,GAAG,CAAC,CAAA;oBAC5B,MAAM,EAAE,GAAG,aAAa,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAA;oBAElC,MAAM,EAAE,KAAK,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;oBACvC,MAAM,MAAM,GAAG,GAAG,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,KAAK,CAAA,CAAC,yBAAyB;oBAEnE,MAAM,YAAY,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;oBACrC,GAAG,CAAC,SAAS,GAAG,YAAY,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,OAAO,CAAA;oBAE/C,IAAI,CAAC,QAAQ,IAAI,CAAC,gBAAgB,EAAE;wBAClC,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,EAAE,EAAE,CAAC,CAAA;wBACzB,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC;4BACtB,IAAI,EAAE,CAAC;4BACP,IAAI,EAAE,KAAK;4BACX,IAAI,EAAE,EAAE,GAAG,MAAM;4BACjB,IAAI,EAAE,EAAE;4BACR,IAAI;4BACJ,EAAE;yBACH,CAAC,CAAA;qBACH;yBAAM,IAAI,gBAAgB,EAAE;wBAC3B,MAAM,YAAY,GAAG,CAAC,CAAA;wBACtB,MAAM,MAAM,GAAG,aAAa,GAAG,YAAY,GAAG,MAAM,CAAC,IAAI,CAAA;wBACzD,IAAI,QAAQ,IAAI,CAAC,MAAM,EAAE;4BACvB,MAAM,EAAE,KAAK,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;4BACvC,GAAG,CAAC,MAAM,CAAC,EAAE,GAAG,MAAM,GAAG,CAAC,EA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|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import { MsaViewModel } from '../model';
|
|
3
|
+
declare const TreeMenu: ({ node, onClose, model, }: {
|
|
4
|
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node: {
|
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+
x: number;
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y: number;
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7
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+
name: string;
|
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};
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+
model: MsaViewModel;
|
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onClose: () => void;
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}) => React.JSX.Element;
|
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export default TreeMenu;
|
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@@ -0,0 +1,56 @@
|
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1
|
+
import React, { lazy } from 'react';
|
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2
|
+
import { Menu, MenuItem } from '@mui/material';
|
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3
|
+
import { observer } from 'mobx-react';
|
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4
|
+
const MoreInfoDlg = lazy(() => import('./dialogs/MoreInfoDlg'));
|
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|
+
const TreeMenu = observer(function ({ node, onClose, model, }) {
|
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|
+
var _a, _b;
|
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7
|
+
const { structures } = model;
|
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8
|
+
const nodeDetails = node ? model.getRowData(node.name) : undefined;
|
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9
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return (React.createElement(React.Fragment, null,
|
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+
React.createElement(Menu, { anchorReference: "anchorPosition", anchorPosition: {
|
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+
top: node.y,
|
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left: node.x,
|
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}, transitionDuration: 0, keepMounted: true, open: Boolean(node), onClose: onClose },
|
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React.createElement(MenuItem, { dense: true, disabled: true }, node.name),
|
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|
+
React.createElement(MenuItem, { dense: true, onClick: () => {
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model.setDialogComponent(MoreInfoDlg, {
