psyclaw 0.28.1 → 0.28.2

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Files changed (128) hide show
  1. package/README.md +5 -5
  2. package/agents/recommended/catalog.json +1 -1
  3. package/dist/src/adapters/pi/extension.js +43 -9
  4. package/dist/src/adapters/pi/extension.js.map +1 -1
  5. package/dist/src/ars/mode-editor.d.ts +20 -0
  6. package/dist/src/ars/mode-editor.js +57 -0
  7. package/dist/src/ars/mode-editor.js.map +1 -0
  8. package/dist/src/ars/profile.d.ts +4 -1
  9. package/dist/src/ars/profile.js +23 -6
  10. package/dist/src/ars/profile.js.map +1 -1
  11. package/package.json +10 -3
  12. package/vendor/academic-paper-skills/LICENSE +21 -0
  13. package/vendor/academic-paper-skills/NOTICE.md +7 -0
  14. package/vendor/academic-paper-skills/PSYCLAW_SOURCE.json +14 -0
  15. package/vendor/academic-paper-skills/academic-paper-composer/SKILL.md +840 -0
  16. package/vendor/academic-paper-skills/academic-paper-composer/references/section_guides.md +675 -0
  17. package/vendor/academic-paper-skills/academic-paper-composer/references/writing_standards.md +629 -0
  18. package/vendor/academic-paper-skills/academic-paper-composer/scripts/chapter_quality_check.py +470 -0
  19. package/vendor/academic-paper-skills/academic-paper-composer/scripts/final_evaluation.py +550 -0
  20. package/vendor/academic-paper-skills/academic-paper-strategist/SKILL.md +670 -0
  21. package/vendor/academic-paper-skills/academic-paper-strategist/references/quality_standards.md +336 -0
  22. package/vendor/academic-paper-skills/academic-paper-strategist/references/search_strategy.md +459 -0
  23. package/vendor/academic-paper-skills/academic-paper-strategist/scripts/evaluate_samples.py +300 -0
  24. package/vendor/academic-paper-skills/academic-paper-strategist/scripts/gap_analysis.py +399 -0
  25. package/vendor/ars/pi/wrapper.js +9 -0
  26. package/vendor/nature-skills/LICENSE +201 -0
  27. package/vendor/nature-skills/NOTICE.md +7 -0
  28. package/vendor/nature-skills/PSYCLAW_SOURCE.json +19 -0
  29. package/vendor/nature-skills/skills/nature-figure/README.md +107 -0
  30. package/vendor/nature-skills/skills/nature-figure/README_EN.md +107 -0
  31. package/vendor/nature-skills/skills/nature-figure/SKILL.md +154 -0
  32. package/vendor/nature-skills/skills/nature-figure/agents/openai.yaml +4 -0
  33. package/vendor/nature-skills/skills/nature-figure/evals/evals.json +325 -0
  34. package/vendor/nature-skills/skills/nature-figure/manifest.yaml +103 -0
  35. package/vendor/nature-skills/skills/nature-figure/references/ai-graphical-abstract-workflow.md +129 -0
  36. package/vendor/nature-skills/skills/nature-figure/references/api.md +576 -0
  37. package/vendor/nature-skills/skills/nature-figure/references/asset-adaptation.md +72 -0
  38. package/vendor/nature-skills/skills/nature-figure/references/backend-selection.md +118 -0
  39. package/vendor/nature-skills/skills/nature-figure/references/chart-types.md +348 -0
  40. package/vendor/nature-skills/skills/nature-figure/references/common-patterns.md +371 -0
  41. package/vendor/nature-skills/skills/nature-figure/references/demos.md +58 -0
  42. package/vendor/nature-skills/skills/nature-figure/references/design-theory.md +467 -0
  43. package/vendor/nature-skills/skills/nature-figure/references/figure-contract.md +122 -0
  44. package/vendor/nature-skills/skills/nature-figure/references/figure-legend-conventions.md +90 -0
  45. package/vendor/nature-skills/skills/nature-figure/references/multipanel-evidence-architecture.md +268 -0
  46. package/vendor/nature-skills/skills/nature-figure/references/nature-2026-observations.md +124 -0
  47. package/vendor/nature-skills/skills/nature-figure/references/nature-article-requirements.md +149 -0
  48. package/vendor/nature-skills/skills/nature-figure/references/openrouter-image-generation.md +141 -0
