psyclaw 0.28.1 → 0.28.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +5 -5
- package/agents/recommended/catalog.json +1 -1
- package/dist/src/adapters/pi/extension.js +79 -25
- package/dist/src/adapters/pi/extension.js.map +1 -1
- package/dist/src/ars/keybindings.d.ts +13 -0
- package/dist/src/ars/keybindings.js +50 -0
- package/dist/src/ars/keybindings.js.map +1 -0
- package/dist/src/ars/mode-editor.d.ts +25 -0
- package/dist/src/ars/mode-editor.js +78 -0
- package/dist/src/ars/mode-editor.js.map +1 -0
- package/dist/src/ars/profile.d.ts +4 -1
- package/dist/src/ars/profile.js +23 -6
- package/dist/src/ars/profile.js.map +1 -1
- package/dist/src/chat.js +3 -0
- package/dist/src/chat.js.map +1 -1
- package/dist/src/panel/server.js +1 -1
- package/dist/src/panel/server.js.map +1 -1
- package/package.json +10 -3
- package/vendor/academic-paper-skills/LICENSE +21 -0
- package/vendor/academic-paper-skills/NOTICE.md +7 -0
- package/vendor/academic-paper-skills/PSYCLAW_SOURCE.json +14 -0
- package/vendor/academic-paper-skills/academic-paper-composer/SKILL.md +840 -0
- package/vendor/academic-paper-skills/academic-paper-composer/references/section_guides.md +675 -0
- package/vendor/academic-paper-skills/academic-paper-composer/references/writing_standards.md +629 -0
- package/vendor/academic-paper-skills/academic-paper-composer/scripts/chapter_quality_check.py +470 -0
- package/vendor/academic-paper-skills/academic-paper-composer/scripts/final_evaluation.py +550 -0
- package/vendor/academic-paper-skills/academic-paper-strategist/SKILL.md +670 -0
- package/vendor/academic-paper-skills/academic-paper-strategist/references/quality_standards.md +336 -0
- package/vendor/academic-paper-skills/academic-paper-strategist/references/search_strategy.md +459 -0
- package/vendor/academic-paper-skills/academic-paper-strategist/scripts/evaluate_samples.py +300 -0
- package/vendor/academic-paper-skills/academic-paper-strategist/scripts/gap_analysis.py +399 -0
- package/vendor/ars/pi/wrapper.js +9 -0
- package/vendor/nature-skills/LICENSE +201 -0
- package/vendor/nature-skills/NOTICE.md +7 -0
- package/vendor/nature-skills/PSYCLAW_SOURCE.json +19 -0
- package/vendor/nature-skills/skills/nature-figure/README.md +107 -0
- package/vendor/nature-skills/skills/nature-figure/README_EN.md +107 -0
- package/vendor/nature-skills/skills/nature-figure/SKILL.md +154 -0
- package/vendor/nature-skills/skills/nature-figure/agents/openai.yaml +4 -0
- package/vendor/nature-skills/skills/nature-figure/evals/evals.json +325 -0
- package/vendor/nature-skills/skills/nature-figure/manifest.yaml +103 -0
- package/vendor/nature-skills/skills/nature-figure/references/ai-graphical-abstract-workflow.md +129 -0
- package/vendor/nature-skills/skills/nature-figure/references/api.md +576 -0
- package/vendor/nature-skills/skills/nature-figure/references/asset-adaptation.md +72 -0
- package/vendor/nature-skills/skills/nature-figure/references/backend-selection.md +118 -0
- package/vendor/nature-skills/skills/nature-figure/references/chart-types.md +348 -0
- package/vendor/nature-skills/skills/nature-figure/references/common-patterns.md +371 -0
- package/vendor/nature-skills/skills/nature-figure/references/demos.md +58 -0
- package/vendor/nature-skills/skills/nature-figure/references/design-theory.md +467 -0
- package/vendor/nature-skills/skills/nature-figure/references/figure-contract.md +122 -0
- package/vendor/nature-skills/skills/nature-figure/references/figure-legend-conventions.md +90 -0
- package/vendor/nature-skills/skills/nature-figure/references/multipanel-evidence-architecture.md +268 -0
- package/vendor/nature-skills/skills/nature-figure/references/nature-2026-observations.md +124 -0
- package/vendor/nature-skills/skills/nature-figure/references/nature-article-requirements.md +149 -0
- package/vendor/nature-skills/skills/nature-figure/references/openrouter-image-generation.md +141 -0
- package/vendor/nature-skills/skills/nature-figure/references/qa-contract.md +344 -0
- package/vendor/nature-skills/skills/nature-figure/references/r-template-index.md +66 -0
- package/vendor/nature-skills/skills/nature-figure/references/r-workflow.md +234 -0
- package/vendor/nature-skills/skills/nature-figure/references/template-catalog.md +33 -0
- package/vendor/nature-skills/skills/nature-figure/references/tutorials.md +260 -0