|
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info: model.getRowData(node.name),
|
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});
|
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onClose();
|
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|
+
} }, "More info..."), (_a = structures[node.name]) === null || _a === void 0 ? void 0 :
|
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|
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_a.map(entry => {
|
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|
+
return !model.selectedStructures.some(n => n.id === node.name) ? (React.createElement(MenuItem, { key: JSON.stringify(entry), dense: true, onClick: () => {
|
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model.addStructureToSelection({
|
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|
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structure: entry,
|
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id: node.name,
|
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26
|
+
});
|
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|
+
onClose();
|
|
28
|
+
} },
|
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|
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"Add PDB to selection (",
|
|
30
|
+
entry.pdb,
|
|
31
|
+
")")) : (React.createElement(MenuItem, { key: JSON.stringify(entry), dense: true, onClick: () => {
|
|
32
|
+
model.removeStructureFromSelection({
|
|
33
|
+
structure: entry,
|
|
34
|
+
id: node.name,
|
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35
|
+
});
|
|
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|
+
onClose();
|
|
37
|
+
} },
|
|
38
|
+
"Remove PDB from selection (",
|
|
39
|
+
entry.pdb,
|
|
40
|
+
")"));
|
|
41
|
+
}), // @ts-expect-error
|
|
42
|
+
(_b = nodeDetails === null || nodeDetails === void 0 ? void 0 : nodeDetails.data.accession) === null || _b === void 0 ? void 0 :
|
|
43
|
+
_b.map(accession => (React.createElement(MenuItem, { dense: true, key: accession, onClick: () => {
|
|
44
|
+
model.addUniprotTrack({
|
|
45
|
+
// @ts-expect-error
|
|
46
|
+
name: nodeDetails === null || nodeDetails === void 0 ? void 0 : nodeDetails.data.name,
|
|
47
|
+
accession,
|
|
48
|
+
});
|
|
49
|
+
onClose();
|
|
50
|
+
} },
|
|
51
|
+
"Open UniProt track (",
|
|
52
|
+
accession,
|
|
53
|
+
")"))))));
|
|
54
|
+
});
|
|
55
|
+
export default TreeMenu;
|
|
56
|
+
//# sourceMappingURL=TreeMenu.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"TreeMenu.js","sourceRoot":"","sources":["../../src/components/TreeMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AACnC,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAKrC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,uBAAuB,CAAC,CAAC,CAAA;AAE/D,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,EAClC,IAAI,EACJ,OAAO,EACP,KAAK,GAKN;;IACC,MAAM,EAAE,UAAU,EAAE,GAAG,KAAK,CAAA;IAC5B,MAAM,WAAW,GAAG,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IAElE,OAAO,CACL;QACE,oBAAC,IAAI,IACH,eAAe,EAAC,gBAAgB,EAChC,cAAc,EAAE;gBACd,GAAG,EAAE,IAAI,CAAC,CAAC;gBACX,IAAI,EAAE,IAAI,CAAC,CAAC;aACb,EACD,kBAAkB,EAAE,CAAC,EACrB,WAAW,QACX,IAAI,EAAE,OAAO,CAAC,IAAI,CAAC,EACnB,OAAO,EAAE,OAAO;YAEhB,oBAAC,QAAQ,IAAC,KAAK,QAAC,QAAQ,UACrB,IAAI,CAAC,IAAI,CACD;YAEX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE;wBACpC,IAAI,EAAE,KAAK,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC;qBAClC,CAAC,CAAA;oBACF,OAAO,EAAE,CAAA;gBACX,CAAC,mBAGQ,EAEV,MAAA,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC;eAAE,GAAG,CAAC,KAAK,CAAC,EAAE;gBAClC,OAAO,CAAC,KAAK,CAAC,kBAAkB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAC/D,oBAAC,QAAQ,IACP,GAAG,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,EAC1B,