pulseed 0.4.17 → 0.4.19

package/dist/interface/cli/commands/daemon.js.map

@@ -0,0 +1 @@
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package/dist/interface/cli/commands/doctor.d.ts

@@ -0,0 +1,23 @@
+type CheckStatus = "pass" | "fail" | "warn";
+export interface CheckResult {
+    name: string;
+    status: CheckStatus;
+    detail: string;
+}
+export declare function checkNodeVersion(): CheckResult;
+export declare function checkPulseedDir(baseDir?: string): CheckResult;
+export declare function checkProviderConfig(baseDir?: string): CheckResult;
+export declare function checkApiKey(baseDir?: string): CheckResult;
+export declare function checkStateDirectoryPermissions(baseDir?: string): CheckResult;
+export declare function checkProviderConfigPermissions(baseDir?: string): CheckResult;
+export declare function checkPluginPermissionWarnings(baseDir?: string): CheckResult;
+export declare function checkGoals(baseDir?: string): CheckResult;
+export declare function checkLogDirectory(baseDir?: string): CheckResult;
+export declare function checkBuild(buildPath?: string): CheckResult;
+export declare function checkDaemon(baseDir?: string): Promise<CheckResult>;
+export declare function checkNotifications(baseDir?: string): CheckResult;
+export declare function checkDiskUsage(baseDir?: string): Promise<CheckResult>;
+export declare function checkNativeTaskAgentLoopTools(): CheckResult;
+export declare function cmdDoctor(_args: string[]): Promise<number>;
+export {};
+//# sourceMappingURL=doctor.d.ts.map

package/dist/interface/cli/commands/doctor.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../../src/interface/cli/commands/doctor.ts"],"names":[],"mappings":"AA8BA,KAAK,WAAW,GAAG,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;AAE5C,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,WAAW,CAAC;IACpB,MAAM,EAAE,MAAM,CAAC;CAChB;AAmED,wBAAgB,gBAAgB,IAAI,WAAW,CAO9C;AAED,wBAAgB,eAAe,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAO7D;AAED,wBAAgB,mBAAmB,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAgBjE;AAED,wBAAgB,WAAW,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAqCzD;AAED,wBAAgB,8BAA8B,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAqB5E;AAED,wBAAgB,8BAA8B,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAuC5E;AAED,wBAAgB,6BAA6B,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAiE3E;AAED,wBAAgB,UAAU,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CA+BxD;AAED,wBAAgB,iBAAiB,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAc/D;AAED,wBAAgB,UAAU,CAAC,SAAS,SAAyC,GAAG,WAAW,CAO1F;AAED,wBAAsB,WAAW,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAkHxE;AAED,wBAAgB,kBAAkB,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,WAAW,CAQhE;AAED,wBAAsB,cAAc,CAAC,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC,CAU3E;AAED,wBAAgB,6BAA6B,IAAI,WAAW,CAiC3D;AAoBD,wBAAsB,SAAS,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAmEhE"}

package/dist/interface/cli/commands/doctor.js

@@ -0,0 +1,533 @@
+// ─── pulseed doctor — installation health check ───
+import * as fs from "node:fs";
+import * as path from "node:path";
+import yaml from "js-yaml";
+import { getPulseedDirPath, getLogsDir, getGoalsDir, getPluginsDir } from "../../../base/utils/paths.js";
+import { execFileNoThrow } from "../../../base/utils/execFileNoThrow.js";
+import { getCliRunnerBuildPath } from "../../../base/utils/pulseed-meta.js";
+import { readJsonFileOrNull } from "../../../base/utils/json-io.js";
+import { DaemonConfigSchema } from "../../../base/types/daemon.js";
+import { PluginManifestSchema } from "../../../base/types/plugin.js";
+import { PIDManager } from "../../../runtime/pid-manager.js";
+import { probeDaemonHealth } from "../../../runtime/daemon/client.js";
+import { ApprovalStore, OutboxStore, RuntimeHealthStore, compactRuntimeHealthKpi, createRuntimeStorePaths, } from "../../../runtime/store/index.js";
+import { runRuntimeStoreMaintenanceCycle } from "../../../runtime/daemon/maintenance.js";
+import { DaemonStateSchema } from "../../../runtime/types/daemon.js";
+import { summarizeTaskOutcomeLedgers } from "../../../orchestrator/execution/task/task-outcome-ledger.js";
+import { assessTaskAgentLoopToolProfileFromTools, nativeTaskAgentLoopToolProfile } from "../../../orchestrator/execution/agent-loop/agent-loop-dogfood-benchmark.js";
+import { ToolRegistry } from "../../../tools/registry.js";
+import { createBuiltinTools } from "../../../tools/builtin/index.js";
+function resolveDaemonRuntimeRoot(baseDir, configuredRoot) {
+    if (!configuredRoot || configuredRoot.trim() === "") {
+        return path.join(baseDir, "runtime");
+    }
+    return path.isAbsolute(configuredRoot)
+        ? configuredRoot
+        : path.resolve(baseDir, configuredRoot);
+}
+async function loadDaemonConfig(baseDir) {
+    const configPath = path.join(baseDir, "daemon.json");
+    const legacyConfigPath = path.join(baseDir, "daemon-config.json");
+    const configRaw = (await readJsonFileOrNull(configPath)) ??
