protvista-uniprot 2.8.2 → 2.8.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/es/protvista-uniprot-structure.js +60 -55
- package/dist/es/protvista-uniprot-structure.js.map +1 -1
- package/dist/protvista-uniprot.js +19 -19
- package/dist/protvista-uniprot.js.LICENSE.txt +10 -10
- package/dist/protvista-uniprot.js.map +1 -1
- package/package.json +16 -16
- package/src/.DS_Store +0 -0
- package/src/protvista-uniprot-structure.ts +71 -65
|
@@ -8,7 +8,7 @@ import loaderIcon from './icons/spinner.svg';
|
|
|
8
8
|
import downloadIcon from './icons/download.svg';
|
|
9
9
|
import loaderStyles from './styles/loader-styles';
|
|
10
10
|
const PDBLinks = [
|
|
11
|
-
{ name: '
|
|
11
|
+
{ name: 'PDBe', link: 'https://www.ebi.ac.uk/pdbe-srv/view/entry/' },
|
|
12
12
|
{ name: 'RCSB-PDB', link: 'https://www.rcsb.org/structure/' },
|
|
13
13
|
{ name: 'PDBj', link: 'https://pdbj.org/mine/summary/' },
|
|
14
14
|
{ name: 'PDBsum', link: 'https://www.ebi.ac.uk/pdbsum/' },
|
|
@@ -123,8 +123,9 @@ class ProtvistaUniprotStructure extends LitElement {
|
|
|
123
123
|
this.removeStyles();
|
|
124
124
|
}
|
|
125
125
|
updated() {
|
|
126
|
+
var _a;
|
|
126
127
|
const protvistaDatatableElt = this.querySelector('protvista-datatable');
|
|
127
|
-
if (!protvistaDatatableElt.selectedid) {
|
|
128
|
+
if (!protvistaDatatableElt.selectedid && ((_a = this.data) === null || _a === void 0 ? void 0 : _a[0])) {
|
|
128
129
|
// Select the first element in the table
|
|
129
130
|
this.onTableRowClick({ id: this.data[0].id });
|
|
130
131
|
protvistaDatatableElt.selectedid = this.structureId;
|
|
@@ -222,59 +223,63 @@ class ProtvistaUniprotStructure extends LitElement {
|
|
|
222
223
|
: html ``}
|
|
223
224
|
</div>
|
|
224
225
|
<div class="class="protvista-uniprot-structure__table">
|
|
225
|
-
|
|
226
|
-
|
|
227
|
-
|
|
228
|
-
|
|
229
|
-
|
|
230
|
-
|
|
231
|
-
|
|
232
|
-
|
|
233
|
-
|
|
234
|
-
|
|
235
|
-
|
|
236
|
-
|
|
237
|
-
|
|
238
|
-
|
|
239
|
-
|
|
240
|
-
|
|
241
|
-
|
|
242
|
-
|
|
243
|
-
|
|
244
|
-
|
|
245
|
-
|
|
246
|
-
|
|
247
|
-
|
|
248
|
-
|
|
249
|
-
|
|
250
|
-
|
|
251
|
-
|
|
252
|
-
|
|
253
|
-
|
|
254
|
-
|
|
255
|
-
|
|
256
|
-
|
|
257
|
-
|
|
258
|
-
|
|
259
|
-
|
|
260
|
-
|
|
261
|
-
|
|
262
|
-
|
|
263
|
-
|
|
264
|
-
|
|
265
|
-
|
|
266
|
-
|
|
267
|
-
|
|
268
|
-
|
|
269
|
-
|
|
270
|
-
|
|
271
|
-
|
|
272
|
-
|
|
273
|
-
|
|
274
|
-
|
|
275
|
-
