psyclaw 0.28.1 → 0.28.2

package/vendor/academic-paper-skills/academic-paper-composer/scripts/final_evaluation.py

@@ -0,0 +1,550 @@
+#!/usr/bin/env python3
+"""
+Final Paper Evaluation Script
+
+This script evaluates the complete paper against quality standards before submission.
+Uses 7-dimension assessment (10 points each, 70 total).
+"""
+
+import json
+from datetime import datetime
+from typing import Dict, List
+
+def create_final_evaluation_template() -> Dict:
+    """Create template for final paper evaluation."""
+    return {
+        "paper_title": "",
+        "total_word_count": 0,
+        "target_platform": "",
+        "evaluation_date": "",
+        "evaluation": {
+            "overall_argument_quality": {
+                "score": 0,  # 1-10
+                "notes": ""
+            },
+            "literature_integration": {
+                "score": 0,  # 1-10
+                "citation_count": 0,
+                "notes": ""
+            },
+            "clarity_accessibility": {
+                "score": 0,  # 1-10
+                "notes": ""
+            },
+            "originality_contribution": {
+                "score": 0,  # 1-10
+                "notes": ""
+            },
+            "methodological_rigor": {
+                "score": 0,  # 1-10
+                "notes": ""
+            },
+            "structure_organization": {
+                "score": 0,  # 1-10
+                "notes": ""
+            },
+            "platform_conformity": {
+                "score": 0,  # 1-10
+                "notes": ""
+            }
+        },
+        "completeness_checklist": {
+            "structural": {
+                "abstract": False,
+                "introduction": False,
+                "main_chapters": False,
+                "conclusion": False,
+                "references": False
+            },
+            "content": {
+                "promises_fulfilled": False,
+                "claims_supported": False,
+                "terms_defined": False,
+                "objections_addressed": False,
+                "limitations_acknowledged": False
+            },
+            "citations": {
+                "text_has_bibliography": False,
+                "bibliography_cited": False,
+                "format_consistent": False,
+                "complete_information": False
+            },
+            "format": {
+                "title_page": False,
+                "section_numbering": False,
+                "heading_hierarchy": False,
+                "platform_requirements": False
+            }
+        },
+        "identified_issues": [],
+        "submission_ready": False
+    }
+
+def calculate_final_score(evaluation: Dict) -> Dict:
+    """Calculate total score and determine submission readiness."""
+    scores = evaluation.get("evaluation", {})
+
+    total = sum([
+        scores.get("overall_argument_quality", {}).get("score", 0),
+        scores.get("literature_integration", {}).get("score", 0),
+        scores.get("clarity_accessibility", {}).get("score", 0),
+        scores.get("originality_contribution", {}).get("score", 0),
+        scores.get("methodological_rigor", {}).get("score", 0),
+        scores.get("structure_organization", {}).get("score", 0),
+        scores.get("platform_conformity", {}).get("score", 0)
+    ])
+
+    percentage = (total / 70) * 100
+    passes = total >= 56  # 80% threshold
+
+    # Categorize quality
+    if total >= 63:  # 90%
+        quality_level = "Excellent"
+        recommendation = "Ready for immediate submission"
+    elif total >= 56:  # 80%
+        quality_level = "Good"
+        recommendation = "Ready for submission with minor optional improvements"
+    elif total >= 49:  # 70%
+        quality_level = "Acceptable"
+        recommendation = "Moderate revisions recommended before submission"
+    else:
+        quality_level = "Needs Improvement"
+        recommendation = "Major revisions required before submission"
+
+    return {
+        "total_score": total,
+        "max_score": 70,
+        "percentage": round(percentage, 1),
+        "passes_threshold": passes,
+        "quality_level": quality_level,
+        "recommendation": recommendation
+    }
+
+def evaluate_completeness(checklist: Dict) -> Dict:
+    """Evaluate completeness across all categories."""