+        (await readJsonFileOrNull(legacyConfigPath));
+    const parsed = configRaw !== null ? DaemonConfigSchema.safeParse(configRaw) : null;
+    return parsed?.success ? parsed.data : DaemonConfigSchema.parse({});
+}
+function formatRelativeTimestamp(timestamp) {
+    const ms = Date.now() - timestamp;
+    if (ms < 60000)
+        return `${Math.floor(ms / 1000)}s ago`;
+    if (ms < 3600000)
+        return `${Math.floor(ms / 60000)}m ago`;
+    if (ms < 86400000)
+        return `${Math.floor(ms / 3600000)}h ago`;
+    return `${Math.floor(ms / 86400000)}d ago`;
+}
+function formatCompactKpiDetail(kpi) {
+    const compact = compactRuntimeHealthKpi(kpi);
+    if (!compact) {
+        return "KPI unavailable";
+    }
+    return `KPI process=${compact.process_alive ? "up" : "down"} accept=${compact.can_accept_command ? "up" : "down"} execute=${compact.can_execute_task ? "up" : "down"} (${compact.status})`;
+}
+function formatDurationMs(ms) {
+    if (ms < 1000)
+        return `${ms}ms`;
+    if (ms < 60_000)
+        return `${(ms / 1000).toFixed(1)}s`;
+    return `${(ms / 60_000).toFixed(1)}m`;
+}
+function formatPercent(value) {
+    return value === null ? "n/a" : `${(value * 100).toFixed(1)}%`;
+}
+function formatLivePingDetail(latencyMs, error) {
+    const latency = formatDurationMs(latencyMs);
+    return error ? `live ping failed (${latency}; ${error})` : `live ping ok (${latency})`;
+}
+function formatOctalMode(mode) {
+    return `0${(mode & 0o777).toString(8)}`;
+}
+function isGroupOrWorldAccessible(mode) {
+    return (mode & 0o077) !== 0;
+}
+function formatNameList(names, limit = 5) {
+    const shown = names.slice(0, limit).join(", ");
+    return names.length > limit ? `${shown}, +${names.length - limit} more` : shown;
+}
+// ─── Individual checks ───
+export function checkNodeVersion() {
+    const version = process.versions.node;
+    const major = parseInt(version.split(".")[0] ?? "0", 10);
+    if (major >= 20) {
+        return { name: "Node.js version", status: "pass", detail: `v${version} (>= 20 required)` };
+    }
+    return { name: "Node.js version", status: "fail", detail: `v${version} (>= 20 required)` };
+}
+export function checkPulseedDir(baseDir) {
+    const dir = baseDir ?? getPulseedDirPath();
+    const displayDir = dir.replace(process.env["HOME"] ?? "", "~");
+    if (fs.existsSync(dir)) {
+        return { name: "PulSeed directory", status: "pass", detail: `${displayDir} exists` };
+    }
+    return { name: "PulSeed directory", status: "fail", detail: `${displayDir} not found` };
+}
+export function checkProviderConfig(baseDir) {
+    const dir = baseDir ?? getPulseedDirPath();
+    const configPath = path.join(dir, "provider.json");
+    const displayPath = configPath.replace(process.env["HOME"] ?? "", "~");
+    if (!fs.existsSync(configPath)) {
+        return { name: "Provider config", status: "fail", detail: `${displayPath} not found` };
+    }
+    try {
+        const content = fs.readFileSync(configPath, "utf-8");
+        JSON.parse(content);
+        return { name: "Provider config", status: "pass", detail: `${displayPath} found` };
+    }
+    catch {
+        return { name: "Provider config", status: "fail", detail: `${displayPath} is invalid JSON` };
+    }
+}
+export function checkApiKey(baseDir) {
+    // Check environment variables first
+    const anthropicKey = process.env["ANTHROPIC_API_KEY"];
+    const openaiKey = process.env["OPENAI_API_KEY"];
+    if (anthropicKey || openaiKey) {
+        const which = anthropicKey ? "ANTHROPIC_API_KEY" : "OPENAI_API_KEY";
+        return { name: "API key", status: "pass", detail: `${which} found in environment` };
+    }
+    // Check provider.json