  49. package/vendor/nature-skills/skills/nature-figure/references/qa-contract.md +344 -0
  50. package/vendor/nature-skills/skills/nature-figure/references/r-template-index.md +66 -0
  51. package/vendor/nature-skills/skills/nature-figure/references/r-workflow.md +234 -0
  52. package/vendor/nature-skills/skills/nature-figure/references/template-catalog.md +33 -0
  53. package/vendor/nature-skills/skills/nature-figure/references/tutorials.md +260 -0
  54. package/vendor/nature-skills/skills/nature-figure/requirements.txt +1 -0
  55. package/vendor/nature-skills/skills/nature-figure/scripts/audit_figure_collisions.py +742 -0
  56. package/vendor/nature-skills/skills/nature-figure/scripts/audit_panel_alignment.py +933 -0
  57. package/vendor/nature-skills/skills/nature-figure/scripts/audit_pdf_text.py +152 -0
  58. package/vendor/nature-skills/skills/nature-figure/scripts/figure_safety.py +50 -0
  59. package/vendor/nature-skills/skills/nature-figure/scripts/generate_openrouter_schematic.py +260 -0
  60. package/vendor/nature-skills/skills/nature-figure/scripts/nature_figure_backend.py +93 -0
  61. package/vendor/nature-skills/skills/nature-figure/scripts/panel_alignment.R +188 -0
  62. package/vendor/nature-skills/skills/nature-figure/scripts/plot_templates.py +604 -0
  63. package/vendor/nature-skills/skills/nature-figure/scripts/validate_figure.py +835 -0
  64. package/vendor/nature-skills/skills/nature-figure/static/core/contract.md +55 -0
  65. package/vendor/nature-skills/skills/nature-figure/static/core/stance.md +41 -0
  66. package/vendor/nature-skills/skills/nature-figure/static/fragments/backend/python.md +56 -0
  67. package/vendor/nature-skills/skills/nature-figure/static/fragments/backend/r.md +63 -0
  68. package/vendor/nature-skills/skills/nature-figure/tests/test_figure_safety.py +209 -0
  69. package/vendor/nature-skills/skills/nature-polishing/README.md +58 -0
  70. package/vendor/nature-skills/skills/nature-polishing/README_EN.md +58 -0
  71. package/vendor/nature-skills/skills/nature-polishing/SKILL.md +111 -0
  72. package/vendor/nature-skills/skills/nature-polishing/agents/openai.yaml +4 -0
  73. package/vendor/nature-skills/skills/nature-polishing/manifest.yaml +101 -0
  74. package/vendor/nature-skills/skills/nature-polishing/references/latex-layout.md +211 -0
  75. package/vendor/nature-skills/skills/nature-polishing/references/nat-comms-2025-diction.md +73 -0
  76. package/vendor/nature-skills/skills/nature-polishing/references/phrasebank-playbook.md +175 -0
  77. package/vendor/nature-skills/skills/nature-polishing/references/published-article-patterns.md +126 -0
  78. package/vendor/nature-skills/skills/nature-polishing/references/section-moves.md +252 -0
  79. package/vendor/nature-skills/skills/nature-polishing/references/style-guardrails.md +94 -0
  80. package/vendor/nature-skills/skills/nature-polishing/references/writing-strategy.md +160 -0
  81. package/vendor/nature-skills/skills/nature-polishing/static/core/failure-modes.md +29 -0
  82. package/vendor/nature-skills/skills/nature-polishing/static/core/output-format.md +21 -0
  83. package/vendor/nature-skills/skills/nature-polishing/static/core/stance.md +26 -0
  84. package/vendor/nature-skills/skills/nature-polishing/static/fragments/journal/generic.md +17 -0
  85. package/vendor/nature-skills/skills/nature-polishing/static/fragments/journal/nat-comms.md +38 -0
  86. package/vendor/nature-skills/skills/nature-polishing/static/fragments/journal/nat-mach-intell.md +102 -0
  87. package/vendor/nature-skills/skills/nature-polishing/static/fragments/journal/nature.md +19 -0
  88. package/vendor/nature-skills/skills/nature-polishing/static/fragments/language/en.md +19 -0
  89. package/vendor/nature-skills/skills/nature-polishing/static/fragments/language/zh-to-en.md +19 -0