+    categories = ["structural", "content", "citations", "format"]
+
+    results = {}
+    total_items = 0
+    completed_items = 0
+
+    for category in categories:
+        cat_data = checklist.get(category, {})
+        cat_total = len(cat_data)
+        cat_completed = sum(1 for v in cat_data.values() if v)
+
+        results[category] = {
+            "completed": cat_completed,
+            "total": cat_total,
+            "percentage": (cat_completed / cat_total * 100) if cat_total > 0 else 0,
+            "complete": cat_completed == cat_total
+        }
+
+        total_items += cat_total
+        completed_items += cat_completed
+
+    overall_complete = completed_items == total_items
+
+    return {
+        "by_category": results,
+        "overall": {
+            "completed": completed_items,
+            "total": total_items,
+            "percentage": (completed_items / total_items * 100) if total_items > 0 else 0,
+            "complete": overall_complete
+        }
+    }
+
+def identify_weak_dimensions(evaluation: Dict) -> List[Dict]:
+    """Identify dimensions scoring below 7."""
+    scores = evaluation.get("evaluation", {})
+    weak_dimensions = []
+
+    dimensions = [
+        ("overall_argument_quality", "Overall Argument Quality"),
+        ("literature_integration", "Literature Integration"),
+        ("clarity_accessibility", "Clarity & Accessibility"),
+        ("originality_contribution", "Originality & Contribution"),
+        ("methodological_rigor", "Methodological Rigor"),
+        ("structure_organization", "Structure & Organization"),
+        ("platform_conformity", "Platform & Style Conformity")
+    ]
+
+    for key, name in dimensions:
+        dim_data = scores.get(key, {})
+        score = dim_data.get("score", 0)
+
+        if score < 7:
+            severity = "high" if score <= 4 else "medium"
+            weak_dimensions.append({
+                "dimension": name,
+                "score": score,
+                "max_score": 10,
+                "notes": dim_data.get("notes", ""),
+                "severity": severity
+            })
+
+    return weak_dimensions
+
+def generate_recommendations(evaluation: Dict, weak_dims: List[Dict],
+                            completeness: Dict) -> List[Dict]:
+    """Generate prioritized revision recommendations."""
+    recommendations = []
+
+    # Completeness issues
+    if not completeness['overall']['complete']:
+        for category, data in completeness['by_category'].items():
+            if not data['complete']:
+                recommendations.append({
+                    "category": "completeness",
+                    "priority": "high",
+                    "issue": f"{category.title()} completeness: {data['completed']}/{data['total']} items",
+                    "action": f"Complete all {category} checklist items before submission"
+                })
+
+    # Weak dimensions
+    for dim in weak_dims:
+        recommendations.append({
+            "category": dim["dimension"],
+            "priority": dim["severity"],
+            "issue": f"{dim['dimension']} scored {dim['score']}/10",
+            "action": f"Address: {dim['notes']}" if dim['notes'] else f"Improve {dim['dimension'].lower()}"
+        })
+
+    # Citation count check
+    lit_data = evaluation.get("evaluation", {}).get("literature_integration", {})
+    citation_count = lit_data.get("citation_count", 0)
+
+    if citation_count < 20:
+        recommendations.append({
+            "category": "citations",
+            "priority": "high",
+            "issue": f"Only {citation_count} citations (minimum 20 recommended)",
+            "action": "Expand literature review and add supporting citations"
+        })
+    elif citation_count < 30:
+        recommendations.append({
+            "category": "citations",
+            "priority": "medium",
+            "issue": f"{citation_count} citations (30-40 recommended for philosophy)",
+            "action": "Consider adding more citations to strengthen arguments"
+        })
+
+    # Custom issues
+    for issue in evaluation.get("identified_issues", []):
+        recommendations.append({
+            "category": "custom",
+            "priority": "high",
+            "issue": issue,
+            "action": "Address this specific issue"
+        })
+
+    # Sort by priority
+    priority_order = {"high": 0, "medium": 1, "low": 2}
+    recommendations.sort(key=lambda x: priority_order.get(x["priority"], 3))
+
+    return recommendations
+
+def generate_final_report(evaluation: Dict) -> str:
+    """Generate comprehensive final evaluation report."""