|
|
276
|
-
|
|
277
|
-
|
|
226
|
+
${this.data && this.data.length
|
|
227
|
+
? html `<protvista-datatable noScrollToRow noDeselect filter-scroll>
|
|
228
|
+
<table>
|
|
229
|
+
<thead>
|
|
230
|
+
<tr>
|
|
231
|
+
<th data-filter="source">Source</th>
|
|
232
|
+
<th>Identifier</th>
|
|
233
|
+
<th data-filter="method">Method</th>
|
|
234
|
+
<th>Resolution</th>
|
|
235
|
+
<th>Chain</th>
|
|
236
|
+
<th>Positions</th>
|
|
237
|
+
<th>Links</th>
|
|
238
|
+
<th><!--Download--></th>
|
|
239
|
+
</tr>
|
|
240
|
+
</thead>
|
|
241
|
+
<tbody>
|
|
242
|
+
${(_a = this.data) === null || _a === void 0 ? void 0 : _a.map(({ source, id, method, resolution, chain, positions, downloadLink, }) => html `<tr
|
|
243
|
+
data-id="${id}"
|
|
244
|
+
@click="${() => this.onTableRowClick({ id })}"
|
|
245
|
+
>
|
|
246
|
+
<td data-filter="source" data-filter-value="${source}">
|
|
247
|
+
<strong>${source}</strong>
|
|
248
|
+
</td>
|
|
249
|
+
<td>${id}</td>
|
|
250
|
+
<td data-filter="method" data-filter-value="${method}">
|
|
251
|
+
${method}
|
|
252
|
+
</td>
|
|
253
|
+
<td>${resolution ? resolution.replace('A', 'Å') : ''}</td>
|
|
254
|
+
<td>${chain || ''}</td>
|
|
255
|
+
<td>${positions || ''}</td>
|
|
256
|
+
<td>
|
|
257
|
+
${source === 'PDB'
|
|
258
|
+
? html `
|
|
259
|
+
${PDBLinks.map((pdbLink) => {
|
|
260
|
+
return html `
|
|
261
|
+
<a href="${pdbLink.link}${id}"
|
|
262
|
+
>${pdbLink.name}</a
|
|
263
|
+
>
|
|
264
|
+
`;
|
|
265
|
+
}).reduce((prev, curr) => html ` ${prev} · ${curr} `)}
|
|
266
|
+
`
|
|
267
|
+
: html `<a href="${alphaFoldLink}${this.accession}"
|
|
268
|
+
>AlphaFold</a
|
|
269
|
+
>`}
|
|
270
|
+
</td>
|
|
271
|
+
<td>
|
|
272
|
+
${downloadLink
|
|
273
|
+
? html `<a href="${downloadLink}" class="download-link"
|
|
274
|
+
>${svg `${unsafeHTML(downloadIcon)}`}</a
|
|
275
|
+
>`
|
|
276
|
+
: ''}
|
|
277
|
+
</td>
|
|
278
|
+
</tr>`)}
|
|
279
|
+
</tbody>
|
|
280
|
+
</table>
|
|
281
|
+
</protvista-datatable>`
|
|
282
|
+
: html ``}
|
|
278
283
|
${this.loading
|
|
279
284
|
? html `<div class="protvista-loader">
|
|
280
285
|
${svg `${unsafeHTML(loaderIcon)}`}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"protvista-uniprot-structure.js","sourceRoot":"","sources":["../../src/protvista-uniprot-structure.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,EAAkB,GAAG,EAAE,MAAM,aAAa,CAAC;AACzE,OAAO,EAAE,UAAU,EAAE,MAAM,oCAAoC,CAAC;AAChE,OAAO,EAAE,IAAI,EAAE,MAAM,aAAa,CAAC;AACnC,OAAO,kBAAkB,MAAM,qBAAqB,CAAC;AACrD,OAAO,kBAAkB,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AAEjD,OAAO,UAAU,MAAM,qBAAqB,CAAC;AAC7C,OAAO,YAAY,MAAM,sBAAsB,CAAC;AAChD,OAAO,YAAY,MAAM,wBAAwB,CAAC;AAOlD,MAAM,QAAQ,GAAG;IACf,EAAE,IAAI,EAAE,