  90. package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/algorithmic.md +18 -0
  91. package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/hypothesis.md +17 -0
  92. package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/methods.md +35 -0
  93. package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/research.md +29 -0
  94. package/vendor/nature-skills/skills/nature-polishing/static/fragments/paper_type/review.md +17 -0
  95. package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/abstract.md +26 -0
  96. package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/conclusion.md +15 -0
  97. package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/discussion.md +48 -0
  98. package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/intro.md +33 -0
  99. package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/methods.md +26 -0
  100. package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/results.md +61 -0
  101. package/vendor/nature-skills/skills/nature-polishing/static/fragments/section/title.md +17 -0
  102. package/vendor/nature-skills/skills/nature-ref-verifier/README.md +44 -0
  103. package/vendor/nature-skills/skills/nature-ref-verifier/README_EN.md +44 -0
  104. package/vendor/nature-skills/skills/nature-ref-verifier/SKILL.md +196 -0
  105. package/vendor/nature-skills/skills/nature-ref-verifier/agents/openai.yaml +4 -0
  106. package/vendor/nature-skills/skills/nature-ref-verifier/manifest.yaml +19 -0
  107. package/vendor/nature-skills/skills/nature-ref-verifier/references/common-patterns.md +96 -0
  108. package/vendor/nature-skills/skills/nature-shared/README.md +43 -0
  109. package/vendor/nature-skills/skills/nature-shared/README_EN.md +43 -0
  110. package/vendor/nature-skills/skills/nature-shared/SKILL.md +33 -0
  111. package/vendor/nature-skills/skills/nature-shared/agents/openai.yaml +6 -0
  112. package/vendor/nature-skills/skills/nature-shared/core/consistency-sweep.md +122 -0
  113. package/vendor/nature-skills/skills/nature-shared/core/discussion-argument-language.md +192 -0
  114. package/vendor/nature-skills/skills/nature-shared/core/ethics.md +88 -0
  115. package/vendor/nature-skills/skills/nature-shared/core/main-text-discipline.md +179 -0
  116. package/vendor/nature-skills/skills/nature-shared/core/nature-abstract.md +171 -0
  117. package/vendor/nature-skills/skills/nature-shared/core/nature-introduction.md +164 -0
  118. package/vendor/nature-skills/skills/nature-shared/core/nature-results-discussion.md +215 -0
  119. package/vendor/nature-skills/skills/nature-shared/core/paper-type-taxonomy.md +41 -0
  120. package/vendor/nature-skills/skills/nature-shared/core/reader-workflow.md +21 -0
  121. package/vendor/nature-skills/skills/nature-shared/core/research-compliance.md +192 -0
  122. package/vendor/nature-skills/skills/nature-shared/core/terminology-ledger.md +58 -0
  123. package/vendor/nature-skills/skills/nature-shared/journal-formats/nat-comms.md +139 -0
  124. package/vendor/nature-skills/skills/nature-shared/journal-formats/nature-machine-intelligence.md +431 -0
  125. package/vendor/nature-skills/skills/nature-shared/journal-formats/nature.md +313 -0
  126. package/vendor/nature-skills/skills/nature-shared/manifest.yaml +52 -0
  127. package/vendor/nature-skills/skills/nature-shared/scripts/check_consistency.py +273 -0
  128. package/vendor/nature-skills/skills/nature-shared/tests/test_check_consistency.py +63 -0
@@ -0,0 +1,336 @@
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+ # Quality Standards for Academic Paper Strategy
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+
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+ This document defines the quality evaluation criteria used throughout the strategic planning phase.