+    score_result = calculate_final_score(evaluation)
+    completeness = evaluate_completeness(evaluation.get("completeness_checklist", {}))
+    weak_dims = identify_weak_dimensions(evaluation)
+    recommendations = generate_recommendations(evaluation, weak_dims, completeness)
+
+    report = f"""
+# Final Paper Evaluation Report
+
+Generated: {datetime.now().strftime('%Y-%m-%d %H:%M')}
+
+## Paper Information
+
+- **Title**: {evaluation.get('paper_title', 'N/A')}
+- **Total word count**: {evaluation.get('total_word_count', 'N/A')}
+- **Target platform**: {evaluation.get('target_platform', 'N/A')}
+- **Evaluation date**: {evaluation.get('evaluation_date', datetime.now().strftime('%Y-%m-%d'))}
+
+---
+
+## Overall Assessment
+
+- **Total Score**: {score_result['total_score']}/{score_result['max_score']} ({score_result['percentage']}%)
+- **Quality Level**: {score_result['quality_level']}
+- **Passes Threshold**: {'✓ YES' if score_result['passes_threshold'] else '✗ NO (56/70 required)'}
+- **Recommendation**: {score_result['recommendation']}
+
+---
+
+## 7-Dimension Evaluation
+
+"""
+
+    # Dimension scores
+    scores = evaluation.get("evaluation", {})
+    dimensions = [
+        ("overall_argument_quality", "Overall Argument Quality"),
+        ("literature_integration", "Literature Integration"),
+        ("clarity_accessibility", "Clarity & Accessibility"),
+        ("originality_contribution", "Originality & Contribution"),
+        ("methodological_rigor", "Methodological Rigor"),
+        ("structure_organization", "Structure & Organization"),
+        ("platform_conformity", "Platform & Style Conformity")
+    ]
+
+    for key, name in dimensions:
+        dim_data = scores.get(key, {})
+        score = dim_data.get("score", 0)
+        notes = dim_data.get("notes", "No notes provided")
+
+        icon = "✓" if score >= 7 else "⚠"
+        report += f"### {icon} {name}: {score}/10\n\n"
+        report += f"{notes}\n\n"
+
+        # Add citation count for literature dimension
+        if key == "literature_integration":
+            citation_count = dim_data.get("citation_count", 0)
+            report += f"**Citation count**: {citation_count}\n\n"
+
+    # Completeness assessment
+    report += "---\n\n## Completeness Assessment\n\n"
+
+    overall_comp = completeness['overall']
+    report += f"**Overall**: {overall_comp['completed']}/{overall_comp['total']} items complete ({overall_comp['percentage']:.1f}%)\n\n"
+
+    for category, data in completeness['by_category'].items():
+        icon = "✓" if data['complete'] else "⚠"
+        report += f"### {icon} {category.title()}: {data['completed']}/{data['total']} ({data['percentage']:.1f}%)\n\n"
+
+        # List incomplete items
+        cat_checklist = evaluation.get("completeness_checklist", {}).get(category, {})
+        incomplete = [item for item, done in cat_checklist.items() if not done]
+
+        if incomplete:
+            report += "**Incomplete items**:\n"
+            for item in incomplete:
+                report += f"- {item.replace('_', ' ').title()}\n"
+            report += "\n"
+
+    # Weak dimensions
+    if weak_dims:
+        report += "---\n\n## Weak Dimensions (Score <7)\n\n"
+        for dim in weak_dims:
+            report += f"### {dim['dimension']}: {dim['score']}/10 ({dim['severity'].upper()} priority)\n\n"
+            if dim['notes']:
+                report += f"{dim['notes']}\n\n"
+
+    # Recommendations
+    if recommendations:
+        report += "---\n\n## Revision Recommendations\n\n"
+        report += "Prioritized list of recommended revisions:\n\n"
+
+        for i, rec in enumerate(recommendations, 1):
+            priority_icon = {"high": "🔴", "medium": "🟡", "low": "🟢"}.get(rec['priority'], "⚪")
+            report += f"{i}. {priority_icon} **{rec['category'].title()}** ({rec['priority'].upper()} priority)\n"