- package/vendor/nature-skills/skills/nature-figure/requirements.txt +1 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/audit_figure_collisions.py +742 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/audit_panel_alignment.py +933 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/audit_pdf_text.py +152 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/figure_safety.py +50 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/generate_openrouter_schematic.py +260 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/nature_figure_backend.py +93 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/panel_alignment.R +188 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/plot_templates.py +604 -0
- package/vendor/nature-skills/skills/nature-figure/scripts/validate_figure.py +835 -0
- package/vendor/nature-skills/skills/nature-figure/static/core/contract.md +55 -0
- package/vendor/nature-skills/skills/nature-figure/static/core/stance.md +41 -0
- package/vendor/nature-skills/skills/nature-figure/static/fragments/backend/python.md +56 -0
- package/vendor/nature-skills/skills/nature-figure/static/fragments/backend/r.md +63 -0
- package/vendor/nature-skills/skills/nature-figure/tests/test_figure_safety.py +209 -0
- package/vendor/nature-skills/skills/nature-polishing/README.md +58 -0
- package/vendor/nature-skills/skills/nature-polishing/README_EN.md +58 -0
- package/vendor/nature-skills/skills/nature-polishing/SKILL.md +111 -0
- package/vendor/nature-skills/skills/nature-polishing/agents/openai.yaml +4 -0
- package/vendor/nature-skills/skills/nature-polishing/manifest.yaml +101 -0
- package/vendor/nature-skills/skills/nature-polishing/references/latex-layout.md +211 -0
- package/vendor/nature-skills/skills/nature-polishing/references/nat-comms-2025-diction.md +73 -0
- package/vendor/nature-skills/skills/nature-polishing/references/phrasebank-playbook.md +175 -0
- package/vendor/nature-skills/skills/nature-polishing/references/published-article-patterns.md +126 -0
- package/vendor/nature-skills/skills/nature-polishing/references/section-moves.md +252 -0
- package/vendor/nature-skills/skills/nature-polishing/references/style-guardrails.md +94 -0
- package/vendor/nature-skills/skills/nature-polishing/references/writing-strategy.md +160 -0
- package/vendor/nature-skills/skills/nature-polishing/static/core/failure-modes.md +29 -0
- package/vendor/nature-skills/skills/nature-polishing/static/core/output-format.md +21 -0
- package/vendor/nature-skills/skills/nature-polishing/static/core/stance.md +26 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/journal/generic.md +17 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/journal/nat-comms.md +38 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/journal/nat-mach-intell.md +102 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/journal/nature.md +19 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/language/en.md +19 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/language/zh-to-en.md +19 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/algorithmic.md +18 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/hypothesis.md +17 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/methods.md +35 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/research.md +29 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/review.md +17 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/abstract.md +26 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/conclusion.md +15 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/discussion.md +48 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/intro.md +33 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/methods.md +26 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/results.md +61 -0
- package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/title.md +17 -0
- package/vendor/nature-skills/skills/nature-ref-verifier/README.md +44 -0
- package/vendor/nature-skills/skills/nature-ref-verifier/README_EN.md +44 -0
- package/vendor/nature-skills/skills/nature-ref-verifier/SKILL.md +196 -0
- package/vendor/nature-skills/skills/nature-ref-verifier/agents/openai.yaml +4 -0
- package/vendor/nature-skills/skills/nature-ref-verifier/manifest.yaml +19 -0
- package/vendor/nature-skills/skills/nature-ref-verifier/references/common-patterns.md +96 -0
- package/vendor/nature-skills/skills/nature-shared/README.md +43 -0
- package/vendor/nature-skills/skills/nature-shared/README_EN.md +43 -0
- package/vendor/nature-skills/skills/nature-shared/SKILL.md +33 -0
- package/vendor/nature-skills/skills/nature-shared/agents/openai.yaml +6 -0
- package/vendor/nature-skills/skills/nature-shared/core/consistency-sweep.md +122 -0
- package/vendor/nature-skills/skills/nature-shared/core/discussion-argument-language.md +192 -0
- package/vendor/nature-skills/skills/nature-shared/core/ethics.md +88 -0