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+
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+ ## Phase 1: Platform Analysis Quality Standards
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+
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+ ### 1.1 Sample Paper Selection Quality
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+
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+ **Time Distribution**:
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+ - ✓ Recent (last 6 months): 3 papers - captures current trends
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+ - ✓ Current (1-2 years): 3 papers - represents accepted standards
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+ - ✓ Classic (highly cited): 2 papers - establishes benchmarks
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+ - **Minimum**: 8 papers total
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+
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+ **Relevance Scoring** (0-10 scale):
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+ - 9-10: Directly addresses user's topic with same methodology
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+ - 7-8: Related topic or similar approach
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+ - 5-6: Adjacent field or partial overlap
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+ - <5: Insufficient relevance, exclude
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+ - **Target**: Average relevance ≥ 8.0
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+
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+ **Diversity Checks**:
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+ - ✓ At least 5 different authors
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+ - ✓ At least 3 different research perspectives/schools
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+ - ✓ Varied paper lengths (short/medium/long form)
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+ - ✓ Different subfields if applicable
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+
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+ **Quality Indicators**:
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+ - ✓ Has DOI or permanent identifier
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+ - ✓ Complete abstract available
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+ - ✓ Proper citation format
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+ - ✓ Published on target platform
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+
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+ **Sample Evaluation Report Template**:
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+ ```markdown
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+ | # | Title | Authors | Date | Relevance | Selection Reason |
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+ |---|-------|---------|------|-----------|------------------|
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+ | 1 | ... | ... | YYYY-MM | 9/10 | Direct methodological match |
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+ | 2 | ... | ... | YYYY-MM | 8/10 | Similar theoretical framework |
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+ ...
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+ ```
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+
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+ ### 1.2 Platform Matching Quality
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+
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+ **Platform Relevance Score** (0-10):
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+ - Subject area alignment
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+ - Methodology fit (philosophical/empirical/computational)
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+ - Format compatibility
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+ - Historical acceptance rate
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+
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+ **Minimum**: 7/10 for recommended platform
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+
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+ ---
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+
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+ ## Phase 2: Literature Review Quality Standards
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+
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+ ### 2.1 Literature Search Comprehensiveness
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+
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+ **Coverage Metrics**:
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+ - **Minimum**: 20 core papers
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+ - **Recommended**: 30-50 papers
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+ - **Time span**: Last 5 years + foundational classics
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+ - **Source diversity**: At least 3 major journals/venues
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+
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+ **Keyword Coverage**:
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+ - ✓ All core concepts covered (3-5 concepts)
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+ - ✓ Related terms and synonyms searched
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+ - ✓ Adjacent fields explored
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+ - **Evaluation**: Each concept should yield 5-10 relevant papers
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+
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+ **Search Quality Checklist**:
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+ ```markdown
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+ Round 1: Direct Search
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+ - ✓ 10-15 keyword combinations used
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+ - ✓ 30-50 papers collected
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+ - ✓ Top 20 papers retained after relevance filter
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+
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+ Round 2: Expanded Search
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+ - ✓ New keywords extracted from Round 1 papers
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+ - ✓ Adjacent fields searched
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+ - ✓ 10-20 additional papers collected
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+
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+ Round 3: Classic Literature
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+ - ✓ High-citation papers identified (>100 citations)
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+ - ✓ Foundational works included
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+ - ✓ 5-10 seminal papers added
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+ ```
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+
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+ ### 2.2 Research Gap Identification Quality
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+
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+ **Gap Definition Quality** (each gap must have):
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+ 1. **Specificity**: Clearly defined boundaries
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+ 2. **Evidence**: 3-5 citations showing gap exists
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+ 3. **Feasibility**: Reasonable for user to address
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+ 4. **Significance**: Addresses important question
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+
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+ **Gap Types** (identify 3-5 total):
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+ - **Complete gaps**: Entirely unresearched area
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+ - **Partial gaps**: Understudied or preliminary work only
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+ - **Controversy gaps**: Unresolved debates
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+
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+ **Quality Check**:
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+ ```markdown
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+ For each gap, verify:
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+ - ✓ No existing paper directly addresses this (evidence-based)
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+ - ✓ Related work acknowledges this as limitation