+    const dir = baseDir ?? getPulseedDirPath();
+    const configPath = path.join(dir, "provider.json");
+    if (fs.existsSync(configPath)) {
+        try {
+            const content = fs.readFileSync(configPath, "utf-8");
+            const parsed = JSON.parse(content);
+            if (parsed !== null &&
+                typeof parsed === "object" &&
+                "api_key" in parsed &&
+                typeof parsed["api_key"] === "string" &&
+                parsed["api_key"].length > 0) {
+                return { name: "API key", status: "pass", detail: "api_key found in provider.json" };
+            }
+        }
+        catch {
+            // ignore parse errors — already checked in checkProviderConfig
+        }
+    }
+    return {
+        name: "API key",
+        status: "fail",
+        detail: "ANTHROPIC_API_KEY / OPENAI_API_KEY not set (checked env + provider.json)",
+    };
+}
+export function checkStateDirectoryPermissions(baseDir) {
+    const dir = baseDir ?? getPulseedDirPath();
+    const displayDir = dir.replace(process.env["HOME"] ?? "", "~");
+    if (!fs.existsSync(dir)) {
+        return { name: "State permissions", status: "warn", detail: `${displayDir} not found` };
+    }
+    try {
+        const mode = fs.statSync(dir).mode;
+        if (isGroupOrWorldAccessible(mode)) {
+            return {
+                name: "State permissions",
+                status: "warn",
+                detail: `${displayDir} is ${formatOctalMode(mode)}; recommended 0700`,
+            };
+        }
+        return { name: "State permissions", status: "pass", detail: `${displayDir} is ${formatOctalMode(mode)}` };
+    }
+    catch {
+        return { name: "State permissions", status: "warn", detail: `${displayDir} could not be inspected` };
+    }
+}
+export function checkProviderConfigPermissions(baseDir) {
+    const dir = baseDir ?? getPulseedDirPath();
+    const configPath = path.join(dir, "provider.json");
+    const displayPath = configPath.replace(process.env["HOME"] ?? "", "~");
+    if (!fs.existsSync(configPath)) {
+        return { name: "Provider permissions", status: "warn", detail: `${displayPath} not found` };
+    }
+    let hasStoredApiKey = false;
+    try {
+        const content = fs.readFileSync(configPath, "utf-8");
+        const parsed = JSON.parse(content);
+        hasStoredApiKey =
+            parsed !== null &&
+                typeof parsed === "object" &&
+                typeof parsed["api_key"] === "string" &&
+                (parsed["api_key"] ?? "").length > 0;
+    }
+    catch {
+        return { name: "Provider permissions", status: "warn", detail: `${displayPath} could not be parsed` };
+    }
+    if (!hasStoredApiKey) {
+        return { name: "Provider permissions", status: "pass", detail: "no api_key stored in provider.json" };
+    }
+    try {
+        const mode = fs.statSync(configPath).mode;
+        if (isGroupOrWorldAccessible(mode)) {
+            return {
+                name: "Provider permissions",
+                status: "warn",
+                detail: `${displayPath} is ${formatOctalMode(mode)}; recommended 0600 because it stores api_key`,
+            };
+        }
+        return { name: "Provider permissions", status: "pass", detail: `${displayPath} is ${formatOctalMode(mode)}` };
+    }
+    catch {
+        return { name: "Provider permissions", status: "warn", detail: `${displayPath} could not be inspected` };
+    }
+}
+export function checkPluginPermissionWarnings(baseDir) {
+    const pluginsDir = getPluginsDir(baseDir ?? getPulseedDirPath());
+    if (!fs.existsSync(pluginsDir)) {
+        return { name: "Plugin permissions", status: "pass", detail: "no plugins installed" };