+            report += f"   - Issue: {rec['issue']}\n"
+            report += f"   - Action: {rec['action']}\n\n"
+
+    # Submission decision
+    report += "---\n\n## Submission Decision\n\n"
+
+    submission_ready = evaluation.get('submission_ready', False)
+
+    if score_result['passes_threshold'] and completeness['overall']['complete']:
+        report += f"✓ **READY FOR SUBMISSION**: Paper meets quality threshold ({score_result['percentage']}%) and all completeness checks passed.\n\n"
+
+        if score_result['percentage'] >= 90:
+            report += "**Quality**: Excellent. No revisions required.\n\n"
+        else:
+            report += "**Optional improvements**:\n"
+            if recommendations:
+                for rec in recommendations[:3]:  # Top 3
+                    report += f"- {rec['action']}\n"
+            else:
+                report += "- No critical issues identified\n"
+            report += "\n**Note**: These improvements are optional. Paper is ready for submission as is.\n"
+
+    else:
+        report += f"✗ **NOT READY**: Paper requires revisions before submission.\n\n"
+
+        if not score_result['passes_threshold']:
+            report += f"**Quality issue**: Score {score_result['total_score']}/70 is below 56/70 threshold.\n"
+
+        if not completeness['overall']['complete']:
+            report += f"**Completeness issue**: {overall_comp['total'] - overall_comp['completed']} checklist items incomplete.\n"
+
+        report += "\n**Required actions**:\n"
+        report += "1. Address all HIGH priority recommendations\n"
+        report += "2. Complete all checklist items\n"
+        report += "3. Re-evaluate paper after revisions\n"
+        report += "4. Verify score ≥56/70 and all items complete\n"
+
+    # Platform-specific submission checklist
+    report += "\n---\n\n## Platform-Specific Submission Checklist\n\n"
+
+    platform = evaluation.get('target_platform', '').lower()
+
+    if 'philarchive' in platform or 'philpapers' in platform:
+        report += """**PhilArchive/PhilPapers**:
+- [ ] PDF format
+- [ ] Abstract <500 words
+- [ ] Proper metadata (title, keywords, AMS classification)
+- [ ] Author information complete
+- [ ] No formatting issues in PDF
+"""
+
+    elif 'arxiv' in platform:
+        report += """**arXiv**:
+- [ ] LaTeX or PDF format
+- [ ] Abstract <1920 characters
+- [ ] Proper category selection (cs.AI, q-bio.NC, etc.)
+- [ ] No embedded fonts issues
+- [ ] Author affiliations included
+"""
+
+    elif 'philsci' in platform:
+        report += """**PhilSci-Archive**:
+- [ ] PDF format
+- [ ] Proper subject classification
+- [ ] Keywords provided (3-5 recommended)
+- [ ] No copyrighted material without permission
+- [ ] Author contact information
+"""
+
+    else:
+        report += f"**{evaluation.get('target_platform', 'Platform')}**:\n"
+        report += "- [ ] Check platform-specific requirements\n"
+        report += "- [ ] Verify format compliance\n"
+        report += "- [ ] Prepare all required metadata\n"
+
+    report += "\n---\n\n## Next Steps\n\n"
+
+    if score_result['passes_threshold'] and completeness['overall']['complete']:
+        report += "1. Review optional improvements (if desired)\n"
+        report += "2. Complete platform-specific submission checklist\n"
+        report += "3. Generate final PDF\n"
+        report += "4. Submit to platform\n"
+        report += "5. Monitor for feedback/acceptance\n"
+    else:
+        report += "1. Implement HIGH priority revisions\n"
+        report += "2. Complete all checklist items\n"
+        report += "3. Re-run final evaluation\n"
+        report += "4. When passing, proceed with submission steps\n"
+
+    return report
+
+def validate_evaluation(evaluation: Dict) -> Dict:
+    """Validate that evaluation is complete and properly formatted."""