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+ - ✓ Gap aligns with user's research direction
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+ - ✓ Filling gap would constitute original contribution
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+ ```
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+
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+ ### 2.3 Originality Assessment Quality
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+
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+ **Similarity Analysis Requirements**:
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+ - **Minimum**: Compare with 15 related papers
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+ - **Recommended**: Compare with 20-30 papers
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+ - **Method**: Identify conceptual/methodological overlaps
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+
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+ **Similarity Categories**:
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+ - High (>80%): Requires repositioning or abandonment
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+ - Medium (50-80%): Emphasize differences, may proceed
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+ - Low (<50%): Good originality, proceed
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+
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+ **Innovation Identification**:
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+ Must identify at least 2 of:
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+ - Methodological innovation (new approach)
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+ - Theoretical innovation (new framework)
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+ - Application innovation (new problem domain)
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+ - Integrative innovation (novel synthesis)
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+
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+ **Impact Prediction Criteria** (1-10 scale):
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+ - Gap importance (5 points): Core vs peripheral problem
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+ - Generalizability (3 points): Applicable beyond narrow case
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+ - Explanatory power (2 points): Resolves existing puzzles
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+
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+ **Quality**: Must provide 300-word justification for impact score
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+
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+ ---
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+
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+ ## Phase 3: Outline Optimization Quality Standards
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+
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+ ### 3.1 Structure Quality
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+
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+ **Chapter Proportion Standards** (for philosophy papers):
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+ - Introduction: 15-20% of total
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+ - Main body: 60-70% of total
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+ - Conclusion: 10-15% of total
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+
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+ **Logical Flow Checklist**:
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+ - ✓ Each chapter builds on previous
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+ - ✓ Clear transitions between sections
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+ - ✓ No orphaned arguments
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+ - ✓ Conclusion addresses introduction promises
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+
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+ **Platform Conformity**:
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+ - Structural similarity to sample papers: ≥70%
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+ - Section naming consistent with platform norms
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+ - Word count aligned with platform standards
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+
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+ ### 3.2 Reviewer Evaluation Standards
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+
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+ **7-Dimension Assessment** (5 points each, 35 total):
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+
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+ 1. **Argument Clarity** (1-5)
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+ - 5: Crystal clear thesis + supporting arguments
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+ - 4: Clear thesis, minor ambiguities
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+ - 3: Thesis identifiable but needs sharpening
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+ - 2: Thesis unclear or scattered
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+ - 1: No clear thesis
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+
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+ 2. **Argument Completeness** (1-5)
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+ - 5: All steps justified, no logical gaps
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+ - 4: Minor gaps that can be filled
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+ - 3: Notable gaps requiring attention
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+ - 2: Major logical jumps
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+ - 1: Argument structure incomplete
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+
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+ 3. **Literature Support** (1-5)
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+ - 5: 50+ citations, all key works covered
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+ - 4: 40-50 citations, most key works
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+ - 3: 30-40 citations, some gaps
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+ - 2: 20-30 citations, major gaps
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+ - 1: <20 citations, insufficient
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+
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+ 4. **Methodological Clarity** (1-5)
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+ - 5: Method explicit, well-justified
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+ - 4: Method clear, minor justification issues
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+ - 3: Method stated but not defended
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+ - 2: Method unclear
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+ - 1: No methodological clarity
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+
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+ 5. **Originality Expression** (1-5)
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+ - 5: Contribution crystal clear + well-contrasted
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+ - 4: Contribution clear, minor positioning issues
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+ - 3: Contribution stated but not differentiated
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+ - 2: Contribution unclear
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+ - 1: No clear contribution
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+
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+ 6. **Organization** (1-5)
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+ - 5: Perfect flow, optimal proportions
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+ - 4: Good flow, minor proportion issues
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+ - 3: Acceptable flow, some reorganization needed
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+ - 2: Disjointed, needs restructuring
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+ - 1: Chaotic structure
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+
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+ 7. **Platform Fit** (1-5)
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+ - 5: Perfect match to platform style
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+ - 4: Good match, minor adjustments needed
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+ - 3: Acceptable, needs adaptation