|
|
1
|
+
{"version":3,"file":"protvista-uniprot-structure.js","sourceRoot":"","sources":["../../src/protvista-uniprot-structure.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,EAAkB,GAAG,EAAE,MAAM,aAAa,CAAC;AACzE,OAAO,EAAE,UAAU,EAAE,MAAM,oCAAoC,CAAC;AAChE,OAAO,EAAE,IAAI,EAAE,MAAM,aAAa,CAAC;AACnC,OAAO,kBAAkB,MAAM,qBAAqB,CAAC;AACrD,OAAO,kBAAkB,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AAEjD,OAAO,UAAU,MAAM,qBAAqB,CAAC;AAC7C,OAAO,YAAY,MAAM,sBAAsB,CAAC;AAChD,OAAO,YAAY,MAAM,wBAAwB,CAAC;AAOlD,MAAM,QAAQ,GAAG;IACf,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,4CAA4C,EAAE;IACpE,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,iCAAiC,EAAE;IAC7D,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,gCAAgC,EAAE;IACxD,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,+BAA+B,EAAE;CAC1D,CAAC;AACF,MAAM,aAAa,GAAG,oCAAoC,CAAC;AAa3D,MAAM,cAAc,GAAG,CAAC,IAAmB,EAA4B,EAAE,CACvE,IAAI,CAAC,YAAY;KACd,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,KAAK,KAAK,CAAC;KACrC,IAAI,CAAC,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,aAAa,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;KACpD,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE;IAC1B,IAAI,CAAC,UAAU,EAAE;QACf,OAAO;KACR;IACD,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,GAAG,UAAU,CAAC;IAElD,IAAI,KAAK,CAAC;IACV,IAAI,SAAS,CAAC;IACd,IAAI,MAAM,EAAE;QACV,MAAM,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QACjC,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE;YACvB,CAAC,KAAK,EAAE,SAAS,CAAC,GAAG,MAAM,CAAC;SAC7B;KACF;IACD,MAAM,MAAM,GAA2B;QACrC,EAAE;QACF,MAAM,EAAE,KAAK;QACb,MAAM;QACN,UAAU,EAAE,CAAC,UAAU,IAAI,UAAU,KAAK,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,UAAU;QACtE,YAAY,EAAE,sDAAsD,EAAE,CAAC,WAAW,EAAE,MAAM;QAC1F,KAAK;QACL,SAAS;QACT,kBAAkB,EAAE,EAAE;KACvB,CAAC;IACF,OAAO,MAAM,CAAC;AAChB,CAAC,CAAC;KACD,MAAM,CACL,CACE,eAAmD,EACR,EAAE,CAC7C,eAAe,KAAK,SAAS,CAChC,CAAC;AAEN,MAAM,aAAa,GAAG,CAAC,IAAsB,EAA4B,EAAE,CACzE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;IACf,EAAE,EAAE,CAAC,CAAC,OAAO;IACb,MAAM,EAAE,WAAW;IACnB,MAAM,EAAE,WAAW;IACnB,SAAS,EAAE,GAAG,CAAC,CAAC,YAAY,IAAI,CAAC,CAAC,UAAU,EAAE;IAC9C,kBAAkB,EAAE,CAAC,CAAC,OAAO;IAC7B,YAAY,EAAE,CAAC,CAAC,MAAM;CACvB,CAAC,CAAC,CAAC;AAEN,MAAM,UAAU,GAAG,IAAI,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;CA2BtB,CAAC;AAEF,MAAM,OAAO,GAAG,kBAAkB,CAAC;AACnC,MAAM,yBAA0B,SAAQ,UAAU;IAOhD;QACE,KAAK,EAAE,CAAC;QACR,aAAa,CAAC,qBAAqB,EAAE,kBAAkB,CAAC,CAAC;QACzD,aAAa,CAAC,qBAAqB,EAAE,kBAAkB,CAAC,CAAC;QACzD,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC;QACpB,IAAI,CAAC,eAAe,GAAG,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACvD,IAAI,CAAC,SAAS,EAAE,CAAC;IACnB,CAAC;IAED,MAAM,KAAK,UAAU;QACnB,OAAO;YACL,SAAS,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;YAC3B,WAAW,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;YAC7B,IAAI,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE;YACtB,OAAO,EAAE,EAAE,IAAI,EAAE,OAAO,EAAE;SAC3B,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,iBAAiB;QACrB,KAAK,CAAC,iBAAiB,EAAE,CAAC;QAC1B,IAAI,CAAC,IAAI,CAAC,SAAS;YAAE,OAAO;QAC5B,4EAA4E;QAC5E,MAAM,MAAM,GAAG,+CAA+C,IAAI,CAAC,SAAS,EAAE,CAAC;QAC/E,MAAM,YAAY,GAAG,8CAA8C,IAAI,CAAC,SAAS,EAAE,CAAC;QAEpF,MAAM,OAAO,GAA2B,EAAE,CAAC;QAE3C,MAAM,OAAO,CAAC,GAAG,CACf,CAAC,MAAM,EAAE,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,GAAW,EAAE,EAAE,CACzC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CACZ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC;QACvC,8CAA8C;QAC9C,wBAAwB;QACxB,CAAC,KAAK,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAC/B,CACF,CACF,CAAC;QAEF,IAAI,CAAC,OAAO,GAAG,KAAK,CAAC;QACrB,iCAAiC;QACjC,wBAAwB;QACxB,MAAM,OAAO,GAAG,cAAc,CAAC,OAAO,CAAC,MAAM,CAAC,IAAI,EAAE,CAAC,CAAC;QACtD,MAAM,MAAM,GAAG,aAAa,CAAC,OAAO,CAAC,YAAY,CAAC,IAAI,EAAE,CAAC,CAAC;QAC1D,MAAM,IAAI,GAAG,CAAC,GAAG,OAAO,EAAE,GAAG,MAAM,CAAC,CAAC;QACrC,IAAI,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,MAAM;YAAE,OAAO;QAElC,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;IACnB,CAAC;IAED,oBAAoB;QAClB,IAAI,CAAC,YAAY,EAAE,CAAC;IACtB,CAAC;IAED,OAAO;;QACL,MAAM,qBAAqB,GAAG,IAAI,CAAC,aAAa,CAC9C,qBAAqB,CACA,CAAC;QACxB,IAAI,CAAC,qBAAqB,CAAC,UAAU,KAAI,MAAA,IAAI,CAAC,IAAI,0CAAG,CAAC,CAAC,CAAA,EAAE;YACvD,wCAAwC;YACxC,IAAI,CAAC,eAAe,CAAC,EAAE,EAAE,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YAC9C,qBAAqB,CAAC,UAAU,GAAG,IAAI,CAAC,WAAW,CAAC;SACrD;IACH,CAAC;IAED,SAAS;;QACP,uCAAuC;QACvC,oCAAoC;QACpC,kBAAkB;QAClB,IAAI,CAAC,QAAQ,CAAC,cAAc,CAAC,OAAO,CAAC,EAAE;YACrC,MAAM,QAAQ,GAAG,QAAQ,CAAC,aAAa,CAAC,OAAO,CAAC,CAAC;