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,uBAAuB,CAAC;4BAC5B,SAAS,EAAE,KAAK;4BAChB,EAAE,EAAE,IAAI,CAAC,IAAI;yBACd,CAAC,CAAA;wBACF,OAAO,EAAE,CAAA;oBACX,CAAC;;oBAEsB,KAAK,CAAC,GAAG;wBACvB,CACZ,CAAC,CAAC,CAAC,CACF,oBAAC,QAAQ,IACP,GAAG,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,EAC1B,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,4BAA4B,CAAC;4BACjC,SAAS,EAAE,KAAK;4BAChB,EAAE,EAAE,IAAI,CAAC,IAAI;yBACd,CAAC,CAAA;wBACF,OAAO,EAAE,CAAA;oBACX,CAAC;;oBAE2B,KAAK,CAAC,GAAG;wBAC5B,CACZ,CAAA;YACH,CAAC,CAAC,EAED,mBAAmB;QACpB,MAAA,WAAW,aAAX,WAAW,uBAAX,WAAW,CAAE,IAAI,CAAC,SAAS;eAAE,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC,CAC5C,oBAAC,QAAQ,IACP,KAAK,QACL,GAAG,EAAE,SAAS,EACd,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,eAAe,CAAC;wBACpB,mBAAmB;wBACnB,IAAI,EAAE,WAAW,aAAX,WAAW,uBAAX,WAAW,CAAE,IAAI,CAAC,IAAI;wBAC5B,SAAS;qBACV,CAAC,CAAA;oBACF,OAAO,EAAE,CAAA;gBACX,CAAC;;gBAEoB,SAAS;oBACrB,CACZ,CAAC,CACG,CACN,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}
|
|
@@ -0,0 +1,58 @@
|
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import { IconButton } from '@mui/material';
|
|
3
|
+
import { observer } from 'mobx-react';
|
|
4
|
+
import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
|
|
5
|
+
// icons
|
|
6
|
+
import MoreVert from '@mui/icons-material/MoreVert';
|
|
7
|
+
import ZoomIn from '@mui/icons-material/ZoomIn';
|
|
8
|
+
import ZoomOut from '@mui/icons-material/ZoomOut';
|
|
9
|
+
const ZoomControls = observer(function ZoomControls({ model, }) {
|
|
10
|
+
const { colWidth, rowHeight } = model;
|
|
11
|
+
return (React.createElement(React.Fragment, null,
|
|
12
|
+
React.createElement(IconButton, { onClick: () => {
|
|
13
|
+
model.setColWidth(Math.ceil(colWidth * 1.5));
|
|
14
|
+
model.setRowHeight(Math.ceil(rowHeight * 1.5));
|
|
15
|
+
} },
|
|
16
|
+
React.createElement(ZoomIn, null)),
|
|
17
|
+
React.createElement(IconButton, { onClick: () => {
|
|
18
|
+
model.setColWidth(Math.max(1, Math.floor(colWidth * 0.75)));
|
|
19
|
+
model.setRowHeight(Math.max(1.5, Math.floor(rowHeight * 0.75)));
|
|
20
|
+
} },
|
|
21
|
+
React.createElement(ZoomOut, null)),
|
|
22
|
+
React.createElement(CascadingMenuButton, { menuItems: [
|
|
23
|
+
{
|
|
24
|
+
label: 'Decrease row height',
|
|
25
|
+
onClick: () => {
|
|
26
|
+
model.setRowHeight(Math.max(1.5, rowHeight * 0.75));
|
|
27
|
+
},
|
|
28
|
+
},
|
|
29
|
+
{
|
|
30
|
+
label: 'Increase row height',
|
|
31
|
+
onClick: () => {
|
|
32
|
+
model.setRowHeight(rowHeight * 1.5);
|
|
33
|
+
},
|
|
34
|
+
},
|
|
35
|
+
{
|
|
36
|
+
label: 'Decrease col width',
|
|
37
|
+
onClick: () => {
|
|
38
|
+
model.setColWidth(Math.max(1, colWidth * 0.75));
|
|
39
|
+
},
|
|
40
|
+
},
|
|
41
|
+
{
|
|
42
|
+
label: 'Increase col width',
|
|
43
|
+
onClick: () => {
|
|
44
|
+
model.setColWidth(colWidth * 1.5);
|
|
45
|
+
},
|
|
46
|
+
},
|
|
47
|
+
{
|
|
48
|
+
label: 'Reset zoom to default',
|
|
49
|
+
onClick: () => {
|
|
50
|
+
model.setColWidth(16);
|
|
51
|
+
model.setRowHeight(20);
|
|
52
|
+
},
|
|
53
|
+
},
|
|
54
|
+
] },
|
|
55
|
+
React.createElement(MoreVert, null))));
|
|
56
|
+
});
|
|
57
|
+
export default ZoomControls;
|
|
58
|
+
//# sourceMappingURL=ZoomControls.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../src/components/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AAKtE,QAAQ;AACR,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AAEjD,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IACrC,OAAO,CACL;QACE,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,GAAG,GAAG,CAAC,CAAC,CAAA;gBAC5C,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,GAAG,GAAG,CAAC,CAAC,CAAA;YAChD,CAAC;YAED,oBAAC,MAAM,OAAG,CACC;QACb,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC3D,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