protvista-uniprot 2.8.2 → 2.8.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. package/dist/es/protvista-uniprot-structure.js +60 -55
  2. package/dist/es/protvista-uniprot-structure.js.map +1 -1
  3. package/dist/protvista-uniprot.js +19 -19
  4. package/dist/protvista-uniprot.js.LICENSE.txt +10 -10
  5. package/dist/protvista-uniprot.js.map +1 -1
  6. package/package.json +16 -16
  7. package/src/.DS_Store +0 -0
  8. package/src/protvista-uniprot-structure.ts +71 -65
package/package.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "name": "protvista-uniprot",
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  "description": "ProtVista tool for the UniProt website",
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- "version": "2.8.2",
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+ "version": "2.8.6",
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  "files": [
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  "dist",
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  "src"
@@ -29,23 +29,23 @@
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  "data-loader": "^2.9.1",
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  "file-saver": "^2.0.2",
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  "lit-element": "^2.2.0",
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- "protvista-datatable": "^3.4.2",
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- "protvista-feature-adapter": "^3.4.5",
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- "protvista-filter": "^3.1.2",
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- "protvista-interpro-adapter": "^3.4.0",
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- "protvista-interpro-track": "^3.4.0",
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- "protvista-manager": "^3.4.0",
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- "protvista-navigation": "^3.4.0",
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+ "protvista-datatable": "3.5.1",
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+ "protvista-feature-adapter": "3.5.1",
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+ "protvista-filter": "3.1.2",
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+ "protvista-interpro-adapter": "3.4.0",
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+ "protvista-interpro-track": "3.4.0",
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+ "protvista-manager": "3.4.0",
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+ "protvista-navigation": "3.5.1",
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  "protvista-proteomics-adapter": "^3.4.5",
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- "protvista-sequence": "^3.4.0",
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- "protvista-structure": "3.4.0",
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- "protvista-structure-adapter": "^3.4.5",
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- "protvista-tooltip": "^3.1.2",
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- "protvista-track": "^3.4.0",
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- "protvista-variation": "^3.4.4",
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+ "protvista-sequence": "3.5.1",
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+ "protvista-structure": "3.5.2",
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+ "protvista-structure-adapter": "3.5.1",
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+ "protvista-tooltip": "3.1.2",
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+ "protvista-track": "3.4.0",
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+ "protvista-variation": "3.5.2",
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  "protvista-variation-adapter": "^3.4.5",
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- "protvista-variation-graph": "^3.4.0",
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- "protvista-zoomable": "^3.4.0",
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+ "protvista-variation-graph": "3.4.0",
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+ "protvista-zoomable": "3.4.0",
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  "timing-functions": "^2.0.1",
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  "url-join": "^4.0.1"
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  },
package/src/.DS_Store ADDED
Binary file
package/src/protvista-uniprot-structure.ts CHANGED
@@ -15,7 +15,7 @@ import {
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  } from 'protvista-structure/dist/es/protvista-structure';
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  const PDBLinks = [
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- { name: 'PDB', link: 'https://www.ebi.ac.uk/pdbe-srv/view/entry/' },
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+ { name: 'PDBe', link: 'https://www.ebi.ac.uk/pdbe-srv/view/entry/' },
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  { name: 'RCSB-PDB', link: 'https://www.rcsb.org/structure/' },
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  { name: 'PDBj', link: 'https://pdbj.org/mine/summary/' },
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  { name: 'PDBsum', link: 'https://www.ebi.ac.uk/pdbsum/' },
@@ -174,7 +174,7 @@ class ProtvistaUniprotStructure extends LitElement {
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  const protvistaDatatableElt = this.querySelector(
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  'protvista-datatable'
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  ) as ProtvistaDatatable;
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- if (!protvistaDatatableElt.selectedid) {
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+ if (!protvistaDatatableElt.selectedid && this.data?.[0]) {
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  // Select the first element in the table
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  this.onTableRowClick({ id: this.data[0].id });
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  protvistaDatatableElt.selectedid = this.structureId;
@@ -275,69 +275,75 @@ class ProtvistaUniprotStructure extends LitElement {
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  : html``}
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  </div>
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  <div class="class="protvista-uniprot-structure__table">
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- <protvista-datatable noScrollToRow noDeselect filter-scroll>
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- <table>
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- <thead>
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- <tr>
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- <th data-filter="source">Source</th>
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- <th>Identifier</th>
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- <th data-filter="method">Method</th>
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- <th>Resolution</th>
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- <th>Chain</th>
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- <th>Positions</th>
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- <th>Links</th>
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- <th><!--Download--></th>
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- </tr>
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- </thead>
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- <tbody>
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- ${this.data?.map(
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- ({
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- source,
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- id,
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- method,
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- resolution,
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- chain,
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- positions,
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- downloadLink,
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- }) => html`<tr