YACjD,QAAQ,CAAC,EAAE,GAAG,OAAO,CAAC;YACtB,QAAQ,CAAC,SAAS,GAAG;QACnB,YAAY,CAAC,QAAQ,EAAE;QACvB,IAAI,CAAC,QAAQ;OACd,CAAC;YACF,MAAA,QAAQ,CAAC,aAAa,CAAC,MAAM,CAAC,0CAAE,MAAM,CAAC,QAAQ,CAAC,CAAC;SAClD;IACH,CAAC;IAED,YAAY;QACV,MAAM,QAAQ,GAAG,QAAQ,CAAC,cAAc,CAAC,OAAO,CAAC,CAAC;QAClD,IAAI,QAAQ,EAAE;YACZ,QAAQ,CAAC,MAAM,EAAE,CAAC;SACnB;IACH,CAAC;IAED,eAAe,CAAC,EAAE,EAAE,EAAkB;QACpC,IAAI,CAAC,WAAW,GAAG,EAAE,CAAC;QACtB,IAAI,IAAI,CAAC,WAAW,CAAC,UAAU,CAAC,KAAK,CAAC,EAAE;YACtC,IAAI,CAAC,QAAQ,GAAG,UAAU,CAAC;SAC5B;aAAM;YACL,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAC;SAC3B;IACH,CAAC;IAED,IAAI,QAAQ;QACV,OAAO,GAAG,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KAmCT,CAAC;IACJ,CAAC;IAED;;SAEK;IACL,gBAAgB;QACd,OAAO,IAAI,CAAC;IACd,CAAC;IAED,MAAM;;QACJ,OAAO,IAAI,CAAA;;;YAGH,IAAI,CAAC,QAAQ;YACb,CAAC,CAAC,IAAI,CAAA;kBACA,IAAI,CAAC,QAAQ;qBACV;YACT,CAAC,CAAC,IAAI,CAAA,EAAE;YACR,IAAI,CAAC,WAAW;YAChB,CAAC,CAAC,IAAI,CAAA;8BACY,IAAI,CAAC,WAAW;4BAClB,IAAI,CAAC,SAAS;sCACJ;YAC1B,CAAC,CAAC,IAAI,CAAA,EAAE;;;UAGV,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,IAAI,CAAC,MAAM;YAC7B,CAAC,CAAC,IAAI,CAAA;;;;;;;;;;;;;;;oBAeI,MAAA,IAAI,CAAC,IAAI,0CAAE,GAAG,CACd,CAAC,EACC,MAAM,EACN,EAAE,EACF,MAAM,EACN,UAAU,EACV,KAAK,EACL,SAAS,EACT,YAAY,GACb,EAAE,EAAE,CAAC,IAAI,CAAA;iCACG,EAAE;gCACH,GAAG,EAAE,CAAC,IAAI,CAAC,eAAe,CAAC,EAAE,EAAE,EAAE,CAAC;;oEAEE,MAAM;kCACxC,MAAM;;4BAEZ,EAAE;oEACsC,MAAM;0BAChD,MAAM;;4BAEJ,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE;4BAC9C,KAAK,IAAI,EAAE;4BACX,SAAS,IAAI,EAAE;;0BAEjB,MAAM,KAAK,KAAK;gBAChB,CAAC,CAAC,IAAI,CAAA;gCACA,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE;oBACzB,OAAO,IAAI,CAAA;6CACE,OAAO,CAAC,IAAI,GAAG,EAAE;uCACvB,OAAO,CAAC,IAAI;;iCAElB,CAAC;gBACJ,CAAC,CAAC,CAAC,MAAM,CACP,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,CAAA,IAAI,IAAI,MAAM,IAAI,GAAG,CAC1C;6BACF;gBACH,CAAC,CAAC,IAAI,CAAA,YAAY,aAAa,GAAG,IAAI,CAAC,SAAS;;8BAE5C;;;0BAGJ,YAAY;gBACZ,CAAC,CAAC,IAAI,CAAA,YAAY,YAAY;iCACvB,GAAG,CAAA,GAAG,UAAU,CAAC,YAAY,CAAC,EAAE;8BACnC;gBACJ,CAAC,CAAC,EAAE;;0BAEJ,CACP;;;mCAGgB;YACzB,CAAC,CAAC,IAAI,CAAA,EAAE;UACR,IAAI,CAAC,OAAO;YACZ,CAAC,CAAC,IAAI,CAAA;gBACA,GAAG,CAAA,GAAG,UAAU,CAAC,UAAU,CAAC,EAAE;mBAC3B;YACT,CAAC,CAAC,IAAI,CAAA,EAAE;UACR,CAAC,IAAI,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,OAAO;YAC3B,CAAC,CAAC,IAAI,CAAA;uDACuC,IAAI,CAAC,SAAS;mBAClD;YACT,CAAC,CAAC,IAAI,CAAA,EAAE;;KAEb,CAAC;IACJ,CAAC;CACF;AAED,eAAe,yBAAyB,CAAC"}
|