- package/vendor/nature-skills/skills/nature-shared/core/main-text-discipline.md +179 -0
- package/vendor/nature-skills/skills/nature-shared/core/nature-abstract.md +171 -0
- package/vendor/nature-skills/skills/nature-shared/core/nature-introduction.md +164 -0
- package/vendor/nature-skills/skills/nature-shared/core/nature-results-discussion.md +215 -0
- package/vendor/nature-skills/skills/nature-shared/core/paper-type-taxonomy.md +41 -0
- package/vendor/nature-skills/skills/nature-shared/core/reader-workflow.md +21 -0
- package/vendor/nature-skills/skills/nature-shared/core/research-compliance.md +192 -0
- package/vendor/nature-skills/skills/nature-shared/core/terminology-ledger.md +58 -0
- package/vendor/nature-skills/skills/nature-shared/journal-formats/nat-comms.md +139 -0
- package/vendor/nature-skills/skills/nature-shared/journal-formats/nature-machine-intelligence.md +431 -0
- package/vendor/nature-skills/skills/nature-shared/journal-formats/nature.md +313 -0
- package/vendor/nature-skills/skills/nature-shared/manifest.yaml +52 -0
- package/vendor/nature-skills/skills/nature-shared/scripts/check_consistency.py +273 -0
- package/vendor/nature-skills/skills/nature-shared/tests/test_check_consistency.py +63 -0
package/vendor/nature-skills/skills/nature-shared/journal-formats/nature-machine-intelligence.md
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# Nature Machine Intelligence submission requirements
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Canonical, stage-aware rules for manuscripts submitted to **Nature Machine
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Intelligence** (`NMI`; route key `nat-mach-intell`). This file contains the
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journal facts. A requesting skill supplies its own drafting, polishing, figure,
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data or statistics action layer.
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Do not substitute the flagship *Nature* or *Nature Communications* limits.
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When an editor gives manuscript-specific instructions, those instructions take
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priority over this public-page snapshot.
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## Contents
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1. Authority and stage gate
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2. Editorial scope and article types
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3. Article and Analysis contract
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4. Other content types
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5. Initial-submission package
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6. Writing, structure and accessibility
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7. Cover letter, review mode and related work
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8. Data, code and reporting standards
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9. Figures, Extended Data and Supplementary Information
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10. Accepted-in-principle production contract
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11. Requirements not stated as fixed numbers
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12. Official sources
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## 1. Authority and stage gate
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Record the active stage before applying a rule:
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- `initial_submission`: before the first editorial decision. A complete,
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reviewable manuscript is required, but no special house formatting is
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required.
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- `revision`: after peer review. Follow the handling editor's instructions in
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addition to the public guide and preserve a point-by-point response record.
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- `accepted_in_principle`: supply editable text, production-quality figures,
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final declarations, supporting-information inventory and requested forms.
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- `proof`: correct production errors only; do not silently introduce a new
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scientific claim or analysis.