+    }
+    let entries;
+    try {
+        entries = fs.readdirSync(pluginsDir, { withFileTypes: true });
+    }
+    catch {
+        return { name: "Plugin permissions", status: "warn", detail: "could not read plugins directory" };
+    }
+    const shellPlugins = [];
+    let unreadableManifestCount = 0;
+    for (const entry of entries) {
+        if (!entry.isDirectory())
+            continue;
+        const pluginDir = path.join(pluginsDir, entry.name);
+        const yamlPath = path.join(pluginDir, "plugin.yaml");
+        const jsonPath = path.join(pluginDir, "plugin.json");
+        let raw;
+        try {
+            if (fs.existsSync(yamlPath)) {
+                raw = yaml.load(fs.readFileSync(yamlPath, "utf-8"));
+            }
+            else if (fs.existsSync(jsonPath)) {
+                raw = JSON.parse(fs.readFileSync(jsonPath, "utf-8"));
+            }
+            else {
+                continue;
+            }
+        }
+        catch {
+            unreadableManifestCount += 1;
+            continue;
+        }
+        const parsed = PluginManifestSchema.safeParse(raw);
+        if (!parsed.success) {
+            unreadableManifestCount += 1;
+            continue;
+        }
+        if (parsed.data.permissions.shell) {
+            shellPlugins.push(parsed.data.name);
+        }
+    }
+    if (shellPlugins.length > 0) {
+        return {
+            name: "Plugin permissions",
+            status: "warn",
+            detail: `${shellPlugins.length} plugin${shellPlugins.length === 1 ? "" : "s"} request shell permission: ${formatNameList(shellPlugins)}`,
+        };
+    }
+    if (unreadableManifestCount > 0) {
+        return {
+            name: "Plugin permissions",
+            status: "warn",
+            detail: `${unreadableManifestCount} plugin manifest${unreadableManifestCount === 1 ? "" : "s"} could not be inspected`,
+        };
+    }
+    return { name: "Plugin permissions", status: "pass", detail: "no shell-capable plugins found" };
+}
+export function checkGoals(baseDir) {
+    const goalsDir = getGoalsDir(baseDir ?? getPulseedDirPath());
+    if (!fs.existsSync(goalsDir)) {
+        return { name: "Goals", status: "warn", detail: "goals directory not found" };
+    }
+    let count = 0;
+    try {
+        const entries = fs.readdirSync(goalsDir, { withFileTypes: true });
+        for (const entry of entries) {
+            if (entry.isFile() && entry.name.endsWith(".json")) {
+                count += 1;
+                continue;
+            }
+            if (!entry.isDirectory()) {
+                continue;
+            }
+            if (fs.existsSync(path.join(goalsDir, entry.name, "goal.json"))) {
+                count += 1;
+            }
+        }
+    }
+    catch {
+        return { name: "Goals", status: "warn", detail: "could not read goals directory" };
+    }
+    if (count === 0) {
+        return { name: "Goals", status: "warn", detail: "0 goals configured" };
+    }
+    return { name: "Goals", status: "pass", detail: `${count} goal${count === 1 ? "" : "s"} configured` };
+}
+export function checkLogDirectory(baseDir) {
+    const logsDir = getLogsDir(baseDir ?? getPulseedDirPath());
+    const displayDir = logsDir.replace(process.env["HOME"] ?? "", "~");
+    if (!fs.existsSync(logsDir)) {
+        return { name: "Log directory", status: "fail", detail: `${displayDir} not found` };
+    }
+    try {
+        fs.accessSync(logsDir, fs.constants.W_OK);
+        return { name: "Log directory", status: "pass", detail: `${displayDir} writable` };
+    }
+    catch {
+        return { name: "Log directory", status: "fail", detail: `${displayDir} not writable` };