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+ - 2: Poor fit, major revision required
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+ - 1: Wrong platform
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+
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+ **Passing Threshold**: ≥28/35 (80%)
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+
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+ **Quality Gate**: Must identify at least 3 issues with concrete improvement suggestions
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+
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+ ---
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+
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+ ## Quality Gates (Checkpoints)
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+
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+ ### Gate 1: Platform Analysis Complete
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+ **Requirements**:
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+ - ✓ Sample papers ≥8
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+ - ✓ Time distribution balanced (recent/current/classic)
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+ - ✓ Average relevance ≥8/10
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+ - ✓ Diversity checks passed
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+ - ✓ Writing guidelines extracted
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+
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+ **Action if Failed**: Re-search with adjusted criteria
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+
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+ ---
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+
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+ ### Gate 2: Literature Review Complete
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+ **Requirements**:
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+ - ✓ Core papers ≥20
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+ - ✓ Keywords coverage complete (all core concepts)
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+ - ✓ Research gaps ≥3, each with evidence
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+ - ✓ Originality score ≥7/10
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+ - ✓ Impact justification provided
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+
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+ **Action if Failed**: Continue search or pivot research direction
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+
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+ ---
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+
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+ ### Gate 3: Outline Optimized
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+ **Requirements**:
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+ - ✓ Reviewer score ≥28/35 (80%)
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+ - ✓ All high-severity issues resolved
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+ - ✓ Structure proportions balanced
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+ - ✓ Platform conformity ≥70%
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+
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+ **Action if Failed**: Redesign outline addressing identified issues
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+
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+ ---
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+
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+ ## Evaluation Report Templates
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+
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+ ### Sample Paper Evaluation Report
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+ ```markdown
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+ # Sample Paper Analysis Report
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+
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+ ## Executive Summary
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+ - Papers analyzed: [N]
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+ - Average relevance: [X/10]
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+ - Time distribution: [breakdown]
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+ - Quality: [Pass/Fail]
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+
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+ ## Detailed Breakdown
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+ [Table with all papers]
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+
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+ ## Writing Style Patterns
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+ [Extracted guidelines]
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+
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+ ## Recommendation
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+ [Proceed/Re-search/Adjust criteria]
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+ ```
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+
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+ ### Literature Gap Analysis Report
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+ ```markdown
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+ # Research Gap Identification Report
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+
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+ ## Literature Coverage
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+ - Papers reviewed: [N]
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+ - Timespan: [range]
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+ - Core concepts covered: [list]
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+
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+ ## Identified Gaps
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+ ### Gap 1: [Title]
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+ - Type: [Complete/Partial/Controversy]
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+ - Evidence: [3-5 citations]
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+ - Significance: [High/Medium/Low]
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+ - Feasibility: [Assessment]
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+
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+ [Repeat for each gap]
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+
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+ ## Originality Assessment
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+ - Similarity analysis: [High/Medium/Low]
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+ - Innovation types: [list]
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+ - Impact prediction: [X/10]
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+ - Justification: [300 words]
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+
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+ ## Recommendation
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+ [Proceed/Pivot/Reposition]
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+ ```
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+
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+ ### Reviewer Evaluation Report
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+ ```markdown
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+ # Outline Reviewer Assessment
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+
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+ ## 7-Dimension Scores
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+ 1. Argument Clarity: [X/5]
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+ 2. Argument Completeness: [X/5]
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+ 3. Literature Support: [X/5]
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+ 4. Methodological Clarity: [X/5]
314
+ 5. Originality Expression: [X/5]
315
+ 6. Organization: [X/5]
316
+ 7. Platform Fit: [X/5]
317
+
318
+ **Total: [X/35]** (Threshold: 28/35)
319
+
320
+ ## Identified Issues
321
+ [Prioritized list: High/Medium/Low severity]
322
+
323
+ ## Improvement Recommendations
324
+ [Concrete suggestions for each issue]
325
+
326
+ ## Predicted Improvement
327
+ [Expected score after implementing recommendations]
328
+ ```
329
+
330
+ ---
331
+
332
+ ## Notes
333
+
334
+ - These standards are calibrated for **philosophy and interdisciplinary papers** on **preprint platforms**
335
+ - Standards may need adjustment for pure empirical sciences or formal logic papers
336
+ - When in doubt, err on the side of higher quality standards—better to over-prepare than under-prepare