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Do not block an initial submission for missing final-production typography,
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editable source artwork, final table placement or ORCID linking. Do block or
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flag an initial package that lacks required scientific content, a cover letter,
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required availability statements, disclosed overlap or review access to data
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and central custom code.
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## 2. Editorial scope and article types
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### Scope fit
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The journal considers high-quality original research and reviews across
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machine learning, robotics and artificial intelligence, including the broader
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scientific, societal and industrial effects of these technologies. It aims to
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support dialogue across disciplines, so a technically strong paper still needs
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an intelligible question, consequence and audience beyond one narrow benchmark
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community.
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For an original-research **Article**, verify that the work presents substantial
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novel research and a complex, well-supported story. Several techniques or
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approaches may be needed, but method count is not a substitute for scientific
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importance, validation or scope fit.
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### Supported content types
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- Article
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- Analysis
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- Review Article
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- Perspective
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- Correspondence
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- Comment
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- Reusability Report
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Primary research is normally eligible for either subscription publication or
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Gold open access. Non-primary content types are not normally eligible for Gold
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open access and should not be used to smuggle in new primary findings; only
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minimal supporting data are appropriate where the content type permits them.
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## 3. Article and Analysis contract
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### Article limits
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| Main text | up to **3,500 words** |
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| Excluded from main-text count | abstract, Methods, references and figure legends |
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| Abstract | up to **150 words**, unreferenced |
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| Display items | up to **6** figures and tables combined |
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| References | typically up to **50** |
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| Supplementary Information | permitted when relevant |
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### Analysis limits
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| Main text | up to **3,500 words** |
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| Abstract | **100–150 words**, unreferenced |
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1. Introduction, without an `Introduction` heading
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2. Results
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3. Discussion
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4. Methods
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use subheadings. The Methods section should be concise but contain enough
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detail for interpretation and replication; original research publishes Methods
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online.
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Treat the six-item display allowance as a combined figure-plus-table budget.
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validation into unreadable composite panels.
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## 4. Other content types
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| Review Article | **3,000–4,000 words** | illustrations strongly encouraged | up to **100** | synthesize a field; annotations are encouraged for the most important references, normally no more than 10% of the list |
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| Perspective | **3,000–4,000 words** | as justified | up to **100** | present a scholarly, forward-looking viewpoint rather than a disguised original Article |
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| Correspondence | **500–1,000 words** | up to **1** | up to **10** | should not contain research data or analysis |
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| Comment | **1,500–2,000 words** | as justified | up to **15** | should not be a normal primary-research report |
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| Reusability Report | follow the Article format | follow the Article format | follow the Article format | evaluate robustness or reusability of existing code rather than merely announcing software |
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current content-type page or the commissioning editor's instructions.
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## 5. Initial-submission package
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### Accepted review formats
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is complete and reviewable. The journal accepts:
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- PDF
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- one complete manuscript file containing the Methods, figures and any
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Extended Data used at review stage
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- a **cover letter**
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- Supplementary Information when needed for the conclusions, understanding or
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replication
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The manuscript should include:
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- author names and affiliations, unless optional double-anonymized review is
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selected
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- enough findings, methods and material detail for editorial and peer review
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- a complete reference list
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metadata where necessary without making the science uninterpretable
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under consideration or in press.
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## 8. Data, code and reporting standards
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available
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burying them in Supplementary Information
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access procedure precisely in the manuscript
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can be accessed and describe any restrictions.
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inputs needed to reproduce key results
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Open Source Initiative-approved licence when release is possible
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central to the paper
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completeness to `nature-statistics`.
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type or field requires one, including relevant life, behavioural, social,
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ecological and specified physical-science routes.
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applicable.
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encouraged; cite the protocol in Methods.
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structure, chemistry, taxonomy and provenance-sensitive work.
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current Nature Portfolio policy.
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are not required at this stage.
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figures and tables together.
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applicable
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page says that a legend should not exceed the word limit of the article type,
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to each figure legend.
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keep each figure legend below **300 English words**. Because that number is not
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repeated on the current live pages, treat it as a **historical advisory ceiling**,
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not as a current journal hard limit.