+    }
+}
+export function checkBuild(buildPath = getCliRunnerBuildPath(import.meta.url)) {
+    const displayPath = path.relative(process.cwd(), buildPath) || buildPath;
+    if (fs.existsSync(buildPath)) {
+        return { name: "Build", status: "pass", detail: `${displayPath} exists` };
+    }
+    return { name: "Build", status: "fail", detail: `${displayPath} not found (run: npm run build)` };
+}
+export async function checkDaemon(baseDir) {
+    const dir = baseDir ?? getPulseedDirPath();
+    const pidManager = new PIDManager(dir);
+    const pidFileExists = fs.existsSync(pidManager.getPath());
+    const pidStatus = await pidManager.inspect();
+    const daemonConfig = await loadDaemonConfig(dir);
+    const runtimeRoot = resolveDaemonRuntimeRoot(dir, daemonConfig.runtime_root);
+    const runtimeHealth = await new RuntimeHealthStore(runtimeRoot).loadSnapshot();
+    const daemonStateRaw = await readJsonFileOrNull(path.join(dir, "daemon-state.json"));
+    const daemonState = daemonStateRaw !== null
+        ? DaemonStateSchema.safeParse(daemonStateRaw)
+        : null;
+    if (!pidFileExists && !pidStatus.running) {
+        return { name: "Daemon", status: "pass", detail: "stopped (clean state)" };
+    }
+    const pidInfo = pidStatus.info ?? await pidManager.readPID();
+    if (pidInfo === null && pidFileExists) {
+        return { name: "Daemon", status: "warn", detail: "PID file exists but is unreadable" };
+    }
+    const runtimePid = pidStatus.runtimePid ?? pidInfo?.runtime_pid ?? pidInfo?.pid ?? null;
+    const watchdogPid = pidInfo?.watchdog_pid ?? pidStatus.ownerPid ?? null;
+    const runtimeAlive = typeof runtimePid === "number" && pidStatus.alivePids.includes(runtimePid);
+    const watchdogAlive = typeof watchdogPid === "number" && pidStatus.alivePids.includes(watchdogPid);
+    const runtimeState = daemonState?.success ? daemonState.data.status : null;
+    const runtimeKpi = runtimeHealth?.kpi;
+    const kpiSummary = runtimeKpi ? formatCompactKpiDetail(runtimeKpi) : null;
+    const healthStatus = runtimeKpi
+        ? compactRuntimeHealthKpi(runtimeKpi)?.status ?? "degraded"
+        : "degraded";
+    const taskKpis = await summarizeTaskOutcomeLedgers(dir);
+    const taskSummary = taskKpis.total_tasks > 0
+        ? `task success=${taskKpis.succeeded}/${taskKpis.terminal_tasks} (${formatPercent(taskKpis.success_rate)}), in-flight=${taskKpis.inflight_tasks}/${taskKpis.total_tasks}, retry=${taskKpis.retried}/${taskKpis.total_tasks} (${formatPercent(taskKpis.retry_rate)})${taskKpis.p95_created_to_completed_ms !== null
+            ? `, total p95=${formatDurationMs(taskKpis.p95_created_to_completed_ms)}`
+            : ""}`
+        : null;
+    const liveProbe = runtimeAlive
+        ? await probeDaemonHealth({ host: "127.0.0.1", port: daemonConfig.event_server_port })
+        : null;
+    const livePingSummary = liveProbe
+        ? formatLivePingDetail(liveProbe.latency_ms, liveProbe.ok ? undefined : liveProbe.error)
+        : null;
+    if (runtimeState === "crashed" || runtimeState === "stopping") {
+        return {
+            name: "Daemon",
+            status: "fail",
+            detail: runtimeState === "crashed"
+                ? `daemon state reports crashed${kpiSummary ? `; ${kpiSummary}` : ""}`
+                : `daemon state reports stopping${kpiSummary ? `; ${kpiSummary}` : ""}`,
+        };
+    }
+    if (!runtimeAlive) {
+        if (watchdogAlive) {
+            return {
+                name: "Daemon",
+                status: "fail",
+                detail: runtimePid !== null
+                    ? `daemon restarting (runtime PID: ${runtimePid}, watchdog PID: ${watchdogPid})`