,IAAI,CAAC,KAAK,CAAC,SAAS,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;YACjE,CAAC;YAED,oBAAC,OAAO,OAAG,CACA;QACb,oBAAC,mBAAmB,IAClB,SAAS,EAAE;gBACT;oBACE,KAAK,EAAE,qBAAqB;oBAC5B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,SAAS,GAAG,IAAI,CAAC,CAAC,CAAA;oBACrD,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,qBAAqB;oBAC5B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,YAAY,CAAC,SAAS,GAAG,GAAG,CAAC,CAAA;oBACrC,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,oBAAoB;oBAC3B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,QAAQ,GAAG,IAAI,CAAC,CAAC,CAAA;oBACjD,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,oBAAoB;oBAC3B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,WAAW,CAAC,QAAQ,GAAG,GAAG,CAAC,CAAA;oBACnC,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,uBAAuB;oBAC9B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;wBACrB,KAAK,CAAC,YAAY,CAAC,EAAE,CAAC,CAAA;oBACxB,CAAC;iBACF;aACF;YAED,oBAAC,QAAQ,OAAG,CACQ,CACrB,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,YAAY,CAAA"}
|
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
2
|
import { Dialog } from '@jbrowse/core/ui';
|
|
3
3
|
import { DialogContent, Typography, Link } from '@mui/material';
|
|
4
|
-
import { version } from '
|
|
5
|
-
export default function AboutDialog({ onClose
|
|
6
|
-
return (React.createElement(Dialog, { onClose: () => onClose(), open:
|
|
4
|
+
import { version } from '../../version';
|
|
5
|
+
export default function AboutDialog({ onClose }) {
|
|
6
|
+
return (React.createElement(Dialog, { onClose: () => onClose(), open: true, title: "About this plugin" },
|
|
7
7
|
React.createElement(DialogContent, null,
|
|
8
8
|
React.createElement(Typography, null,
|
|
9
9
|
"MSAView ",
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AboutDlg.js","sourceRoot":"","sources":["../../../src/components/dialogs/AboutDlg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,aAAa,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,eAAe,CAAA;AAC/D,OAAO,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AAEvC,MAAM,CAAC,OAAO,UAAU,WAAW,CAAC,EAAE,OAAO,EAA2B;IACtE,OAAO,CACL,oBAAC,MAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,EAAE,IAAI,QAAC,KAAK,EAAC,mBAAmB;QAC9D,oBAAC,aAAa;YACZ,oBAAC,UAAU;;gBACA,OAAO;;gBAChB,oBAAC,IAAI,IAAC,IAAI,EAAC,gDAAgD,aAEpD;oBAEI;YAEb;gBACE;oBACE,oBAAC,UAAU;;wBAC0B,GAAG;wBACtC,oBAAC,IAAI,IAAC,IAAI,EAAC,wCAAwC,cAAe;wBAAC,GAAG;;wBAC7B,GAAG;wBAC5C,oBAAC,IAAI,IAAC,IAAI,EAAC,gEAAgE,WAEpE,CACI,CACV;gBACL;oBACE,oBAAC,UAAU;;wBAC+C,GAAG;wBAC3D,oBAAC,IAAI,IAAC,IAAI,EAAC,kDAAkD,WAEtD,CACI,CACV;gBACL;oBACE,oBAAC,UAAU;;wBAEU,GAAG;wBACtB,oBAAC,IAAI,IAAC,IAAI,EAAC,oDAAoD,WAExD,CACI,CACV;gBACL;oBACE,oBAAC,UAAU;;wBACoC,GAAG;wBAChD,oBAAC,IAAI,IAAC,IAAI,EAAC,uDAAuD,WAE3D,CACI,CACV,CACF,CACS,CACT,CACV,CAAA;AACH,CAAC"}
|
|
@@ -1,7 +1,8 @@
|
|
|
1
|
-
import
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import { MsaViewModel } from '../../model';
|
|
2
3
|
declare const _default: ({ model, onClose, open, }: {
|
|
3
4
|
model: MsaViewModel;
|
|
4
5
|
onClose: () => void;
|
|
5
6
|
open: boolean;
|
|
6
|
-
}) => JSX.Element;
|
|
7
|
+
}) => React.JSX.Element;
|
|
7
8
|
export default _default;