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editor gives a newer instruction:
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300 words is not a per-panel allowance
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preflight ceiling
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needed to interpret the figure
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Data items.
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or CSV, and software packages as ZIP or TAR where appropriate.
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## 10. Accepted-in-principle production contract
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Apply these only after the editor requests final files:
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### Text and tables
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- Submit editable Microsoft Word or TeX/LaTeX source; PDF is not accepted as
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the final manuscript source.
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- Place tables at the end of the manuscript; complex tables may be supplied in
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Excel.
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- Number references sequentially and include DOI-bearing data and code records
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in the reference list where cited.
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- Do not use footnotes.
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- Use short bold Methods headings.
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- Keep acknowledgements brief, do not thank anonymous reviewers or editors,
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and provide the funding statement separately.
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- Link the corresponding authors' ORCID records before final acceptance when
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requested.
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- Cite figures in sequential order.
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- Supply figure panels at **at least 300 dpi** and no more than **180 mm** wide.
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- Use editable **5–7 pt sans-serif** labels and Symbol for Greek characters.
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- Use scale bars instead of magnification and define them in the legend.
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- Keep labels, scale bars and error bars editable rather than flattened into a
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raster when the production workflow permits.
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- Provide source data. Full unprocessed gels or blots are required for relevant
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figures, and statistical source data should be organized by figure, normally
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in an Excel workbook.
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### Extended Data and supporting-information inventory
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- Keep the combined Extended Data total at no more than **10**.
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- Fit each Extended Data figure or table on one PDF page.
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- Cite each item in the main text and include its legend in the Inventory of
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Supporting Information.
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- Finalize the SI numbering, citations, file formats and inventory before
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upload.
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## 11. Requirements not stated as fixed numbers
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The current official NMI pages reviewed for this contract do not publish:
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- a fixed title character or word limit
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- a separate numeric Methods word limit
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- a current separate numeric per-figure-legend word limit; the older official
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2018 guide's below-300-word instruction is retained only as an advisory
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preflight ceiling
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Do not borrow numbers from flagship *Nature*, *Nature Communications* or a
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third-party checklist. Do not present NMI's historical below-300-word figure-
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legend instruction as a current hard limit. Write concisely, then follow any
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new editor- or submission-system instruction at the active stage.
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Open-access article-processing charges and currencies can change. If the author
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asks for cost planning, check the live Publishing Options page instead of
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treating a stored price as a submission rule.
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## 12. Official sources
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Current pages verified **2026-08-14**:
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- Submission guidelines: <https://www.nature.com/natmachintell/submission-guidelines>
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- Content types: <https://www.nature.com/natmachintell/content>
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- Preparing your submission: <https://www.nature.com/natmachintell/submission-guidelines/preparing-your-submission>
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- Initial formatting: <https://www.nature.com/natmachintell/submission-guidelines/initial-formatting>
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- Writing and language: <https://www.nature.com/natmachintell/submission-guidelines/writing-and-language>
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- Accepted-in-principle and formatting: <https://www.nature.com/natmachintell/submission-guidelines/aip-and-formatting>
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- Double-anonymized peer review: <https://www.nature.com/natmachintell/submission-guidelines/dapr>
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- Editorial policies: <https://www.nature.com/natmachintell/editorial-policies>
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- Reporting standards, data and code: <https://www.nature.com/natmachintell/editorial-policies/reporting-standards>
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- Preprints and conference proceedings: <https://www.nature.com/natmachintell/editorial-policies/preprints-conference-proceedings>
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- Presubmission enquiries: <https://www.nature.com/natmachintell/submission-guidelines/presubmission-enquiries>
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- Aims and scope: <https://www.nature.com/natmachintell/aims>
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- Publishing options: <https://www.nature.com/natmachintell/submission-guidelines/publishing-options>
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Historical official source retained for conservative preflight only:
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- Brief guide for submission to Nature Machine Intelligence, revised 9 July
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2018: <https://www.nature.com/documents/natmachintell-brief-submission-guide.pdf>
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