+                    : `daemon restarting (watchdog PID: ${watchdogPid})`,
+            };
+        }
+        return {
+            name: "Daemon",
+            status: pidFileExists ? "warn" : "pass",
+            detail: runtimePid !== null
+                ? `stale PID file (PID: ${runtimePid} not running)`
+                : "stopped (clean state)",
+        };
+    }
+    if (watchdogPid && watchdogPid !== runtimePid && !watchdogAlive) {
+        return {
+            name: "Daemon",
+            status: "warn",
+            detail: `running (PID: ${runtimePid}), watchdog PID: ${watchdogPid} missing`,
+        };
+    }
+    const detailPrefix = runtimeState === "idle"
+        ? `idle daemon running (PID: ${runtimePid})`
+        : `running (PID: ${runtimePid})`;
+    const detail = watchdogPid && watchdogPid !== runtimePid
+        ? `${detailPrefix}, watchdog PID: ${watchdogPid}`
+        : detailPrefix;
+    const detailWithHealth = kpiSummary
+        ? `${detail}; ${kpiSummary}${runtimeKpi?.degraded_at !== undefined
+            ? `; degraded ${formatRelativeTimestamp(runtimeKpi.degraded_at)}`
+            : runtimeKpi?.recovered_at !== undefined
+                ? `; recovered ${formatRelativeTimestamp(runtimeKpi.recovered_at)}`
+                : ""}${livePingSummary ? `; ${livePingSummary}` : ""}${taskSummary ? `; ${taskSummary}` : ""}`
+        : `${detail}; KPI telemetry unavailable${livePingSummary ? `; ${livePingSummary}` : ""}${taskSummary ? `; ${taskSummary}` : ""}`;
+    const effectiveHealthStatus = liveProbe && !liveProbe.ok ? "failed" : healthStatus;
+    return {
+        name: "Daemon",
+        status: effectiveHealthStatus === "failed"
+            ? "fail"
+            : effectiveHealthStatus === "degraded"
+                ? "warn"
+                : "pass",
+        detail: detailWithHealth,
+    };
+}
+export function checkNotifications(baseDir) {
+    const dir = baseDir ?? getPulseedDirPath();
+    const notifPath = path.join(dir, "notification.json");
+    if (fs.existsSync(notifPath)) {
+        return { name: "Notifications", status: "pass", detail: "notification.json found" };
+    }
+    return { name: "Notifications", status: "warn", detail: "not configured (optional)" };
+}
+export async function checkDiskUsage(baseDir) {
+    const dir = baseDir ?? getPulseedDirPath();
+    const displayDir = dir.replace(process.env["HOME"] ?? "", "~");
+    const result = await execFileNoThrow("du", ["-sh", dir], { timeoutMs: 5000 });
+    if (result.exitCode === 0 && result.stdout) {
+        const size = result.stdout.split("\t")[0]?.trim() ?? "unknown";
+        return { name: "Disk space", status: "warn", detail: `${displayDir} is ${size}` };
+    }
+    return { name: "Disk space", status: "warn", detail: `${displayDir} (could not determine size)` };
+}
+export function checkNativeTaskAgentLoopTools() {
+    const registry = new ToolRegistry();
+    const tools = createBuiltinTools({ registry });
+    for (const tool of tools) {
+        registry.register(tool);
+    }
+    const assessment = assessTaskAgentLoopToolProfileFromTools(registry.listAll());
+    const requiredTotal = nativeTaskAgentLoopToolProfile.requiredToolNames.length;
+    const recommendedTotal = nativeTaskAgentLoopToolProfile.recommendedToolNames.length;
+    const requiredAvailable = requiredTotal - assessment.missingRequiredToolNames.length;
+    const recommendedAvailable = recommendedTotal - assessment.missingRecommendedToolNames.length;
+    const coverage = `required ${requiredAvailable}/${requiredTotal}, recommended ${recommendedAvailable}/${recommendedTotal}`;
+    if (!assessment.ready) {
+        return {