+    issues = []
+    warnings = []
+
+    # Check required fields
+    required_fields = ["paper_title", "total_word_count", "target_platform"]
+    for field in required_fields:
+        if not evaluation.get(field):
+            warnings.append(f"Missing recommended field: {field}")
+
+    # Check all dimensions scored
+    eval_data = evaluation.get("evaluation", {})
+    dimensions = ["overall_argument_quality", "literature_integration",
+                 "clarity_accessibility", "originality_contribution",
+                 "methodological_rigor", "structure_organization",
+                 "platform_conformity"]
+
+    for dim in dimensions:
+        if dim not in eval_data:
+            issues.append(f"Missing dimension: {dim}")
+        else:
+            score = eval_data[dim].get("score", 0)
+            if not isinstance(score, int) or score < 1 or score > 10:
+                issues.append(f"Invalid score for {dim}: {score} (must be 1-10)")
+
+            if not eval_data[dim].get("notes"):
+                warnings.append(f"No notes provided for {dim} (recommended)")
+
+    # Check completeness checklist
+    checklist = evaluation.get("completeness_checklist", {})
+    if not checklist:
+        issues.append("Missing completeness_checklist")
+
+    return {
+        "valid": len(issues) == 0,
+        "issues": issues,
+        "warnings": warnings
+    }
+
+def main():
+    """Interactive final evaluation interface."""
+    print("=" * 60)
+    print("Final Paper Evaluation Tool")
+    print("=" * 60)
+    print()
+
+    print("Options:")
+    print("1. Create evaluation template")
+    print("2. Evaluate paper from JSON")
+    print()
+
+    choice = input("Select option (1-2): ").strip()
+
+    if choice == "1":
+        # Create template
+        title = input("Paper title: ").strip()
+        word_count = int(input("Total word count: ").strip())
+        platform = input("Target platform: ").strip()
+
+        template = create_final_evaluation_template()
+        template["paper_title"] = title
+        template["total_word_count"] = word_count
+        template["target_platform"] = platform
+        template["evaluation_date"] = datetime.now().strftime('%Y-%m-%d')
+
+        filename = "final_evaluation.json"
+        with open(filename, 'w') as f:
+            json.dump(template, f, indent=2)
+
+        print(f"\nTemplate saved to {filename}")
+        print("Fill in the evaluation scores, notes, and checklist, then use option 2 to generate report.")
+
+    elif choice == "2":
+        # Evaluate paper
+        filename = input("Enter evaluation JSON filename: ").strip()
+        try:
+            with open(filename, 'r') as f:
+                evaluation = json.load(f)
+
+            # Validate
+            validation = validate_evaluation(evaluation)
+
+            if not validation['valid']:
+                print("\n⚠ Validation Issues:")
+                for issue in validation['issues']:
+                    print(f"  - {issue}")
+                print("\nPlease fix issues before generating report.")
+                return
+
+            if validation['warnings']:
+                print("\nℹ️ Warnings:")
+                for warning in validation['warnings']:
+                    print(f"  - {warning}")
+                print()
+
+            # Generate report
+            report = generate_final_report(evaluation)
+            print("\n" + report)
+
+            # Save report
+            report_filename = filename.replace('.json', '_report.md')
+            with open(report_filename, 'w') as f:
+                f.write(report)
+            print(f"\nReport saved to {report_filename}")
+
+        except FileNotFoundError:
+            print(f"Error: File '{filename}' not found")
+        except json.JSONDecodeError:
+            print(f"Error: '{filename}' is not valid JSON")
+
+    else:
+        print("Invalid option")
+
+if __name__ == "__main__":
+    main()