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AddTrackDlg.js","sourceRoot":"","sources":["../../../src/components/dialogs/AddTrackDlg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,aAAa,EACb,aAAa,EACb,MAAM,EACN,SAAS,EACT,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAEvD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAGrC,eAAe,QAAQ,CAAC,UAAU,EAChC,KAAK,EACL,OAAO,EACP,IAAI,GAKL;IACC,MAAM,OAAO,GAAG,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACzC,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,EAAgB,CAAA;IAC1D,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAEtD,OAAO,CACL,oBAAC,MAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAC,WAAW;QAC7D,oBAAC,aAAa;YACZ,oBAAC,UAAU,kEAEE;YACb,oBAAC,SAAS,IACR,MAAM,QACN,UAAU,EAAC,qCAAqC,EAChD,KAAK,EAAE,aAAa,EACpB,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;gBACtC,CAAC,IAEA,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE,CAAC,CAC9B,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,MAAM,IAC/C,MAAM,CACE,CACZ,CAAC,CACQ;YACZ,oBAAC,YAAY,IAAC,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,YAAY,GAAI;YAChE,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;wBACzB,IAAI,SAAS,EAAE;4BACb,mEAAmE;4BACnE,KAAK,CAAC,gBAAgB,CAAC,SAAS,CAAC,CAAA;yBAClC;oBACH,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,WAGR;gBACT,oBAAC,MAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,aAGjB,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA"}
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import
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import React from 'react';
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import { MsaViewModel } from '../../model';
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declare const _default: ({ onClose, data, model, }: {
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{"version":3,"file":"AnnotationDlg.js","sourceRoot":"","sources":["../../../src/components/dialogs/AnnotationDlg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AAEzC,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AAKnD,MAAM,kBAAkB,GAAG,CAAC,GAAe,EAAE,EAAE;IAC7C,MAAM,GAAG,GAAG,EAA8B,CAAA;IAC1C,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE;QACzB,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;YACb,GAAG,CAAC,GAAG,CAAC,GAAG,EAAc,CAAA;SAC1B;QACD,GAAG,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;IACpB,CAAC,CAAC,CAAA;IACF,OAAO,GAAG,CAAA;AACZ,CAAC,CAAA;AAED,MAAM,GAAG,GAAG,QAAQ,CAAC,UAAU,EAC7B,IAAI,EACJ,KAAK,EACL,QAAQ,EACR,OAAO,EACP,QAAQ,GAOT;IACC,OAAO,CACL;QACE,oBAAC,UAAU,IAAC,OAAO,EAAE,QAAQ,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE;YAClD,oBAAC,UAAU,OAAG,CACH;QACb,oBAAC,SAAS,IACR,KAAK,EAAE,IAAI,EACX,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC9C,KAAK,EAAC,KAAK,GACX;QACF,oBAAC,SAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC/C,KAAK,EAAC,OAAO,GACb,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CACrB,CAAC,EACC,OAAO,EACP,IAAI,EACJ,KAAK,GAKN,EAAE,EAAE;IACH,MAAM,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IACxB,MAAM,EAAE,IAAI,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,GAAG,IAAI,CAAA;IAClC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,CAAC;QAC/B,CAAC,MAAM,EAAE,EAAE,CAAC;QACZ,CAAC,IAAI,EAAE,EAAE,CAAC;QACV,CAAC,MAAM,EAAE,EAAE,CAAC;KACb,CAAC,CAAA;IACF,OAAO,CACL,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,EACxB,IAAI,QACJ,KAAK,EAAC,8BAA8B;QAEpC,oBAAC,aAAa;YACZ,oBAAC,UAAU;;gBACuC,CAAC;;gBAAI,CAAC;gBAAE,GAAG;gBAC1D,MAAM,CAAC,MAAM;oBACZ,CAAC,CAAC,YAAY,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE;oBACnD,CAAC,CAAC,EAAE,CACK;YACZ,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,CAC/B,oBAAC,GAAG,IACF,GAAG,EAAE,KAAK,EACV,IAAI,EAAE,GAAG,EACT,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,QAAQ,CAAC,EAAE;oBACnB,MAAM,OAAO,GAAG,CAAC,GAAG,IAAI,CAAC,CAAA;oBACzB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,QAAQ,CAAA;oBAC5B,OAAO,CAAC,OAAO,CAAC,CAAA;gBAClB,CAAC,EACD,OAAO,EAAE,OAAO,CAAC,EAAE;oBACjB,MAAM,OAAO,GAAG,CAAC,GAAG,IAAI,CAAC,CAAA;oBACzB,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,OAAO,CAAA;oBAC3B,OAAO,CAAC,OAAO,CAAC,CAAA;gBAClB,CAAC,EACD,QAAQ,EAAE,GAAG,EAAE;oBACb,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;oBACrB,OAAO,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAA;gBACpB,CAAC,GACD,CACH,CAAC;YACF,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;oBACZ,OAAO,CAAC,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAC,CAAA;gBAC9B,CAAC,cAGM;YAET,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,kBAAkB,CAAC,IAAI,CAAC,CAAC,CAAA;wBACnD,OAAO,EAAE,CAAA;oBACX,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,aAGR;gBACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,aAGjB,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC,CACF,CAAA"}