+            name: "Native AgentLoop tools",
+            status: "fail",
+            detail: `${coverage}; missing required: ${assessment.missingRequiredToolNames.join(", ")}`,
+        };
+    }
+    if (assessment.missingRecommendedToolNames.length > 0) {
+        return {
+            name: "Native AgentLoop tools",
+            status: "warn",
+            detail: `${coverage}; missing recommended: ${assessment.missingRecommendedToolNames.join(", ")}`,
+        };
+    }
+    return {
+        name: "Native AgentLoop tools",
+        status: "pass",
+        detail: `${coverage}; ${assessment.profileName} profile ready`,
+    };
+}
+// ─── Output helpers ───
+function statusIcon(status) {
+    switch (status) {
+        case "pass": return "\u2713";
+        case "fail": return "\u2717";
+        case "warn": return "\u26a0";
+    }
+}
+function formatRow(result) {
+    const icon = statusIcon(result.status);
+    const name = result.name.padEnd(20);
+    return `${icon} ${name} ${result.detail}`;
+}
+// ─── Main command ───
+export async function cmdDoctor(_args) {
+    const baseDir = getPulseedDirPath();
+    const repair = _args.includes("--repair");
+    if (repair) {
+        const runtimeRoot = path.join(baseDir, "runtime");
+        const runtimePaths = createRuntimeStorePaths(runtimeRoot);
+        const repairLogger = {
+            debug: (message, context) => {
+                console.log(`[repair][debug] ${message}${context ? ` ${JSON.stringify(context)}` : ""}`);
+            },
+            info: (message, context) => {
+                console.log(`[repair][info] ${message}${context ? ` ${JSON.stringify(context)}` : ""}`);
+            },
+            warn: (message, context) => {
+                console.log(`[repair][warn] ${message}${context ? ` ${JSON.stringify(context)}` : ""}`);
+            },
+            error: (message, context) => {
+                console.log(`[repair][error] ${message}${context ? ` ${JSON.stringify(context)}` : ""}`);
+            },
+        };
+        const maintenanceReport = await runRuntimeStoreMaintenanceCycle({
+            runtimeRoot,
+            approvalStore: new ApprovalStore(runtimePaths),
+            outboxStore: new OutboxStore(runtimePaths),
+            runtimeHealthStore: new RuntimeHealthStore(runtimePaths),
+            logger: repairLogger,
+        });
+        console.log(`Repair: approvals pruned=${maintenanceReport.approvals.prunedResolved}, outbox pruned=${maintenanceReport.outbox.pruned}, claims pruned=${maintenanceReport.claims.pruned}, health=${maintenanceReport.health.status ?? "unknown"}`);
+    }
+    const checks = [
+        checkNodeVersion(),
+        checkPulseedDir(baseDir),
+        checkProviderConfig(baseDir),
+        checkApiKey(baseDir),
+        checkStateDirectoryPermissions(baseDir),
+        checkProviderConfigPermissions(baseDir),
+        checkPluginPermissionWarnings(baseDir),
+        checkGoals(baseDir),
+        checkLogDirectory(baseDir),
+        checkBuild(),
+        checkNativeTaskAgentLoopTools(),
+        await checkDaemon(baseDir),
+        checkNotifications(baseDir),
+        await checkDiskUsage(baseDir),
+    ];
+    const passed = checks.filter((c) => c.status === "pass").length;
+    const failed = checks.filter((c) => c.status === "fail").length;
+    const warned = checks.filter((c) => c.status === "warn").length;
+    console.log("PulSeed Doctor");
+    console.log("\u2500".repeat(14));
+    for (const check of checks) {
+        console.log(formatRow(check));
+    }
+    console.log("");
+    console.log(`Summary: ${passed} passed, ${failed} failed, ${warned} warnings`);
+    return failed > 0 ? 1 : 0;
+}
+//# sourceMappingURL=doctor.js.map