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- data-id="${id}"
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- @click="${() => this.onTableRowClick({ id })}"
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- >
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- <td data-filter="source" data-filter-value="${source}">
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- <strong>${source}</strong>
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- </td>
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- <td>${id}</td>
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- <td data-filter="method" data-filter-value="${method}">
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- ${method}
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- </td>
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- <td>${resolution ? resolution.replace('A', 'Å') : ''}</td>
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- <td>${chain || ''}</td>
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- <td>${positions || ''}</td>
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- <td>
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- ${source === 'PDB'
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- ? html`
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- ${PDBLinks.map((pdbLink) => {
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- return html`
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- <a href="${pdbLink.link}${id}">${pdbLink.name}</a>
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- `;
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- }).reduce((prev, curr) => html` ${prev} · ${curr} `)}
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- `
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- : html`<a href="${alphaFoldLink}${this.accession}"
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- >AlphaFold</a
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- >`}
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- </td>
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- <td>
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- ${downloadLink
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- ? html`<a href="${downloadLink}" class="download-link"
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- >${svg`${unsafeHTML(downloadIcon)}`}</a
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- >`
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- : ''}
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- </td>
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- </tr>`
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- )}
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- </tbody>
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- </table>
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- </protvista-datatable>
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+ ${this.data && this.data.length
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+ ? html`<protvista-datatable noScrollToRow noDeselect filter-scroll>
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+ <table>
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+ <thead>
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+ <tr>
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+ <th data-filter="source">Source</th>
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+ <th>Identifier</th>
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+ <th data-filter="method">Method</th>
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+ <th>Resolution</th>
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+ <th>Chain</th>
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+ <th>Positions</th>
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+ <th>Links</th>
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+ <th><!--Download--></th>
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+ </tr>
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+ </thead>
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+ <tbody>
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+ ${this.data?.map(
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+ ({
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+ source,
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+ id,
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+ method,
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+ resolution,
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+ chain,
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+ positions,
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+ downloadLink,
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+ }) => html`<tr
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+ data-id="${id}"
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+ @click="${() => this.onTableRowClick({ id })}"
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+ >
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+ <td data-filter="source" data-filter-value="${source}">
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+ <strong>${source}</strong>
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+ </td>
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+ <td>${id}</td>
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+ <td data-filter="method" data-filter-value="${method}">
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+ ${method}
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+ </td>
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+ <td>${resolution ? resolution.replace('A', 'Å') : ''}</td>
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+ <td>${chain || ''}</td>
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+ <td>${positions || ''}</td>
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+ <td>
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+ ${source === 'PDB'
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+ ? html`
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+ ${PDBLinks.map((pdbLink) => {
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+ return html`
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+ <a href="${pdbLink.link}${id}"
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+ >${pdbLink.name}</a
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+ >
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+ `;
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+ }).reduce(
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+ (prev, curr) => html` ${prev} · ${curr} `
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+ )}
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+ `
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+ : html`<a href="${alphaFoldLink}${this.accession}"
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+ >AlphaFold</a
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+ >`}
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+ </td>
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+ <td>
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+ ${downloadLink
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+ ? html`<a href="${downloadLink}" class="download-link"
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+ >${svg`${unsafeHTML(downloadIcon)}`}</a
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+ >`
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+ : ''}
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+ </td>
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+ </tr>`
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+ )}
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+ </tbody>
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+ </table>
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+ </protvista-datatable>`
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+ : html``}
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  ${this.loading
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  ? html`<div class="protvista-loader">
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  ${svg`${unsafeHTML(loaderIcon)}`}