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@@ -3,10 +3,11 @@ import { DialogContent } from '@mui/material';
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import { observer } from 'mobx-react';
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import { Attributes } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
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const DetailsDialog = observer(function ({ model, onClose, }) {
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return (React.createElement(Dialog, { onClose: () => onClose(), open:
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React.createElement(Attributes, { attributes: header }))));
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//# sourceMappingURL=DetailsDlg.js.map
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{"version":3,"file":"DetailsDlg.js","sourceRoot":"","sources":["../../../src/components/dialogs/DetailsDlg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,mDAAmD,CAAA;AAK9E,MAAM,aAAa,GAAG,QAAQ,CAAC,UAAU,EACvC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IAExB,OAAO,CACL,oBAAC,MAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,EAAE,IAAI,QAAC,KAAK,EAAC,UAAU;QACrD,oBAAC,aAAa;YACZ,oBAAC,UAAU,IAAC,UAAU,EAAE,MAAM,GAAI,CACpB,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,aAAa,CAAA"}
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{"version":3,"file":"MoreInfoDlg.js","sourceRoot":"","sources":["../../../src/components/dialogs/MoreInfoDlg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,mDAAmD,CAAA;AAE9E,eAAe,QAAQ,CAAC,UAAU,EAChC,IAAI,EACJ,OAAO,GAIR;IACC,OAAO,CACL,oBAAC,MAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,EAAE,IAAI,QAAC,KAAK,EAAC,UAAU;QACrD,oBAAC,aAAa;YACZ,oBAAC,UAAU,IAAC,UAAU,EAAE,IAAI,GAAI,CAClB,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA"}
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@@ -3,13 +3,13 @@ import { observer } from 'mobx-react';
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import { makeStyles } from 'tss-react/mui';
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import { Dialog } from '@jbrowse/core/ui';
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import { Button, Checkbox, DialogActions, DialogContent, FormControlLabel, MenuItem, TextField, } from '@mui/material';
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const SettingsDialog = observer(function ({ model, onClose, }) {
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const rowHeightError = error(rowHeight);
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return (React.createElement(Dialog, { open: true, onClose: () => onClose(), title: "Settings" },
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React.createElement(FormControlLabel, { control: React.createElement(Checkbox, { checked: model.showBranchLen, onChange: () => model.toggleBranchLen() }), label: "Show branch length" }),
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onClose();
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}, variant: "contained", color: "primary" }, "Submit")))));
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//# sourceMappingURL=SettingsDlg.js.map
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@@ -0,0 +1 @@
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